Wall clock time and date at job start Wed Apr 1 2020 04:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99747 * 2 1 4 4 H 1.48508 * 109.46772 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47150 * 299.99762 * 3 2 1 6 6 H 1.48498 * 109.47499 * 60.00324 * 3 2 1 7 7 C 1.38817 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00011 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99544 * 0.02562 * 7 2 1 10 10 C 1.47589 * 134.48874 * 179.97438 * 9 7 2 11 11 C 1.53941 * 86.11472 * 155.36322 * 10 9 7 12 12 N 1.46901 * 113.74057 * 137.95713 * 11 10 9 13 13 C 1.46900 * 111.00015 * 181.92452 * 12 11 10 14 14 C 1.53238 * 109.34064 * 187.25177 * 13 12 11 15 15 N 1.47076 * 108.52243 * 306.16982 * 14 13 12 16 16 C 1.34774 * 120.88377 * 231.18866 * 15 14 13 17 17 O 1.21557 * 119.99836 * 5.78729 * 16 15 14 18 18 C 1.47839 * 120.00334 * 185.78948 * 16 15 14 19 19 C 1.39583 * 120.14729 * 219.69409 * 18 16 15 20 20 C 1.37949 * 119.85639 * 179.97438 * 19 18 16 21 21 C 1.38362 * 120.14695 * 359.97438 * 20 19 18 22 22 C 1.50694 * 119.85907 * 180.02562 * 21 20 19 23 23 F 1.39900 * 109.47572 * 89.99754 * 22 21 20 24 24 C 1.38361 * 120.28978 * 0.27833 * 21 20 19 25 25 C 1.37966 * 120.14236 * 359.48822 * 24 21 20 26 26 C 1.47077 * 118.23814 * 51.45523 * 15 14 13 27 27 C 1.46895 * 111.00107 * 306.22226 * 12 11 10 28 28 C 1.47812 * 134.46360 * 359.86781 * 9 7 2 29 29 H 0.96998 * 120.00219 * 359.97438 * 1 2 3 30 30 H 1.09001 * 113.76307 * 41.06325 * 10 9 7 31 31 H 1.08996 * 113.77195 * 269.66557 * 10 9 7 32 32 H 1.09010 * 113.74221 * 269.15325 * 11 10 9 33 33 H 1.08994 * 109.49450 * 67.28926 * 13 12 11 34 34 H 1.09006 * 109.49399 * 307.21171 * 13 12 11 35 35 H 1.09001 * 109.63146 * 186.46057 * 14 13 12 36 36 H 1.09004 * 109.62863 * 65.87914 * 14 13 12 37 37 H 1.08001 * 120.06880 * 0.02562 * 19 18 16 38 38 H 1.07995 * 119.93114 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.46708 * 329.99980 * 22 21 20 40 40 H 1.08994 * 109.47279 * 210.00477 * 22 21 20 41 41 H 1.08004 * 119.93219 * 179.74297 * 24 21 20 42 42 H 1.08005 * 120.07092 * 180.25073 * 25 24 21 43 43 H 1.08998 * 109.62867 * 68.25443 * 26 15 14 44 44 H 1.09002 * 109.63411 * 188.83653 * 26 15 14 45 45 H 1.09004 * 109.49411 * 292.71233 * 27 12 11 46 46 H 1.09001 * 109.48974 * 52.78685 * 27 12 11 47 47 H 1.09005 * 113.76855 * 90.37477 * 28 9 7 48 48 H 1.08998 * 113.83273 * 318.91813 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7201 -3.8102 0.0005 11 6 0.3470 -4.0829 0.6408 12 7 -0.3352 -5.2646 0.0964 13 6 -1.6555 -5.4420 0.7155 14 6 -2.2551 -6.7761 0.2584 15 7 -2.2478 -6.8122 -1.2119 16 6 -3.3650 -7.1156 -1.9020 17 8 -4.4204 -7.2605 -1.3166 18 6 -3.3070 -7.2721 -3.3709 19 6 -4.3403 -6.7798 -4.1698 20 6 -4.2798 -6.9286 -5.5399 21 6 -3.1975 -7.5638 -6.1227 22 6 -3.1377 -7.7223 -7.6200 23 9 -2.4929 -6.6147 -8.1810 24 6 -2.1723 -8.0587 -5.3362 25 6 -2.2183 -7.9122 -3.9652 26 6 -0.9875 -6.5144 -1.9090 27 6 -0.4392 -5.1850 -1.3667 28 6 -0.1058 -2.7571 0.0025 29 1 -0.4850 0.8400 0.0004 30 1 2.5623 -4.0323 0.6559 31 1 1.8320 -4.2351 -0.9969 32 1 0.3593 -4.0639 1.7307 33 1 -2.3115 -4.6258 0.4134 34 1 -1.5513 -5.4429 1.8006 35 1 -3.2794 -6.8608 0.6216 36 1 -1.6563 -7.5994 0.6479 37 1 -5.1851 -6.2827 -3.7162 38 1 -5.0784 -6.5479 -6.1591 39 1 -4.1498 -7.7938 -8.0185 40 1 -2.5849 -8.6285 -7.8677 41 1 -1.3322 -8.5572 -5.7969 42 1 -1.4154 -8.2953 -3.3527 43 1 -0.2691 -7.3130 -1.7239 44 1 -1.1731 -6.4260 -2.9795 45 1 -1.1122 -4.3722 -1.6398 46 1 0.5472 -4.9993 -1.7918 47 1 -0.5312 -2.8722 -0.9945 48 1 -0.7189 -2.1399 0.6593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941682235.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:25 Heat of formation + Delta-G solvation = 26.851838 kcal Electronic energy + Delta-G solvation = -30533.553232 eV Core-core repulsion = 26312.410530 eV Total energy + Delta-G solvation = -4221.142702 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -47.98127 -40.79563 -39.36673 -38.48762 -36.62751 -33.98479 -32.83353 -31.86067 -31.46640 -30.89084 -28.33277 -27.26700 -26.05975 -24.90045 -23.97582 -23.19377 -22.93753 -22.28320 -21.11723 -19.68387 -18.62407 -17.43613 -17.05378 -16.75402 -16.56636 -16.22563 -16.20209 -15.49868 -15.36264 -15.04075 -14.87089 -14.78924 -14.67091 -14.36812 -14.10989 -13.79790 -13.77042 -13.17397 -13.14817 -12.87093 -12.36054 -12.25026 -12.04645 -11.86777 -11.73149 -11.61669 -11.48199 -11.31745 -11.20113 -11.01673 -10.83568 -10.74425 -10.55519 -10.18390 -10.01008 -9.90214 -9.51881 -9.34180 -9.24546 -8.84019 -8.75062 -7.85702 -6.87854 -5.78755 -3.11665 0.49912 0.98608 2.52023 2.80536 3.37163 3.38793 3.42398 3.45191 3.99202 4.09679 4.22910 4.28434 4.46152 4.47359 4.61052 4.65716 4.86850 4.99370 5.01161 5.12012 5.16827 5.20598 5.24465 5.30913 5.36733 5.37463 5.47408 5.52042 5.59777 5.63403 5.69843 5.81703 5.85435 5.95432 5.99153 6.03132 6.09176 6.13841 6.30593 6.36893 6.46429 6.53405 6.60561 6.97619 7.18651 7.25634 7.35107 7.50427 7.59448 7.95542 7.98277 9.01819 9.68575 10.56820 11.37888 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010906 B = 0.002648 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.666312 B =10572.213423 C =12093.658670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.081 0.919 9 N -0.609 5.609 10 C 0.125 3.875 11 C 0.035 3.965 12 N -0.529 5.529 13 C 0.042 3.958 14 C 0.118 3.882 15 N -0.603 5.603 16 C 0.559 3.441 17 O -0.539 6.539 18 C -0.115 4.115 19 C -0.067 4.067 20 C -0.102 4.102 21 C -0.119 4.119 22 C 0.105 3.895 23 F -0.209 7.209 24 C -0.104 4.104 25 C -0.091 4.091 26 C 0.103 3.897 27 C 0.034 3.966 28 C 0.133 3.867 29 H 0.253 0.747 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.101 0.899 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.048 0.952 46 H 0.094 0.906 47 H 0.028 0.972 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.845 -20.614 -10.439 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.349 4.349 8 H 0.099 0.901 9 N -0.336 5.336 10 C -0.002 4.002 11 C -0.074 4.074 12 N -0.253 5.253 13 C -0.087 4.087 14 C -0.004 4.004 15 N -0.336 5.336 16 C 0.347 3.653 17 O -0.417 6.417 18 C -0.118 4.118 19 C -0.086 4.086 20 C -0.120 4.120 21 C -0.119 4.119 22 C 0.050 3.950 23 F -0.190 7.190 24 C -0.122 4.122 25 C -0.109 4.109 26 C -0.020 4.020 27 C -0.095 4.095 28 C 0.006 3.994 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.119 0.881 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.112 0.888 47 H 0.046 0.954 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.054 -20.723 -9.996 24.065 hybrid contribution 0.092 1.847 -0.327 1.878 sum -6.962 -18.876 -10.323 22.613 Atomic orbital electron populations 1.69833 1.05057 1.25212 1.56718 1.24796 0.95666 0.97581 1.02450 0.86050 0.78757 0.83704 0.77277 1.20409 1.21749 1.21686 1.19055 0.90278 0.81865 1.43742 0.90121 1.45827 1.02230 0.99421 1.86081 1.22692 0.94575 0.85879 0.97021 1.24296 0.96013 0.87668 0.99385 1.62044 1.18373 1.40698 1.04228 1.22392 0.90262 0.96128 0.99913 1.21790 1.02281 0.97978 0.78360 1.48093 1.09977 1.68033 1.07458 1.18342 0.83429 0.76743 0.86761 1.90776 1.28995 1.51407 1.70525 1.20004 0.96397 1.02080 0.93287 1.21218 0.97310 0.97007 0.93068 1.21023 0.98017 0.98323 0.94670 1.20427 0.95811 0.99907 0.95805 1.20834 0.98596 0.86840 0.88711 1.92841 1.83872 1.56186 1.86064 1.21004 0.98171 0.99657 0.93332 1.21455 0.96771 0.97638 0.95054 1.22392 0.84622 0.97942 0.97003 1.22699 1.02059 0.95461 0.89238 1.22917 0.88596 0.90582 0.97293 0.93729 0.93606 0.94535 0.88142 0.94028 0.89531 0.88832 0.90620 0.84691 0.85013 0.89706 0.89668 0.84972 0.84564 0.90365 0.88964 0.93339 0.88764 0.95397 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.52 11.39 55.49 0.63 -26.89 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 7 C -0.22 -6.22 10.70 -15.06 -0.16 -6.38 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -15.50 3.70 -177.87 -0.66 -16.16 16 10 C 0.12 2.49 8.40 -2.96 -0.02 2.47 16 11 C 0.03 0.64 4.05 -69.92 -0.28 0.36 16 12 N -0.53 -7.91 4.77 -227.94 -1.09 -8.99 16 13 C 0.04 0.57 5.55 -3.70 -0.02 0.55 16 14 C 0.12 1.44 6.61 -3.60 -0.02 1.42 16 15 N -0.60 -7.55 3.00 -173.30 -0.52 -8.07 16 16 C 0.56 7.63 7.34 -12.33 -0.09 7.54 16 17 O -0.54 -8.99 16.38 5.32 0.09 -8.90 16 18 C -0.11 -1.30 5.14 -104.97 -0.54 -1.84 16 19 C -0.07 -0.71 9.64 -39.19 -0.38 -1.09 16 20 C -0.10 -0.88 9.68 -39.64 -0.38 -1.27 16 21 C -0.12 -0.96 5.60 -104.53 -0.59 -1.54 16 22 C 0.10 0.64 7.67 36.00 0.28 0.92 16 23 F -0.21 -2.02 17.34 2.25 0.04 -1.98 16 24 C -0.10 -0.81 9.68 -39.64 -0.38 -1.19 16 25 C -0.09 -0.82 7.41 -39.18 -0.29 -1.11 16 26 C 0.10 1.15 5.03 -3.37 -0.02 1.13 16 27 C 0.03 0.49 4.65 -3.47 -0.02 0.47 16 28 C 0.13 3.09 6.81 -2.83 -0.02 3.07 16 29 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.70 5.93 -51.93 -0.31 0.39 16 32 H 0.10 1.84 8.11 -51.92 -0.42 1.42 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 35 H 0.09 1.19 7.04 -51.93 -0.37 0.82 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 40 H 0.09 0.33 8.08 -51.93 -0.42 -0.08 16 41 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.14 1.02 6.49 -52.48 -0.34 0.68 16 43 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 44 H 0.09 0.94 4.89 -51.93 -0.25 0.69 16 45 H 0.05 0.82 6.38 -51.93 -0.33 0.49 16 46 H 0.09 1.38 5.81 -51.93 -0.30 1.08 16 47 H 0.03 0.68 5.76 -51.93 -0.30 0.38 16 48 H 0.07 1.82 7.16 -51.93 -0.37 1.45 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -34.06 381.53 -10.57 -44.63 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.75 Total: 0.23 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -3.04 Total: 3.17 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -1.63 Total: -60.10 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.06 -10.57 -44.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941682235.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.479 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds