Wall clock time and date at job start Wed Apr 1 2020 04:51:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86801 * 120.00113 * 2 1
4 4 H 1.48505 * 109.46820 * 240.00426 * 3 2 1
5 5 H 1.48500 * 109.47248 * 0.02562 * 3 2 1
6 6 H 1.48497 * 109.47343 * 120.00401 * 3 2 1
7 7 C 1.37874 * 119.99892 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99974 * 179.97438 * 7 2 1
9 9 C 1.50700 * 120.00203 * 359.97438 * 7 2 1
10 10 N 1.46501 * 109.47394 * 180.02562 * 9 7 2
11 11 C 1.34778 * 119.99787 * 180.02562 * 10 9 7
12 12 O 1.21279 * 120.00135 * 359.97438 * 11 10 9
13 13 C 1.50703 * 119.99714 * 179.97438 * 11 10 9
14 14 N 1.46892 * 109.47170 * 186.27618 * 13 11 10
15 15 C 1.46964 * 111.00414 * 66.36871 * 14 13 11
16 16 C 1.53049 * 109.36823 * 183.18967 * 15 14 13
17 17 N 1.46953 * 109.36212 * 301.59864 * 16 15 14
18 18 C 1.38464 * 111.00007 * 183.18897 * 17 16 15
19 19 C 1.39391 * 119.54031 * 180.02562 * 18 17 16
20 20 C 1.36857 * 119.38159 * 179.97438 * 19 18 17
21 21 C 1.40357 * 118.48705 * 359.97438 * 20 19 18
22 22 C 1.47548 * 120.47214 * 180.02562 * 21 20 19
23 23 N 1.34771 * 119.99791 * 180.02562 * 22 21 20
24 24 O 1.21591 * 119.99539 * 359.97438 * 22 21 20
25 25 C 1.39547 * 119.05179 * 0.02562 * 21 20 19
26 26 N 1.31679 * 120.52024 * 0.02562 * 25 21 20
27 27 C 1.46958 * 110.88104 * 59.32308 * 17 16 15
28 28 C 1.46954 * 111.00384 * 190.16945 * 14 13 11
29 29 H 0.96996 * 119.99520 * 359.97438 * 1 2 3
30 30 H 1.09001 * 109.47514 * 59.99809 * 9 7 2
31 31 H 1.09004 * 109.47147 * 300.00189 * 9 7 2
32 32 H 0.97001 * 120.00062 * 359.97438 * 10 9 7
33 33 H 1.08998 * 109.46912 * 66.27270 * 13 11 10
34 34 H 1.09004 * 109.47185 * 306.27404 * 13 11 10
35 35 H 1.09003 * 109.48678 * 63.21790 * 15 14 13
36 36 H 1.08999 * 109.48431 * 303.16148 * 15 14 13
37 37 H 1.08998 * 109.48539 * 181.63463 * 16 15 14
38 38 H 1.08993 * 109.50504 * 61.57659 * 16 15 14
39 39 H 1.08005 * 120.31314 * 359.97331 * 19 18 17
40 40 H 1.08001 * 120.75882 * 180.27314 * 20 19 18
41 41 H 0.96996 * 120.00093 * 359.97438 * 23 22 21
42 42 H 0.97002 * 119.99987 * 179.97438 * 23 22 21
43 43 H 1.08002 * 119.74031 * 179.97438 * 25 21 20
44 44 H 1.08997 * 109.49413 * 60.64744 * 27 17 16
45 45 H 1.09006 * 109.48720 * 180.71054 * 27 17 16
46 46 H 1.09002 * 109.48953 * 296.78283 * 28 14 13
47 47 H 1.09002 * 109.48927 * 56.84304 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6963 -1.2126
5 1 1.2843 2.7465 0.0006
6 1 3.1031 1.6964 1.2124
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 7 2.2030 -3.6127 -0.0005
11 6 1.7537 -4.8834 -0.0011
12 8 0.5613 -5.1049 -0.0011
13 6 2.7330 -6.0289 -0.0016
14 7 2.0048 -7.2955 -0.1535
15 6 1.3726 -7.3842 -1.4773
16 6 0.5605 -8.6784 -1.5662
17 7 1.4468 -9.8268 -1.3311
18 6 0.7604 -11.0208 -1.4743
19 6 1.4338 -12.2271 -1.2888
20 6 0.7521 -13.4053 -1.4306
21 6 -0.6114 -13.3544 -1.7597
22 6 -1.3887 -14.5979 -1.9227
23 7 -2.6973 -14.5379 -2.2393
24 8 -0.8483 -15.6767 -1.7722
25 6 -1.2213 -12.1110 -1.9306
26 7 -0.5283 -11.0007 -1.7858
27 6 2.0789 -9.7382 -0.0074
28 6 2.8910 -8.4440 0.0816
29 1 -0.4849 0.8400 0.0004
30 1 0.6240 -2.5568 -0.8903
31 1 0.6247 -2.5571 0.8897
32 1 3.1567 -3.4355 -0.0009
33 1 3.2834 -6.0367 0.9391
34 1 3.4312 -5.9096 -0.8302
35 1 2.1426 -7.3842 -2.2488
36 1 0.7119 -6.5295 -1.6226
37 1 0.1144 -8.7603 -2.5573
38 1 -0.2269 -8.6665 -0.8127
39 1 2.4837 -12.2320 -1.0356
40 1 1.2508 -14.3526 -1.2877
41 1 -3.1282 -13.6773 -2.3597
42 1 -3.2083 -15.3554 -2.3469
43 1 -2.2698 -12.0589 -2.1844
44 1 1.3090 -9.7382 0.7641
45 1 2.7397 -10.5929 0.1380
46 1 3.6783 -8.4561 -0.6721
47 1 3.3372 -8.3621 1.0727
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000917103600.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:51:24
Heat of formation + Delta-G solvation = -41.824180 kcal
Electronic energy + Delta-G solvation = -29291.990595 eV
Core-core repulsion = 25087.789839 eV
Total energy + Delta-G solvation = -4204.200756 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.174 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-42.07096 -40.90815 -40.27557 -39.15748 -36.56719 -35.95840 -34.85314 -34.31888
-33.75451 -32.05679 -31.77766 -30.15884 -28.68748 -26.30348 -25.55796 -24.63943
-24.01838 -23.60009 -21.90300 -21.33206 -20.92124 -19.32895 -18.92403 -18.50472
-18.22331 -17.48151 -17.18481 -16.99232 -16.56060 -16.48431 -16.21056 -16.04996
-15.80049 -15.68683 -15.59238 -15.25172 -15.15637 -14.82279 -14.37957 -14.24473
-14.12909 -13.97580 -13.78014 -13.68547 -13.13345 -12.91688 -12.79693 -12.64455
-12.31986 -12.23142 -12.15706 -12.02658 -11.49423 -11.47394 -11.13432 -10.97599
-10.77388 -10.74019 -10.63596 -10.52122 -9.77504 -9.32813 -9.22422 -8.27721
-6.44427 -0.43879 0.23654 1.43990 1.47946 1.56112 1.72972 1.84205
2.27697 2.35826 2.47502 2.51711 2.81080 3.02977 3.07075 3.25244
3.71653 3.77204 3.82252 3.90480 3.97192 4.06450 4.13849 4.17895
4.25813 4.34474 4.40597 4.51954 4.54154 4.60644 4.77236 4.78827
4.87866 4.89780 5.01603 5.06475 5.13722 5.26844 5.30823 5.49653
5.51551 5.71570 5.83907 5.85047 5.88069 6.00881 6.09450 6.35408
6.67093 6.81941 6.99179 7.24163 7.25480 7.57714 8.84118
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.029879 B = 0.001626 C = 0.001559
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 936.895887 B =17215.106032 C =17955.925426
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.003 3.997
3 Si 0.985 3.015
4 H -0.262 1.262
5 H -0.287 1.287
6 H -0.262 1.262
7 C -0.557 4.557
8 H 0.085 0.915
9 C 0.269 3.731
10 N -0.710 5.710
11 C 0.492 3.508
12 O -0.585 6.585
13 C 0.052 3.948
14 N -0.544 5.544
15 C 0.058 3.942
16 C 0.087 3.913
17 N -0.477 5.477
18 C 0.328 3.672
19 C -0.188 4.188
20 C 0.001 3.999
21 C -0.237 4.237
22 C 0.574 3.426
23 N -0.830 5.830
24 O -0.588 6.588
25 C 0.169 3.831
26 N -0.548 5.548
27 C 0.063 3.937
28 C 0.058 3.942
29 H 0.268 0.732
30 H -0.015 1.015
31 H -0.015 1.015
32 H 0.408 0.592
33 H 0.134 0.866
34 H 0.087 0.913
35 H 0.047 0.953
36 H 0.064 0.936
37 H 0.084 0.916
38 H 0.041 0.959
39 H 0.168 0.832
40 H 0.155 0.845
41 H 0.416 0.584
42 H 0.414 0.586
43 H 0.188 0.812
44 H 0.044 0.956
45 H 0.123 0.877
46 H 0.061 0.939
47 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.186 -27.734 -3.250 28.401
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.196 4.196
3 Si 0.808 3.192
4 H -0.187 1.187
5 H -0.212 1.212
6 H -0.186 1.186
7 C -0.595 4.595
8 H 0.103 0.897
9 C 0.146 3.854
10 N -0.361 5.361
11 C 0.279 3.721
12 O -0.466 6.466
13 C -0.078 4.078
14 N -0.269 5.269
15 C -0.070 4.070
16 C -0.041 4.041
17 N -0.193 5.193
18 C 0.096 3.904
19 C -0.210 4.210
20 C -0.025 4.025
21 C -0.243 4.243
22 C 0.360 3.640
23 N -0.395 5.395
24 O -0.469 6.469
25 C 0.009 3.991
26 N -0.263 5.263
27 C -0.062 4.062
28 C -0.069 4.069
29 H 0.077 0.923
30 H 0.003 0.997
31 H 0.003 0.997
32 H 0.244 0.756
33 H 0.151 0.849
34 H 0.105 0.895
35 H 0.066 0.934
36 H 0.083 0.917
37 H 0.102 0.898
38 H 0.059 0.941
39 H 0.185 0.815
40 H 0.172 0.828
41 H 0.248 0.752
42 H 0.247 0.753
43 H 0.205 0.795
44 H 0.063 0.937
45 H 0.141 0.859
46 H 0.079 0.921
47 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 4.308 -27.454 -3.208 27.975
hybrid contribution -0.027 0.579 -0.250 0.631
sum 4.282 -26.875 -3.457 27.433
Atomic orbital electron populations
1.70139 1.08292 1.28559 1.49986 1.26071 0.95756 1.03919 0.93892
0.85211 0.77894 0.76629 0.79496 1.18662 1.21240 1.18623 1.21615
0.94348 0.90635 1.52868 0.89730 1.18476 0.88684 0.84386 0.93863
1.46190 1.11113 1.05533 1.73275 1.21417 0.90072 0.84769 0.75845
1.90635 1.19311 1.85253 1.51384 1.21930 0.93510 0.86748 1.05643
1.61724 1.33052 1.01732 1.30439 1.22186 0.98080 0.97481 0.89280
1.21805 0.93088 0.87137 1.02026 1.59129 1.29855 1.00527 1.29823
1.20320 0.87936 0.91261 0.90883 1.21468 1.02924 0.90088 1.06539
1.21460 0.92401 0.99463 0.89192 1.20812 0.96628 0.94337 1.12563
1.18040 0.82875 0.87858 0.75265 1.43593 1.09596 1.14111 1.72157
1.90809 1.71327 1.31386 1.53428 1.23179 1.00393 0.85555 0.89926
1.67755 1.07202 1.32573 1.18723 1.22504 0.98407 0.99926 0.85377
1.22336 0.93543 0.87422 1.03641 0.92321 0.99702 0.99717 0.75640
0.84873 0.89512 0.93440 0.91721 0.89750 0.94102 0.81476 0.82785
0.75221 0.75300 0.79528 0.93711 0.85926 0.92098 0.87026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16
2 C 0.00 0.18 5.46 84.65 0.46 0.64 16
3 Si 0.98 41.92 29.54 68.60 2.03 43.95 16
4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16
5 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16
6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16
7 C -0.56 -30.00 9.28 25.60 0.24 -29.76 16
8 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16
9 C 0.27 14.66 5.43 85.63 0.46 15.13 16
10 N -0.71 -29.05 5.55 -466.78 -2.59 -31.64 16
11 C 0.49 18.94 7.39 87.66 0.65 19.59 16
12 O -0.59 -28.58 14.68 -3.03 -0.04 -28.62 16
13 C 0.05 1.28 5.45 85.56 0.47 1.74 16
14 N -0.54 -13.62 4.40 -900.28 -3.96 -17.59 16
15 C 0.06 1.59 5.27 86.31 0.45 2.05 16
16 C 0.09 2.20 4.77 86.31 0.41 2.61 16
17 N -0.48 -9.50 4.72 -701.51 -3.31 -12.81 16
18 C 0.33 6.38 6.40 133.25 0.85 7.23 16
19 C -0.19 -2.75 9.14 22.22 0.20 -2.54 16
20 C 0.00 0.02 9.65 22.46 0.22 0.23 16
21 C -0.24 -3.71 5.89 -19.99 -0.12 -3.83 16
22 C 0.57 9.35 8.04 86.70 0.70 10.04 16
23 N -0.83 -6.23 8.83 -175.81 -1.55 -7.78 16
24 O -0.59 -14.40 17.24 -4.00 -0.07 -14.47 16
25 C 0.17 2.52 10.71 85.03 0.91 3.43 16
26 N -0.55 -11.33 8.66 -192.33 -1.67 -12.99 16
27 C 0.06 0.99 5.36 86.31 0.46 1.45 16
28 C 0.06 0.91 5.61 86.31 0.48 1.40 16
29 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16
30 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16
31 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16
32 H 0.41 13.45 8.32 -92.71 -0.77 12.68 16
33 H 0.13 2.46 8.02 -2.39 -0.02 2.44 16
34 H 0.09 1.70 8.12 -2.39 -0.02 1.68 16
35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16
36 H 0.06 2.30 6.09 -2.39 -0.01 2.29 16
37 H 0.08 2.18 7.81 -2.39 -0.02 2.16 16
38 H 0.04 1.23 8.04 -2.39 -0.02 1.21 16
39 H 0.17 1.53 7.15 -2.91 -0.02 1.51 16
40 H 0.15 2.13 7.73 -2.91 -0.02 2.11 16
41 H 0.42 0.77 6.88 -92.71 -0.64 0.13 16
42 H 0.41 2.13 8.93 -92.71 -0.83 1.30 16
43 H 0.19 1.36 6.41 -2.91 -0.02 1.34 16
44 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16
45 H 0.12 1.12 6.76 -2.38 -0.02 1.10 16
46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16
47 H 0.11 1.28 8.07 -2.39 -0.02 1.26 16
Total: -1.00 -83.78 387.00 -5.22 -89.00
By element:
Atomic # 1 Polarization: 20.59 SS G_CDS: -1.19 Total: 19.40 kcal
Atomic # 6 Polarization: 22.55 SS G_CDS: 6.85 Total: 29.41 kcal
Atomic # 7 Polarization: -125.86 SS G_CDS: -12.80 Total: -138.66 kcal
Atomic # 8 Polarization: -42.98 SS G_CDS: -0.11 Total: -43.10 kcal
Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal
Total: -83.78 -5.22 -89.00 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000917103600.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.179 kcal
(2) G-P(sol) polarization free energy of solvation -83.780 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.601 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.224 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.004 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.824 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds