Wall clock time and date at job start Wed Apr 1 2020 04:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48508 * 109.46943 * 274.80118 * 3 2 1 5 5 H 1.48498 * 109.46995 * 34.80139 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.80401 * 3 2 1 7 7 C 1.38820 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99867 * 187.46526 * 7 2 1 9 9 N 1.36939 * 119.99870 * 7.45800 * 7 2 1 10 10 C 1.47065 * 136.05604 * 6.54068 * 9 7 2 11 11 C 1.53500 * 87.98321 * 153.13380 * 10 9 7 12 12 N 1.46900 * 114.38584 * 139.66519 * 11 10 9 13 13 C 1.46898 * 111.00137 * 210.61700 * 12 11 10 14 14 C 1.53242 * 109.34102 * 172.74507 * 13 12 11 15 15 N 1.47078 * 108.51846 * 53.83255 * 14 13 12 16 16 C 1.34773 * 120.88243 * 128.83878 * 15 14 13 17 17 O 1.21283 * 120.00179 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00269 * 359.97309 * 16 15 14 19 19 C 1.50688 * 109.47423 * 180.02562 * 18 16 15 20 20 C 1.38249 * 119.97601 * 269.72501 * 19 18 16 21 21 C 1.38203 * 120.02339 * 179.72623 * 20 19 18 22 22 C 1.38459 * 119.97766 * 0.56790 * 21 20 19 23 23 F 1.35098 * 120.02807 * 179.68161 * 22 21 20 24 24 C 1.38462 * 119.94430 * 359.70537 * 22 21 20 25 25 C 1.38198 * 119.97693 * 0.02562 * 24 22 21 26 26 C 1.47081 * 118.23722 * 308.80694 * 15 14 13 27 27 C 1.46899 * 111.00111 * 86.31062 * 12 11 10 28 28 C 1.47058 * 136.05576 * 186.90334 * 9 7 2 29 29 H 0.96998 * 119.99720 * 359.97438 * 1 2 3 30 30 H 1.09003 * 113.46183 * 267.91111 * 10 9 7 31 31 H 1.08992 * 113.47023 * 38.35400 * 10 9 7 32 32 H 1.08997 * 114.20513 * 272.47626 * 11 10 9 33 33 H 1.09000 * 109.48916 * 292.70919 * 13 12 11 34 34 H 1.09001 * 109.48951 * 52.78642 * 13 12 11 35 35 H 1.08996 * 109.62552 * 294.11978 * 14 13 12 36 36 H 1.08997 * 109.62488 * 173.53696 * 14 13 12 37 37 H 1.09000 * 109.46592 * 300.00498 * 18 16 15 38 38 H 1.09001 * 109.47164 * 59.99547 * 18 16 15 39 39 H 1.07998 * 119.98383 * 359.97438 * 20 19 18 40 40 H 1.07998 * 120.01027 * 180.25319 * 21 20 19 41 41 H 1.08005 * 120.00975 * 180.02562 * 24 22 21 42 42 H 1.07997 * 119.98373 * 179.97438 * 25 24 22 43 43 H 1.08998 * 109.63196 * 291.48567 * 26 15 14 44 44 H 1.08993 * 109.78928 * 170.99323 * 26 15 14 45 45 H 1.08997 * 109.49299 * 307.21459 * 27 12 11 46 46 H 1.08997 * 109.48758 * 67.29313 * 27 12 11 47 47 H 1.09000 * 113.47406 * 321.64878 * 28 9 7 48 48 H 1.09005 * 113.46688 * 92.02731 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3963 2.1050 -1.3952 5 1 1.5022 2.6212 0.7991 6 1 3.5948 1.4130 0.5960 7 6 2.0103 -1.2022 -0.0005 8 1 3.0834 -1.2062 0.1210 9 7 1.3343 -2.3830 -0.1550 10 6 -0.0498 -2.7794 -0.4553 11 6 0.5093 -4.0773 -1.0546 12 7 -0.2755 -5.2783 -0.7392 13 6 0.5850 -6.4670 -0.6721 14 6 -0.2345 -7.6589 -0.1660 15 7 -1.4263 -7.8011 -1.0160 16 6 -1.7415 -8.9874 -1.5725 17 8 -2.7284 -9.0867 -2.2705 18 6 -0.8678 -10.1906 -1.3274 19 6 -1.4356 -11.3806 -2.0569 20 6 -2.3456 -12.2081 -1.4257 21 6 -2.8712 -13.2965 -2.0957 22 6 -2.4772 -13.5650 -3.3957 23 9 -2.9855 -14.6324 -4.0494 24 6 -1.5614 -12.7388 -4.0249 25 6 -1.0414 -11.6477 -3.3548 26 6 -2.2653 -6.6144 -1.2422 27 6 -1.3659 -5.4636 -1.7060 28 6 1.6714 -3.8129 -0.0873 29 1 -0.4849 0.8400 0.0004 30 1 -0.6583 -2.9391 0.4349 31 1 -0.5359 -2.1366 -1.1891 32 1 0.7790 -4.0032 -2.1080 33 1 0.9757 -6.6895 -1.6650 34 1 1.4130 -6.2784 0.0112 35 1 -0.5393 -7.4820 0.8654 36 1 0.3662 -8.5666 -0.2228 37 1 0.1394 -9.9883 -1.6914 38 1 -0.8322 -10.4021 -0.2587 39 1 -2.6489 -12.0015 -0.4100 40 1 -3.5852 -13.9404 -1.6038 41 1 -1.2536 -12.9469 -5.0390 42 1 -0.3268 -11.0035 -3.8453 43 1 -2.7653 -6.3372 -0.3142 44 1 -3.0094 -6.8294 -2.0090 45 1 -1.9527 -4.5475 -1.7724 46 1 -0.9480 -5.7001 -2.6845 47 1 2.6488 -4.0489 -0.5082 48 1 1.5223 -4.2477 0.9011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941655676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:18 Heat of formation + Delta-G solvation = 22.228179 kcal Electronic energy + Delta-G solvation = -29660.986600 eV Core-core repulsion = 25439.643402 eV Total energy + Delta-G solvation = -4221.343199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.18129 -40.58257 -39.37242 -38.56650 -36.86553 -34.00680 -33.02306 -31.95936 -31.47899 -31.20133 -28.55025 -27.51252 -26.09756 -24.95871 -23.41646 -23.31008 -22.86455 -22.19089 -21.04916 -19.23852 -18.97519 -17.97952 -17.46534 -16.80328 -16.75695 -16.36432 -15.87096 -15.65978 -15.49912 -15.17526 -14.97388 -14.80959 -14.41066 -14.27848 -14.07667 -13.90136 -13.81016 -13.66516 -13.11544 -12.77590 -12.48764 -12.42392 -12.23756 -12.21307 -11.96474 -11.63164 -11.49881 -11.34078 -11.31639 -11.16383 -11.07089 -10.82327 -10.65429 -10.07577 -9.99333 -9.84060 -9.43263 -9.22657 -8.88103 -8.86484 -8.78147 -8.07350 -6.91500 -5.81795 -3.12883 0.77390 0.91160 2.44255 2.76228 3.28675 3.36988 3.41595 3.44259 3.94002 4.00816 4.23701 4.32640 4.37173 4.46996 4.55561 4.74970 4.81341 4.87198 4.90099 5.05717 5.08373 5.15290 5.18701 5.28165 5.34220 5.39223 5.49661 5.54345 5.59092 5.65863 5.68415 5.77633 5.78300 5.86886 5.87511 5.88145 6.02361 6.13084 6.30848 6.35429 6.54377 6.56600 6.61496 7.00302 7.16686 7.24614 7.25344 7.48555 7.62077 7.93604 7.99325 9.00106 9.66430 10.61281 11.36981 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.039688 B = 0.001681 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.339630 B =16651.544661 C =16789.087310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.220 4.220 8 H 0.082 0.918 9 N -0.609 5.609 10 C 0.180 3.820 11 C 0.018 3.982 12 N -0.522 5.522 13 C 0.040 3.960 14 C 0.110 3.890 15 N -0.612 5.612 16 C 0.515 3.485 17 O -0.537 6.537 18 C -0.102 4.102 19 C -0.074 4.074 20 C -0.076 4.076 21 C -0.152 4.152 22 C 0.095 3.905 23 F -0.142 7.142 24 C -0.152 4.152 25 C -0.076 4.076 26 C 0.117 3.883 27 C 0.044 3.956 28 C 0.127 3.873 29 H 0.254 0.746 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.033 0.967 47 H 0.035 0.965 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 -26.496 -3.037 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.335 5.335 10 C 0.054 3.946 11 C -0.090 4.090 12 N -0.247 5.247 13 C -0.089 4.089 14 C -0.013 4.013 15 N -0.346 5.346 16 C 0.303 3.697 17 O -0.414 6.414 18 C -0.142 4.142 19 C -0.074 4.074 20 C -0.094 4.094 21 C -0.171 4.171 22 C 0.075 3.925 23 F -0.121 7.121 24 C -0.171 4.171 25 C -0.094 4.094 26 C -0.005 4.005 27 C -0.085 4.085 28 C 0.001 3.999 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.094 0.906 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.081 -26.130 -2.939 26.475 hybrid contribution 0.725 0.715 -0.753 1.267 sum -2.356 -25.415 -3.692 25.790 Atomic orbital electron populations 1.69864 1.05048 1.25479 1.55930 1.24845 0.95674 0.97685 1.02147 0.86089 0.78647 0.83384 0.77561 1.21540 1.21650 1.20527 1.18914 0.90476 0.81427 1.43886 0.90064 1.45466 1.06641 0.99210 1.82192 1.21911 0.88307 0.87690 0.96714 1.24056 0.96899 0.90390 0.97705 1.62119 1.11415 1.02465 1.48742 1.22436 0.95817 0.90310 1.00341 1.21949 0.85874 0.98471 0.95013 1.48221 1.27294 1.09362 1.49686 1.20458 0.85886 0.83802 0.79546 1.90724 1.27954 1.84395 1.38286 1.20707 0.99892 0.91129 1.02458 1.19360 0.97881 0.95596 0.94608 1.20853 0.95097 0.93340 1.00109 1.21097 1.02473 0.99906 0.93600 1.17732 0.96868 0.86303 0.91551 1.91495 1.85849 1.53668 1.81071 1.21103 0.98619 0.96157 1.01175 1.20859 0.99068 0.95922 0.93543 1.21746 0.93120 0.83243 1.02394 1.22421 0.93959 0.98755 0.93322 1.22409 0.94498 0.87181 0.95852 0.93576 0.94299 0.92717 0.91692 0.94809 0.89115 0.90135 0.89679 0.87681 0.87616 0.85089 0.84731 0.84728 0.85125 0.90551 0.88944 0.89055 0.94849 0.94719 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 11.86 55.49 0.66 -26.49 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.90 29.56 -169.99 -5.02 16.87 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.22 -6.11 10.73 -15.06 -0.16 -6.27 16 8 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 9 N -0.61 -15.47 3.76 -184.80 -0.70 -16.16 16 10 C 0.18 4.15 7.03 -8.51 -0.06 4.09 16 11 C 0.02 0.32 3.52 -67.59 -0.24 0.09 16 12 N -0.52 -7.47 4.62 -226.11 -1.05 -8.51 16 13 C 0.04 0.44 5.46 -3.70 -0.02 0.42 16 14 C 0.11 0.94 6.50 -3.60 -0.02 0.91 16 15 N -0.61 -6.42 3.01 -172.46 -0.52 -6.93 16 16 C 0.52 5.58 7.70 -10.99 -0.08 5.50 16 17 O -0.54 -7.91 15.49 5.55 0.09 -7.82 16 18 C -0.10 -0.72 4.20 -29.04 -0.12 -0.84 16 19 C -0.07 -0.62 4.37 -104.62 -0.46 -1.08 16 20 C -0.08 -0.62 9.70 -39.59 -0.38 -1.00 16 21 C -0.15 -1.29 10.03 -39.51 -0.40 -1.68 16 22 C 0.09 0.90 7.30 -39.42 -0.29 0.61 16 23 F -0.14 -1.44 17.27 2.25 0.04 -1.41 16 24 C -0.15 -1.31 10.03 -39.51 -0.40 -1.71 16 25 C -0.08 -0.64 9.70 -39.59 -0.38 -1.02 16 26 C 0.12 1.38 6.59 -3.60 -0.02 1.36 16 27 C 0.04 0.58 5.61 -3.70 -0.02 0.56 16 28 C 0.13 2.51 7.12 -8.52 -0.06 2.45 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 1.39 7.63 -51.93 -0.40 0.99 16 32 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.98 6.83 -51.93 -0.35 0.62 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.46 6.02 -51.93 -0.31 0.15 16 37 H 0.11 0.54 7.60 -51.93 -0.39 0.14 16 38 H 0.11 0.51 7.94 -51.93 -0.41 0.09 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 1.15 7.07 -51.93 -0.37 0.78 16 45 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 46 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.04 0.75 7.91 -51.93 -0.41 0.34 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -33.84 392.47 -11.07 -44.91 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -7.27 Total: -2.47 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -3.22 Total: 2.11 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -1.60 Total: -58.10 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.84 -11.07 -44.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941655676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.140 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds