Wall clock time and date at job start Wed Apr 1 2020 04:51:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86801 * 120.00113 * 2 1
4 4 H 1.48505 * 109.46820 * 240.00426 * 3 2 1
5 5 H 1.48500 * 109.47248 * 0.02562 * 3 2 1
6 6 H 1.48497 * 109.47343 * 120.00401 * 3 2 1
7 7 C 1.37874 * 119.99892 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99974 * 179.97438 * 7 2 1
9 9 C 1.50700 * 120.00203 * 359.97438 * 7 2 1
10 10 N 1.46501 * 109.47394 * 180.02562 * 9 7 2
11 11 C 1.34778 * 119.99787 * 180.02562 * 10 9 7
12 12 O 1.21279 * 120.00135 * 359.97438 * 11 10 9
13 13 C 1.50703 * 119.99714 * 179.97438 * 11 10 9
14 14 N 1.46892 * 109.47170 * 186.27618 * 13 11 10
15 15 C 1.46964 * 111.00414 * 66.36871 * 14 13 11
16 16 C 1.53049 * 109.36823 * 183.18967 * 15 14 13
17 17 N 1.46953 * 109.36212 * 301.59864 * 16 15 14
18 18 C 1.38464 * 111.00007 * 183.18897 * 17 16 15
19 19 C 1.39391 * 119.54031 * 180.02562 * 18 17 16
20 20 C 1.36857 * 119.38159 * 179.97438 * 19 18 17
21 21 C 1.40357 * 118.48705 * 359.97438 * 20 19 18
22 22 C 1.47548 * 120.47214 * 180.02562 * 21 20 19
23 23 N 1.34771 * 119.99791 * 180.02562 * 22 21 20
24 24 O 1.21591 * 119.99539 * 359.97438 * 22 21 20
25 25 C 1.39547 * 119.05179 * 0.02562 * 21 20 19
26 26 N 1.31679 * 120.52024 * 0.02562 * 25 21 20
27 27 C 1.46958 * 110.88104 * 59.32308 * 17 16 15
28 28 C 1.46954 * 111.00384 * 190.16945 * 14 13 11
29 29 H 0.96996 * 119.99520 * 359.97438 * 1 2 3
30 30 H 1.09001 * 109.47514 * 59.99809 * 9 7 2
31 31 H 1.09004 * 109.47147 * 300.00189 * 9 7 2
32 32 H 0.97001 * 120.00062 * 359.97438 * 10 9 7
33 33 H 1.08998 * 109.46912 * 66.27270 * 13 11 10
34 34 H 1.09004 * 109.47185 * 306.27404 * 13 11 10
35 35 H 1.09003 * 109.48678 * 63.21790 * 15 14 13
36 36 H 1.08999 * 109.48431 * 303.16148 * 15 14 13
37 37 H 1.08998 * 109.48539 * 181.63463 * 16 15 14
38 38 H 1.08993 * 109.50504 * 61.57659 * 16 15 14
39 39 H 1.08005 * 120.31314 * 359.97331 * 19 18 17
40 40 H 1.08001 * 120.75882 * 180.27314 * 20 19 18
41 41 H 0.96996 * 120.00093 * 359.97438 * 23 22 21
42 42 H 0.97002 * 119.99987 * 179.97438 * 23 22 21
43 43 H 1.08002 * 119.74031 * 179.97438 * 25 21 20
44 44 H 1.08997 * 109.49413 * 60.64744 * 27 17 16
45 45 H 1.09006 * 109.48720 * 180.71054 * 27 17 16
46 46 H 1.09002 * 109.48953 * 296.78283 * 28 14 13
47 47 H 1.09002 * 109.48927 * 56.84304 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6963 -1.2126
5 1 1.2843 2.7465 0.0006
6 1 3.1031 1.6964 1.2124
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 7 2.2030 -3.6127 -0.0005
11 6 1.7537 -4.8834 -0.0011
12 8 0.5613 -5.1049 -0.0011
13 6 2.7330 -6.0289 -0.0016
14 7 2.0048 -7.2955 -0.1535
15 6 1.3726 -7.3842 -1.4773
16 6 0.5605 -8.6784 -1.5662
17 7 1.4468 -9.8268 -1.3311
18 6 0.7604 -11.0208 -1.4743
19 6 1.4338 -12.2271 -1.2888
20 6 0.7521 -13.4053 -1.4306
21 6 -0.6114 -13.3544 -1.7597
22 6 -1.3887 -14.5979 -1.9227
23 7 -2.6973 -14.5379 -2.2393
24 8 -0.8483 -15.6767 -1.7722
25 6 -1.2213 -12.1110 -1.9306
26 7 -0.5283 -11.0007 -1.7858
27 6 2.0789 -9.7382 -0.0074
28 6 2.8910 -8.4440 0.0816
29 1 -0.4849 0.8400 0.0004
30 1 0.6240 -2.5568 -0.8903
31 1 0.6247 -2.5571 0.8897
32 1 3.1567 -3.4355 -0.0009
33 1 3.2834 -6.0367 0.9391
34 1 3.4312 -5.9096 -0.8302
35 1 2.1426 -7.3842 -2.2488
36 1 0.7119 -6.5295 -1.6226
37 1 0.1144 -8.7603 -2.5573
38 1 -0.2269 -8.6665 -0.8127
39 1 2.4837 -12.2320 -1.0356
40 1 1.2508 -14.3526 -1.2877
41 1 -3.1282 -13.6773 -2.3597
42 1 -3.2083 -15.3554 -2.3469
43 1 -2.2698 -12.0589 -2.1844
44 1 1.3090 -9.7382 0.7641
45 1 2.7397 -10.5929 0.1380
46 1 3.6783 -8.4561 -0.6721
47 1 3.3372 -8.3621 1.0727
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000917103600.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:51:25
Heat of formation + Delta-G solvation = -10.594316 kcal
Electronic energy + Delta-G solvation = -29290.636366 eV
Core-core repulsion = 25087.789839 eV
Total energy + Delta-G solvation = -4202.846527 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.35519 -39.94645 -39.15569 -38.10972 -35.55724 -34.26284 -34.11268 -33.06628
-32.34907 -31.16805 -30.99199 -28.86962 -27.11853 -25.17798 -24.76394 -23.62936
-22.90685 -22.28266 -21.21932 -20.08108 -19.66442 -18.72806 -17.80547 -17.55304
-17.13599 -16.33599 -15.99436 -15.69485 -15.47591 -15.36887 -15.30505 -15.04401
-14.77711 -14.73871 -14.43279 -14.13482 -14.03995 -13.78227 -13.56119 -13.26296
-13.01876 -12.70301 -12.40273 -12.12872 -11.92438 -11.62311 -11.42076 -11.15359
-11.11501 -10.99762 -10.84397 -10.73218 -10.40451 -10.32709 -10.26505 -10.18339
-9.82839 -9.42596 -9.05648 -8.74129 -8.52067 -8.31027 -7.87518 -6.17896
-4.25059 0.23731 0.87134 2.40747 3.02623 3.10127 3.23944 3.28874
3.30188 3.36242 3.48247 3.56491 3.89874 4.21400 4.36437 4.38999
4.40299 4.51677 4.61183 4.69137 4.84540 4.96132 5.07771 5.16919
5.18071 5.27234 5.28285 5.41416 5.42049 5.47677 5.51779 5.57605
5.65110 5.68048 5.88363 6.00022 6.06217 6.29408 6.33528 6.69893
6.82724 6.88931 6.98871 7.30628 7.43234 7.49460 7.50781 7.65821
7.78228 7.95960 8.61956 8.77483 9.10707 9.41772 10.92177
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.029879 B = 0.001626 C = 0.001559
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 936.895887 B =17215.106032 C =17955.925426
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.064 3.936
3 Si 0.904 3.096
4 H -0.275 1.275
5 H -0.285 1.285
6 H -0.275 1.275
7 C -0.545 4.545
8 H 0.062 0.938
9 C 0.252 3.748
10 N -0.715 5.715
11 C 0.497 3.503
12 O -0.538 6.538
13 C 0.037 3.963
14 N -0.521 5.521
15 C 0.051 3.949
16 C 0.073 3.927
17 N -0.479 5.479
18 C 0.348 3.652
19 C -0.197 4.197
20 C 0.007 3.993
21 C -0.234 4.234
22 C 0.575 3.425
23 N -0.852 5.852
24 O -0.545 6.545
25 C 0.170 3.830
26 N -0.521 5.521
27 C 0.064 3.936
28 C 0.056 3.944
29 H 0.266 0.734
30 H 0.026 0.974
31 H 0.026 0.974
32 H 0.389 0.611
33 H 0.101 0.899
34 H 0.059 0.941
35 H 0.037 0.963
36 H 0.105 0.895
37 H 0.090 0.910
38 H 0.067 0.933
39 H 0.144 0.856
40 H 0.147 0.853
41 H 0.401 0.599
42 H 0.406 0.594
43 H 0.159 0.841
44 H 0.061 0.939
45 H 0.089 0.911
46 H 0.046 0.954
47 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.393 -26.876 -3.356 27.190
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.522 5.522
2 C -0.140 4.140
3 Si 0.731 3.269
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.201 1.201
7 C -0.583 4.583
8 H 0.080 0.920
9 C 0.131 3.869
10 N -0.364 5.364
11 C 0.281 3.719
12 O -0.415 6.415
13 C -0.095 4.095
14 N -0.246 5.246
15 C -0.077 4.077
16 C -0.054 4.054
17 N -0.195 5.195
18 C 0.115 3.885
19 C -0.219 4.219
20 C -0.019 4.019
21 C -0.241 4.241
22 C 0.361 3.639
23 N -0.416 5.416
24 O -0.423 6.423
25 C 0.010 3.990
26 N -0.235 5.235
27 C -0.061 4.061
28 C -0.073 4.073
29 H 0.076 0.924
30 H 0.044 0.956
31 H 0.044 0.956
32 H 0.222 0.778
33 H 0.119 0.881
34 H 0.077 0.923
35 H 0.055 0.945
36 H 0.123 0.877
37 H 0.109 0.891
38 H 0.085 0.915
39 H 0.162 0.838
40 H 0.165 0.835
41 H 0.231 0.769
42 H 0.237 0.763
43 H 0.176 0.824
44 H 0.079 0.921
45 H 0.108 0.892
46 H 0.064 0.936
47 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 1.502 -26.568 -3.306 26.815
hybrid contribution 0.966 0.426 -0.210 1.076
sum 2.467 -26.143 -3.516 26.493
Atomic orbital electron populations
1.69965 1.06100 1.27416 1.48754 1.24950 0.94914 0.99433 0.94687
0.86475 0.79415 0.82337 0.78669 1.20090 1.21067 1.20077 1.21194
0.93220 0.90511 1.53392 0.91978 1.19077 0.88257 0.81871 0.97691
1.46466 1.11074 1.06112 1.72760 1.20278 0.89572 0.84051 0.77989
1.90650 1.16572 1.84566 1.49748 1.22006 0.95274 0.89320 1.02859
1.61794 1.31389 1.00585 1.30821 1.22407 0.98397 0.98576 0.88354
1.22118 0.93551 0.86457 1.03258 1.59062 1.30382 1.01207 1.28866
1.20112 0.87613 0.90850 0.89915 1.21315 1.01969 0.91160 1.07501
1.21262 0.92194 0.99047 0.89379 1.20702 0.96338 0.94272 1.12819
1.17965 0.81931 0.88517 0.75517 1.43742 1.10840 1.12771 1.74200
1.90827 1.70230 1.30109 1.51086 1.22756 0.99232 0.86359 0.90651
1.67758 1.06512 1.31305 1.17916 1.22371 0.98455 0.98716 0.86597
1.22203 0.93967 0.89195 1.01922 0.92387 0.95608 0.95555 0.77842
0.88137 0.92349 0.94470 0.87660 0.89132 0.91493 0.83834 0.83498
0.76920 0.76284 0.82440 0.92054 0.89226 0.93623 0.89329
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16
2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16
3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16
4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16
6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
7 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16
8 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16
9 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16
10 N -0.71 -14.47 5.55 -61.47 -0.34 -14.81 16
11 C 0.50 9.45 7.39 -10.98 -0.08 9.36 16
12 O -0.54 -12.43 14.68 5.56 0.08 -12.35 16
13 C 0.04 0.49 5.45 -4.98 -0.03 0.46 16
14 N -0.52 -6.85 4.40 -235.91 -1.04 -7.89 16
15 C 0.05 0.68 5.27 -3.76 -0.02 0.66 16
16 C 0.07 0.89 4.77 -3.77 -0.02 0.88 16
17 N -0.48 -5.04 4.72 -173.08 -0.82 -5.86 16
18 C 0.35 3.55 6.40 -155.28 -0.99 2.56 16
19 C -0.20 -1.62 9.14 -39.65 -0.36 -1.99 16
20 C 0.01 0.06 9.65 -39.29 -0.38 -0.32 16
21 C -0.23 -1.96 5.89 -104.82 -0.62 -2.58 16
22 C 0.57 4.97 8.04 -12.47 -0.10 4.87 16
23 N -0.85 -3.86 8.83 30.46 0.27 -3.59 16
24 O -0.54 -6.78 17.24 5.29 0.09 -6.69 16
25 C 0.17 1.35 10.71 -17.13 -0.18 1.17 16
26 N -0.52 -5.47 8.66 -12.14 -0.11 -5.57 16
27 C 0.06 0.57 5.36 -3.77 -0.02 0.55 16
28 C 0.06 0.53 5.61 -3.77 -0.02 0.50 16
29 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16
30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16
31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
32 H 0.39 6.67 8.32 -40.82 -0.34 6.34 16
33 H 0.10 1.12 8.02 -51.93 -0.42 0.71 16
34 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16
35 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16
36 H 0.11 1.75 6.09 -51.93 -0.32 1.43 16
37 H 0.09 1.11 7.81 -51.93 -0.41 0.70 16
38 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16
39 H 0.14 0.89 7.15 -52.48 -0.38 0.51 16
40 H 0.15 1.10 7.73 -52.49 -0.41 0.70 16
41 H 0.40 0.78 6.88 -40.82 -0.28 0.50 16
42 H 0.41 1.36 8.93 -40.82 -0.36 1.00 16
43 H 0.16 0.70 6.41 -52.49 -0.34 0.36 16
44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
45 H 0.09 0.57 6.76 -51.93 -0.35 0.22 16
46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
47 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16
LS Contribution 387.00 15.07 5.83 5.83
Total: -1.00 -35.96 387.00 -10.08 -46.04
By element:
Atomic # 1 Polarization: 11.48 SS G_CDS: -6.50 Total: 4.98 kcal
Atomic # 6 Polarization: 12.70 SS G_CDS: -3.27 Total: 9.43 kcal
Atomic # 7 Polarization: -61.53 SS G_CDS: -1.30 Total: -62.83 kcal
Atomic # 8 Polarization: -19.20 SS G_CDS: 0.17 Total: -19.03 kcal
Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -35.96 -10.08 -46.04 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000917103600.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.445 kcal
(2) G-P(sol) polarization free energy of solvation -35.962 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.517 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.039 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.594 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds