Wall clock time and date at job start Wed Apr 1 2020 04:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00092 * 2 1 4 4 H 1.48503 * 109.47071 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46981 * 300.00087 * 3 2 1 6 6 H 1.48497 * 109.46786 * 60.00003 * 3 2 1 7 7 C 1.38810 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00045 * 169.47779 * 7 2 1 9 9 N 1.36935 * 120.00080 * 349.46966 * 7 2 1 10 10 C 1.46926 * 120.64291 * 328.89491 * 9 7 2 11 11 C 1.53184 * 108.78355 * 233.64393 * 10 9 7 12 12 C 1.53033 * 109.33740 * 305.38229 * 11 10 9 13 13 C 1.53050 * 109.54731 * 61.30172 * 12 11 10 14 14 C 1.46935 * 120.64161 * 148.90688 * 9 7 2 15 15 C 1.53038 * 109.44079 * 181.24135 * 12 11 10 16 16 C 1.53193 * 109.32945 * 58.68815 * 15 12 11 17 17 N 1.46924 * 108.77009 * 54.64830 * 16 15 12 18 18 C 1.34777 * 120.64633 * 126.33508 * 17 16 15 19 19 O 1.21549 * 119.99427 * 4.01105 * 18 17 16 20 20 C 1.47841 * 120.00019 * 184.01611 * 18 17 16 21 21 C 1.39559 * 120.54841 * 134.76638 * 20 18 17 22 22 N 1.31650 * 120.62906 * 179.97438 * 21 20 18 23 23 C 1.31950 * 121.90435 * 0.02562 * 22 21 20 24 24 C 1.38534 * 121.04025 * 359.71525 * 23 22 21 25 25 F 1.35105 * 120.37139 * 180.29311 * 24 23 22 26 26 C 1.38614 * 119.25760 * 0.53958 * 24 23 22 27 27 C 1.46931 * 118.71514 * 306.60031 * 17 16 15 28 28 C 1.52759 * 109.01179 * 53.34115 * 27 17 16 29 29 H 0.97003 * 119.99851 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.58622 * 113.84907 * 10 9 7 31 31 H 1.09001 * 109.69760 * 353.49967 * 10 9 7 32 32 H 1.09000 * 109.49603 * 185.42334 * 11 10 9 33 33 H 1.09007 * 109.49387 * 65.33564 * 11 10 9 34 34 H 1.08991 * 109.49484 * 58.63501 * 13 12 11 35 35 H 1.08998 * 109.49389 * 178.72994 * 13 12 11 36 36 H 1.08998 * 109.58966 * 246.13378 * 14 9 7 37 37 H 1.09006 * 109.58078 * 6.41249 * 14 9 7 38 38 H 1.08999 * 109.49642 * 298.73343 * 15 12 11 39 39 H 1.08996 * 109.49680 * 178.64228 * 15 12 11 40 40 H 1.08996 * 109.58418 * 294.85871 * 16 15 12 41 41 H 1.08998 * 109.70324 * 174.50272 * 16 15 12 42 42 H 1.08007 * 119.68314 * 0.02562 * 21 20 18 43 43 H 1.08001 * 119.47553 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.86889 * 179.75218 * 26 24 23 45 45 H 1.09000 * 109.58671 * 173.17810 * 27 17 16 46 46 H 1.08999 * 109.58938 * 293.60023 * 27 17 16 47 47 H 1.09007 * 109.56020 * 185.56189 * 28 27 17 48 48 H 1.08994 * 109.35786 * 65.51835 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0766 -1.2099 -0.1713 9 7 1.3429 -2.3781 0.2157 10 6 0.1518 -2.4162 1.0751 11 6 0.3542 -3.4872 2.1514 12 6 0.6888 -4.8219 1.4816 13 6 1.9888 -4.6838 0.6858 14 6 1.8042 -3.6264 -0.4072 15 6 0.8611 -5.9006 2.5534 16 6 -0.4302 -6.0151 3.3698 17 7 -1.5513 -6.2523 2.4503 18 6 -2.3780 -7.3013 2.6310 19 8 -2.2445 -8.0199 3.6022 20 6 -3.4470 -7.5780 1.6480 21 6 -3.6714 -8.8773 1.1909 22 7 -4.6233 -9.1256 0.3160 23 6 -5.3974 -8.1700 -0.1623 24 6 -5.2429 -6.8548 0.2446 25 9 -6.0470 -5.8880 -0.2494 26 6 -4.2508 -6.5411 1.1604 27 6 -1.7504 -5.3271 1.3263 28 6 -0.4478 -5.2166 0.5360 29 1 -0.4850 0.8401 0.0004 30 1 -0.7241 -2.6623 0.4749 31 1 0.0092 -1.4448 1.5486 32 1 -0.5596 -3.5927 2.7361 33 1 1.1742 -3.1937 2.8070 34 1 2.7939 -4.3792 1.3543 35 1 2.2381 -5.6408 0.2276 36 1 1.0626 -3.9712 -1.1277 37 1 2.7532 -3.4526 -0.9144 38 1 1.6855 -5.6297 3.2130 39 1 1.0756 -6.8567 2.0761 40 1 -0.5981 -5.0892 3.9197 41 1 -0.3497 -6.8466 4.0700 42 1 -3.0588 -9.6871 1.5591 43 1 -6.1668 -8.4179 -0.8785 44 1 -4.1048 -5.5239 1.4925 45 1 -2.5394 -5.7058 0.6766 46 1 -2.0280 -4.3441 1.7069 47 1 -0.5550 -4.4587 -0.2401 48 1 -0.2212 -6.1787 0.0767 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957532807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:57 Heat of formation + Delta-G solvation = -13.092212 kcal Electronic energy + Delta-G solvation = -31758.803941 eV Core-core repulsion = 27535.929135 eV Total energy + Delta-G solvation = -4222.874806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.33581 -41.23624 -39.97394 -38.62916 -36.04244 -34.02265 -33.05842 -31.54557 -31.16635 -30.88121 -29.95576 -28.17833 -25.78742 -24.67519 -24.21847 -23.40076 -22.98695 -22.01271 -20.96664 -19.76618 -18.37810 -17.87093 -17.48789 -17.39537 -16.85640 -16.33411 -16.17882 -15.87923 -15.30985 -14.96079 -14.43401 -14.32005 -14.18198 -14.06752 -13.86968 -13.76278 -13.62279 -13.51916 -13.30442 -12.96928 -12.72961 -12.64349 -12.26217 -11.69064 -11.55877 -11.50951 -11.15679 -11.06452 -10.78192 -10.71596 -10.58822 -10.43616 -10.28972 -10.16434 -10.08464 -9.83534 -9.66521 -9.61143 -9.42376 -9.40326 -8.66295 -8.49133 -6.63467 -5.82279 -3.29346 0.20691 0.53747 2.37185 2.72795 3.19033 3.33217 3.41421 3.42949 3.55724 3.94013 4.08324 4.26215 4.30141 4.45289 4.65104 4.76833 4.97020 4.99068 5.13523 5.14196 5.27294 5.29017 5.35953 5.38880 5.43185 5.45908 5.62671 5.71376 5.81856 5.84966 5.90589 6.02918 6.05829 6.08943 6.15975 6.23107 6.31712 6.45210 6.49413 6.58580 6.70120 6.76695 6.85501 6.95180 7.17189 7.30811 7.34496 7.65636 7.75957 7.86748 8.44400 9.19613 9.81114 10.38852 11.25473 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014154 B = 0.003057 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.787959 B = 9157.770986 C =10316.539780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.063 0.937 9 N -0.591 5.591 10 C 0.172 3.828 11 C -0.135 4.135 12 C -0.047 4.047 13 C -0.121 4.121 14 C 0.144 3.856 15 C -0.123 4.123 16 C 0.112 3.888 17 N -0.593 5.593 18 C 0.563 3.437 19 O -0.534 6.534 20 C -0.146 4.146 21 C 0.140 3.860 22 N -0.457 5.457 23 C 0.092 3.908 24 C 0.048 3.952 25 F -0.123 7.123 26 C -0.082 4.082 27 C 0.090 3.910 28 C -0.125 4.125 29 H 0.253 0.747 30 H 0.018 0.982 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.018 0.982 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.172 0.828 43 H 0.173 0.827 44 H 0.160 0.840 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.552 -15.126 2.452 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.081 0.919 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.174 4.174 12 C -0.047 4.047 13 C -0.161 4.161 14 C 0.018 3.982 15 C -0.162 4.162 16 C -0.009 4.009 17 N -0.325 5.325 18 C 0.350 3.650 19 O -0.412 6.412 20 C -0.151 4.151 21 C -0.018 4.018 22 N -0.164 5.164 23 C -0.067 4.067 24 C 0.026 3.974 25 F -0.101 7.101 26 C -0.108 4.108 27 C -0.031 4.031 28 C -0.162 4.162 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.189 0.811 43 H 0.190 0.810 44 H 0.177 0.823 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.111 0.889 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.717 -16.156 2.657 18.100 hybrid contribution 0.396 2.107 0.085 2.146 sum -7.321 -14.048 2.743 16.077 Atomic orbital electron populations 1.69967 1.05211 1.25289 1.54535 1.25127 0.95403 0.98299 1.00606 0.86220 0.79311 0.83952 0.77274 1.20293 1.21671 1.21612 1.19220 0.90849 0.83977 1.43964 0.91902 1.43991 1.31477 1.03352 1.52586 1.20789 0.88100 0.96944 0.89503 1.22363 0.99859 0.95522 0.99669 1.20394 0.95194 0.94798 0.94350 1.22038 0.96158 0.98786 0.99072 1.20932 0.97519 0.87139 0.92596 1.22023 0.96502 0.99383 0.98250 1.21734 0.84932 1.02440 0.91842 1.48077 1.28974 1.26450 1.28984 1.17946 0.81368 0.80691 0.85009 1.90801 1.71944 1.48578 1.29876 1.20912 0.98914 0.95083 1.00184 1.22973 0.93343 0.94520 0.90936 1.67834 1.04373 1.34448 1.09756 1.23156 0.98235 0.86943 0.98339 1.18640 0.92844 0.87484 0.98439 1.91581 1.70955 1.61674 1.85930 1.22016 0.92998 1.01138 0.94682 1.22247 0.99451 0.93568 0.87878 1.21957 0.93585 1.01991 0.98705 0.93715 0.96406 0.89546 0.93303 0.92632 0.92286 0.93373 0.96423 0.93090 0.90718 0.92054 0.90660 0.89259 0.81062 0.80988 0.82286 0.89760 0.89830 0.88899 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.17 11.02 55.49 0.61 -24.55 16 2 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 3 Si 0.90 21.15 29.57 -169.99 -5.03 16.12 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.60 9.59 -15.06 -0.14 -6.75 16 8 H 0.06 1.65 7.85 -52.48 -0.41 1.24 16 9 N -0.59 -13.85 2.99 -172.32 -0.51 -14.36 16 10 C 0.17 3.73 4.79 -3.72 -0.02 3.71 16 11 C -0.14 -2.27 4.14 -26.62 -0.11 -2.38 16 12 C -0.05 -0.68 0.51 -154.43 -0.08 -0.76 16 13 C -0.12 -1.93 4.90 -26.61 -0.13 -2.06 16 14 C 0.14 2.82 6.05 -3.71 -0.02 2.79 16 15 C -0.12 -1.52 4.90 -26.61 -0.13 -1.65 16 16 C 0.11 1.36 5.96 -3.71 -0.02 1.33 16 17 N -0.59 -7.22 2.98 -174.15 -0.52 -7.74 16 18 C 0.56 7.20 7.32 -12.33 -0.09 7.11 16 19 O -0.53 -8.28 16.43 5.32 0.09 -8.19 16 20 C -0.15 -1.58 5.20 -104.83 -0.54 -2.13 16 21 C 0.14 1.44 10.86 -17.14 -0.19 1.25 16 22 N -0.46 -4.65 10.34 -12.86 -0.13 -4.78 16 23 C 0.09 0.80 11.16 -17.39 -0.19 0.61 16 24 C 0.05 0.45 7.33 -39.33 -0.29 0.16 16 25 F -0.12 -1.23 17.28 2.25 0.04 -1.19 16 26 C -0.08 -0.80 7.44 -38.80 -0.29 -1.09 16 27 C 0.09 1.08 4.74 -3.93 -0.02 1.06 16 28 C -0.12 -1.70 4.13 -26.84 -0.11 -1.81 16 29 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.02 0.40 6.72 -51.93 -0.35 0.05 16 31 H 0.09 2.18 6.08 -51.93 -0.32 1.87 16 32 H 0.05 0.74 5.00 -51.93 -0.26 0.48 16 33 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.02 0.35 6.66 -51.93 -0.35 0.00 16 37 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.90 6.66 -51.93 -0.35 0.56 16 41 H 0.09 1.10 7.03 -51.93 -0.36 0.74 16 42 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 43 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 44 H 0.16 1.43 6.62 -52.49 -0.35 1.08 16 45 H 0.08 0.90 4.21 -51.93 -0.22 0.68 16 46 H 0.08 1.04 6.73 -51.93 -0.35 0.69 16 47 H 0.09 1.48 4.99 -51.92 -0.26 1.22 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -29.81 365.77 -8.91 -38.71 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.50 Total: 1.05 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -2.47 Total: -0.57 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.55 Total: -51.44 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.81 -8.91 -38.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957532807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.620 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds