Wall clock time and date at job start Wed Apr 1 2020 04:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48508 * 109.46943 * 274.80118 * 3 2 1 5 5 H 1.48498 * 109.46995 * 34.80139 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.80401 * 3 2 1 7 7 C 1.38820 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99867 * 187.46526 * 7 2 1 9 9 N 1.36939 * 119.99870 * 7.45800 * 7 2 1 10 10 C 1.47065 * 136.05604 * 6.54068 * 9 7 2 11 11 C 1.53500 * 87.98321 * 153.13380 * 10 9 7 12 12 N 1.46900 * 114.38584 * 139.66519 * 11 10 9 13 13 C 1.46898 * 111.00137 * 210.61700 * 12 11 10 14 14 C 1.53242 * 109.34102 * 172.74507 * 13 12 11 15 15 N 1.47078 * 108.51846 * 53.83255 * 14 13 12 16 16 C 1.34773 * 120.88243 * 128.83878 * 15 14 13 17 17 O 1.21283 * 120.00179 * 179.97438 * 16 15 14 18 18 C 1.50700 * 120.00269 * 359.97309 * 16 15 14 19 19 C 1.50688 * 109.47423 * 180.02562 * 18 16 15 20 20 C 1.38249 * 119.97601 * 269.72501 * 19 18 16 21 21 C 1.38203 * 120.02339 * 179.72623 * 20 19 18 22 22 C 1.38459 * 119.97766 * 0.56790 * 21 20 19 23 23 F 1.35098 * 120.02807 * 179.68161 * 22 21 20 24 24 C 1.38462 * 119.94430 * 359.70537 * 22 21 20 25 25 C 1.38198 * 119.97693 * 0.02562 * 24 22 21 26 26 C 1.47081 * 118.23722 * 308.80694 * 15 14 13 27 27 C 1.46899 * 111.00111 * 86.31062 * 12 11 10 28 28 C 1.47058 * 136.05576 * 186.90334 * 9 7 2 29 29 H 0.96998 * 119.99720 * 359.97438 * 1 2 3 30 30 H 1.09003 * 113.46183 * 267.91111 * 10 9 7 31 31 H 1.08992 * 113.47023 * 38.35400 * 10 9 7 32 32 H 1.08997 * 114.20513 * 272.47626 * 11 10 9 33 33 H 1.09000 * 109.48916 * 292.70919 * 13 12 11 34 34 H 1.09001 * 109.48951 * 52.78642 * 13 12 11 35 35 H 1.08996 * 109.62552 * 294.11978 * 14 13 12 36 36 H 1.08997 * 109.62488 * 173.53696 * 14 13 12 37 37 H 1.09000 * 109.46592 * 300.00498 * 18 16 15 38 38 H 1.09001 * 109.47164 * 59.99547 * 18 16 15 39 39 H 1.07998 * 119.98383 * 359.97438 * 20 19 18 40 40 H 1.07998 * 120.01027 * 180.25319 * 21 20 19 41 41 H 1.08005 * 120.00975 * 180.02562 * 24 22 21 42 42 H 1.07997 * 119.98373 * 179.97438 * 25 24 22 43 43 H 1.08998 * 109.63196 * 291.48567 * 26 15 14 44 44 H 1.08993 * 109.78928 * 170.99323 * 26 15 14 45 45 H 1.08997 * 109.49299 * 307.21459 * 27 12 11 46 46 H 1.08997 * 109.48758 * 67.29313 * 27 12 11 47 47 H 1.09000 * 113.47406 * 321.64878 * 28 9 7 48 48 H 1.09005 * 113.46688 * 92.02731 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3963 2.1050 -1.3952 5 1 1.5022 2.6212 0.7991 6 1 3.5948 1.4130 0.5960 7 6 2.0103 -1.2022 -0.0005 8 1 3.0834 -1.2062 0.1210 9 7 1.3343 -2.3830 -0.1550 10 6 -0.0498 -2.7794 -0.4553 11 6 0.5093 -4.0773 -1.0546 12 7 -0.2755 -5.2783 -0.7392 13 6 0.5850 -6.4670 -0.6721 14 6 -0.2345 -7.6589 -0.1660 15 7 -1.4263 -7.8011 -1.0160 16 6 -1.7415 -8.9874 -1.5725 17 8 -2.7284 -9.0867 -2.2705 18 6 -0.8678 -10.1906 -1.3274 19 6 -1.4356 -11.3806 -2.0569 20 6 -2.3456 -12.2081 -1.4257 21 6 -2.8712 -13.2965 -2.0957 22 6 -2.4772 -13.5650 -3.3957 23 9 -2.9855 -14.6324 -4.0494 24 6 -1.5614 -12.7388 -4.0249 25 6 -1.0414 -11.6477 -3.3548 26 6 -2.2653 -6.6144 -1.2422 27 6 -1.3659 -5.4636 -1.7060 28 6 1.6714 -3.8129 -0.0873 29 1 -0.4849 0.8400 0.0004 30 1 -0.6583 -2.9391 0.4349 31 1 -0.5359 -2.1366 -1.1891 32 1 0.7790 -4.0032 -2.1080 33 1 0.9757 -6.6895 -1.6650 34 1 1.4130 -6.2784 0.0112 35 1 -0.5393 -7.4820 0.8654 36 1 0.3662 -8.5666 -0.2228 37 1 0.1394 -9.9883 -1.6914 38 1 -0.8322 -10.4021 -0.2587 39 1 -2.6489 -12.0015 -0.4100 40 1 -3.5852 -13.9404 -1.6038 41 1 -1.2536 -12.9469 -5.0390 42 1 -0.3268 -11.0035 -3.8453 43 1 -2.7653 -6.3372 -0.3142 44 1 -3.0094 -6.8294 -2.0090 45 1 -1.9527 -4.5475 -1.7724 46 1 -0.9480 -5.7001 -2.6845 47 1 2.6488 -4.0489 -0.5082 48 1 1.5223 -4.2477 0.9011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941655676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:17 Heat of formation + Delta-G solvation = 1.052166 kcal Electronic energy + Delta-G solvation = -29661.904861 eV Core-core repulsion = 25439.643402 eV Total energy + Delta-G solvation = -4222.261460 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.89640 -41.42844 -40.41710 -39.61052 -38.06095 -35.21619 -34.01866 -33.55672 -32.08714 -32.06650 -29.92756 -28.64083 -27.26171 -26.53727 -24.52522 -24.31963 -24.01118 -23.05132 -21.94911 -20.80187 -19.86766 -18.77717 -18.63203 -18.24231 -17.45184 -17.14025 -16.95178 -16.69820 -16.56798 -16.37090 -16.05812 -15.97906 -15.79457 -15.26633 -14.95880 -14.68114 -14.60010 -14.42128 -14.37944 -14.10326 -13.82258 -13.38126 -13.29411 -13.10705 -12.97302 -12.87897 -12.81145 -12.66256 -12.63466 -12.33950 -12.17381 -12.11224 -11.90676 -11.77682 -11.71978 -10.97698 -10.86748 -10.82509 -10.03028 -9.77475 -9.52405 -9.21512 -8.93562 -7.93585 -5.25883 0.13620 0.31556 1.46150 1.48291 1.57334 1.66113 1.98083 2.45266 2.65228 2.89784 3.30973 3.31284 3.51985 3.64237 3.65759 3.73760 3.77618 3.98660 4.01141 4.11752 4.22648 4.25443 4.29701 4.34078 4.40946 4.45999 4.58994 4.64715 4.65080 4.73107 4.79584 4.84764 4.91103 4.93690 4.99215 5.00414 5.06429 5.16427 5.18152 5.23258 5.27383 5.36840 5.47444 5.50260 5.53876 5.89041 5.94527 6.15122 6.18253 6.48652 6.89179 7.19619 7.58707 8.60509 9.25776 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.039688 B = 0.001681 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.339630 B =16651.544661 C =16789.087310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.981 3.019 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.229 4.229 8 H 0.089 0.911 9 N -0.643 5.643 10 C 0.179 3.821 11 C 0.056 3.944 12 N -0.528 5.528 13 C 0.036 3.964 14 C 0.114 3.886 15 N -0.612 5.612 16 C 0.514 3.486 17 O -0.583 6.583 18 C -0.095 4.095 19 C -0.082 4.082 20 C -0.083 4.083 21 C -0.160 4.160 22 C 0.071 3.929 23 F -0.152 7.152 24 C -0.161 4.161 25 C -0.085 4.085 26 C 0.125 3.875 27 C 0.050 3.950 28 C 0.134 3.866 29 H 0.249 0.751 30 H 0.020 0.980 31 H 0.018 0.982 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.032 0.968 47 H 0.054 0.946 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 -28.221 -2.230 28.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.809 3.191 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.357 4.357 8 H 0.107 0.893 9 N -0.369 5.369 10 C 0.052 3.948 11 C -0.054 4.054 12 N -0.254 5.254 13 C -0.092 4.092 14 C -0.008 4.008 15 N -0.345 5.345 16 C 0.304 3.696 17 O -0.462 6.462 18 C -0.134 4.134 19 C -0.083 4.083 20 C -0.101 4.101 21 C -0.178 4.178 22 C 0.052 3.948 23 F -0.131 7.131 24 C -0.179 4.179 25 C -0.103 4.103 26 C 0.001 3.999 27 C -0.079 4.079 28 C 0.009 3.991 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.050 0.950 47 H 0.072 0.928 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.958 -27.907 -2.116 28.003 hybrid contribution 0.056 1.183 -1.002 1.551 sum -0.902 -26.724 -3.118 26.921 Atomic orbital electron populations 1.70054 1.06673 1.25753 1.57798 1.25726 0.96524 1.01195 1.02726 0.85016 0.77916 0.78840 0.77299 1.21431 1.22228 1.18759 1.19356 0.91184 0.82774 1.42428 0.89313 1.45853 1.07691 1.00956 1.82447 1.21801 0.87503 0.90067 0.95407 1.23434 0.95281 0.89834 0.96818 1.62016 1.11747 1.02679 1.48949 1.22604 0.95963 0.89479 1.01129 1.22126 0.85122 0.99075 0.94505 1.48309 1.27586 1.08833 1.49785 1.21133 0.85603 0.84528 0.78342 1.90715 1.30148 1.85093 1.40290 1.20791 0.99931 0.88332 1.04332 1.19628 0.97842 0.96056 0.94773 1.21155 0.94836 0.93028 1.01037 1.21340 1.02703 1.00399 0.93381 1.18029 0.97843 0.86646 0.92296 1.91464 1.86107 1.54186 1.81335 1.21324 0.98499 0.96265 1.01857 1.21134 0.99384 0.95927 0.93837 1.21521 0.92870 0.83481 1.01996 1.22353 0.93662 0.98803 0.93104 1.22500 0.95934 0.83868 0.96772 0.94263 0.96192 0.96365 0.91998 0.94220 0.88233 0.89644 0.85363 0.84918 0.84508 0.83200 0.83474 0.83675 0.83604 0.90597 0.89878 0.90625 0.94959 0.92766 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.36 11.86 21.65 0.26 -58.11 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 3 Si 0.98 45.45 29.56 68.60 2.03 47.48 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.23 -12.79 10.73 84.04 0.90 -11.89 16 8 H 0.09 4.67 7.84 -2.91 -0.02 4.64 16 9 N -0.64 -32.78 3.76 -738.58 -2.78 -35.56 16 10 C 0.18 8.49 7.03 83.18 0.58 9.07 16 11 C 0.06 1.95 3.52 45.39 0.16 2.11 16 12 N -0.53 -14.27 4.62 -869.28 -4.02 -18.29 16 13 C 0.04 0.67 5.46 86.38 0.47 1.14 16 14 C 0.11 1.43 6.50 86.35 0.56 2.00 16 15 N -0.61 -11.06 3.01 -817.95 -2.46 -13.53 16 16 C 0.51 9.67 7.70 87.66 0.68 10.34 16 17 O -0.58 -16.43 15.49 -3.04 -0.05 -16.47 16 18 C -0.09 -0.92 4.20 29.10 0.12 -0.80 16 19 C -0.08 -1.17 4.37 -19.86 -0.09 -1.26 16 20 C -0.08 -1.17 9.70 22.26 0.22 -0.95 16 21 C -0.16 -2.53 10.03 22.31 0.22 -2.31 16 22 C 0.07 1.31 7.30 22.38 0.16 1.48 16 23 F -0.15 -3.11 17.27 44.97 0.78 -2.34 16 24 C -0.16 -2.64 10.03 22.31 0.22 -2.41 16 25 C -0.08 -1.26 9.70 22.26 0.22 -1.04 16 26 C 0.12 2.81 6.59 86.35 0.57 3.38 16 27 C 0.05 1.28 5.61 86.39 0.48 1.76 16 28 C 0.13 5.07 7.12 83.18 0.59 5.66 16 29 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.02 0.97 7.63 -2.39 -0.02 0.95 16 32 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 33 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 1.72 6.83 -2.39 -0.02 1.70 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.13 0.57 6.02 -2.39 -0.01 0.56 16 37 H 0.13 0.61 7.60 -2.39 -0.02 0.59 16 38 H 0.14 0.53 7.94 -2.39 -0.02 0.51 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 42 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 2.06 7.07 -2.39 -0.02 2.04 16 45 H 0.08 2.15 8.11 -2.39 -0.02 2.14 16 46 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.05 1.83 7.91 -2.38 -0.02 1.82 16 Total: -1.00 -76.51 392.47 1.25 -75.25 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.96 Total: 8.73 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.55 Total: 12.83 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -9.00 Total: -125.49 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.05 Total: -16.47 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -76.51 1.25 -75.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941655676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.305 kcal (2) G-P(sol) polarization free energy of solvation -76.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds