Wall clock time and date at job start Wed Apr 1 2020 04:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00092 * 2 1 4 4 H 1.48503 * 109.47071 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46981 * 300.00087 * 3 2 1 6 6 H 1.48497 * 109.46786 * 60.00003 * 3 2 1 7 7 C 1.38810 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00045 * 169.47779 * 7 2 1 9 9 N 1.36935 * 120.00080 * 349.46966 * 7 2 1 10 10 C 1.46926 * 120.64291 * 328.89491 * 9 7 2 11 11 C 1.53184 * 108.78355 * 233.64393 * 10 9 7 12 12 C 1.53033 * 109.33740 * 305.38229 * 11 10 9 13 13 C 1.53050 * 109.54731 * 61.30172 * 12 11 10 14 14 C 1.46935 * 120.64161 * 148.90688 * 9 7 2 15 15 C 1.53038 * 109.44079 * 181.24135 * 12 11 10 16 16 C 1.53193 * 109.32945 * 58.68815 * 15 12 11 17 17 N 1.46924 * 108.77009 * 54.64830 * 16 15 12 18 18 C 1.34777 * 120.64633 * 126.33508 * 17 16 15 19 19 O 1.21549 * 119.99427 * 4.01105 * 18 17 16 20 20 C 1.47841 * 120.00019 * 184.01611 * 18 17 16 21 21 C 1.39559 * 120.54841 * 134.76638 * 20 18 17 22 22 N 1.31650 * 120.62906 * 179.97438 * 21 20 18 23 23 C 1.31950 * 121.90435 * 0.02562 * 22 21 20 24 24 C 1.38534 * 121.04025 * 359.71525 * 23 22 21 25 25 F 1.35105 * 120.37139 * 180.29311 * 24 23 22 26 26 C 1.38614 * 119.25760 * 0.53958 * 24 23 22 27 27 C 1.46931 * 118.71514 * 306.60031 * 17 16 15 28 28 C 1.52759 * 109.01179 * 53.34115 * 27 17 16 29 29 H 0.97003 * 119.99851 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.58622 * 113.84907 * 10 9 7 31 31 H 1.09001 * 109.69760 * 353.49967 * 10 9 7 32 32 H 1.09000 * 109.49603 * 185.42334 * 11 10 9 33 33 H 1.09007 * 109.49387 * 65.33564 * 11 10 9 34 34 H 1.08991 * 109.49484 * 58.63501 * 13 12 11 35 35 H 1.08998 * 109.49389 * 178.72994 * 13 12 11 36 36 H 1.08998 * 109.58966 * 246.13378 * 14 9 7 37 37 H 1.09006 * 109.58078 * 6.41249 * 14 9 7 38 38 H 1.08999 * 109.49642 * 298.73343 * 15 12 11 39 39 H 1.08996 * 109.49680 * 178.64228 * 15 12 11 40 40 H 1.08996 * 109.58418 * 294.85871 * 16 15 12 41 41 H 1.08998 * 109.70324 * 174.50272 * 16 15 12 42 42 H 1.08007 * 119.68314 * 0.02562 * 21 20 18 43 43 H 1.08001 * 119.47553 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.86889 * 179.75218 * 26 24 23 45 45 H 1.09000 * 109.58671 * 173.17810 * 27 17 16 46 46 H 1.08999 * 109.58938 * 293.60023 * 27 17 16 47 47 H 1.09007 * 109.56020 * 185.56189 * 28 27 17 48 48 H 1.08994 * 109.35786 * 65.51835 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0766 -1.2099 -0.1713 9 7 1.3429 -2.3781 0.2157 10 6 0.1518 -2.4162 1.0751 11 6 0.3542 -3.4872 2.1514 12 6 0.6888 -4.8219 1.4816 13 6 1.9888 -4.6838 0.6858 14 6 1.8042 -3.6264 -0.4072 15 6 0.8611 -5.9006 2.5534 16 6 -0.4302 -6.0151 3.3698 17 7 -1.5513 -6.2523 2.4503 18 6 -2.3780 -7.3013 2.6310 19 8 -2.2445 -8.0199 3.6022 20 6 -3.4470 -7.5780 1.6480 21 6 -3.6714 -8.8773 1.1909 22 7 -4.6233 -9.1256 0.3160 23 6 -5.3974 -8.1700 -0.1623 24 6 -5.2429 -6.8548 0.2446 25 9 -6.0470 -5.8880 -0.2494 26 6 -4.2508 -6.5411 1.1604 27 6 -1.7504 -5.3271 1.3263 28 6 -0.4478 -5.2166 0.5360 29 1 -0.4850 0.8401 0.0004 30 1 -0.7241 -2.6623 0.4749 31 1 0.0092 -1.4448 1.5486 32 1 -0.5596 -3.5927 2.7361 33 1 1.1742 -3.1937 2.8070 34 1 2.7939 -4.3792 1.3543 35 1 2.2381 -5.6408 0.2276 36 1 1.0626 -3.9712 -1.1277 37 1 2.7532 -3.4526 -0.9144 38 1 1.6855 -5.6297 3.2130 39 1 1.0756 -6.8567 2.0761 40 1 -0.5981 -5.0892 3.9197 41 1 -0.3497 -6.8466 4.0700 42 1 -3.0588 -9.6871 1.5591 43 1 -6.1668 -8.4179 -0.8785 44 1 -4.1048 -5.5239 1.4925 45 1 -2.5394 -5.7058 0.6766 46 1 -2.0280 -4.3441 1.7069 47 1 -0.5550 -4.4587 -0.2401 48 1 -0.2212 -6.1787 0.0767 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957532807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:56 Heat of formation + Delta-G solvation = -29.438566 kcal Electronic energy + Delta-G solvation = -31759.512772 eV Core-core repulsion = 27535.929135 eV Total energy + Delta-G solvation = -4223.583637 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.09341 -42.18490 -40.97305 -39.74946 -37.41818 -35.36317 -34.15613 -32.87431 -32.21417 -31.92957 -31.50714 -29.57942 -27.07268 -25.88865 -25.15124 -24.59524 -24.10075 -23.51145 -22.21226 -20.95442 -19.52158 -19.00915 -18.44828 -18.22599 -18.10851 -17.47293 -16.97695 -16.85522 -16.81731 -16.28628 -15.78395 -15.57226 -15.33123 -15.12841 -15.01484 -14.85086 -14.84047 -14.53831 -14.45575 -14.37789 -14.00973 -13.50104 -13.34488 -13.22168 -12.93120 -12.86025 -12.82590 -12.56795 -12.23129 -12.19270 -12.00320 -11.78717 -11.71500 -11.53837 -11.28347 -11.05969 -10.95517 -10.90936 -10.60943 -10.47977 -10.18419 -9.69460 -8.54364 -7.83569 -5.32771 -0.55881 -0.22197 1.42753 1.45287 1.47873 1.56994 1.78567 2.41438 2.51686 2.78795 3.14685 3.31200 3.32207 3.52471 3.56705 3.71043 3.78751 3.80951 3.83152 3.97294 4.11622 4.19689 4.35043 4.36228 4.44841 4.58100 4.59893 4.62131 4.65792 4.71027 4.73218 4.78941 4.84760 4.86942 5.03840 5.05181 5.09278 5.15735 5.30694 5.36097 5.37539 5.42461 5.47424 5.57025 5.60322 5.69943 5.91144 6.19647 6.45470 6.55927 6.88699 7.21195 7.92634 8.43287 9.20877 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014154 B = 0.003057 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.787959 B = 9157.770986 C =10316.539780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.046 4.046 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.259 4.259 8 H 0.059 0.941 9 N -0.610 5.610 10 C 0.181 3.819 11 C -0.120 4.120 12 C -0.043 4.043 13 C -0.111 4.111 14 C 0.141 3.859 15 C -0.112 4.112 16 C 0.112 3.888 17 N -0.590 5.590 18 C 0.568 3.432 19 O -0.563 6.563 20 C -0.157 4.157 21 C 0.141 3.859 22 N -0.469 5.469 23 C 0.102 3.898 24 C 0.043 3.957 25 F -0.126 7.126 26 C -0.081 4.081 27 C 0.097 3.903 28 C -0.119 4.119 29 H 0.248 0.752 30 H 0.006 0.994 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.019 0.981 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.180 0.820 43 H 0.202 0.798 44 H 0.165 0.835 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.638 -16.785 2.457 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.242 4.242 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.390 4.390 8 H 0.077 0.923 9 N -0.333 5.333 10 C 0.056 3.944 11 C -0.159 4.159 12 C -0.043 4.043 13 C -0.150 4.150 14 C 0.016 3.984 15 C -0.150 4.150 16 C -0.010 4.010 17 N -0.321 5.321 18 C 0.355 3.645 19 O -0.443 6.443 20 C -0.162 4.162 21 C -0.016 4.016 22 N -0.176 5.176 23 C -0.056 4.056 24 C 0.022 3.978 25 F -0.105 7.105 26 C -0.108 4.108 27 C -0.025 4.025 28 C -0.157 4.157 29 H 0.058 0.942 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.037 0.963 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.197 0.803 43 H 0.218 0.782 44 H 0.182 0.818 45 H 0.117 0.883 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.784 -17.833 2.658 19.639 hybrid contribution 0.393 2.601 0.020 2.631 sum -7.391 -15.233 2.678 17.141 Atomic orbital electron populations 1.70118 1.06357 1.25472 1.55872 1.25787 0.96147 1.01079 1.01158 0.85289 0.78586 0.80354 0.76724 1.19391 1.21974 1.21793 1.19488 0.91017 0.85414 1.43076 0.92284 1.44247 1.31676 1.03870 1.53550 1.20570 0.87305 0.96449 0.90074 1.22140 1.00340 0.95322 0.98057 1.20338 0.94865 0.94144 0.94944 1.21912 0.96653 0.98553 0.97883 1.21062 0.96911 0.86614 0.93807 1.21908 0.96914 0.98684 0.97512 1.21743 0.84791 1.02580 0.91850 1.48080 1.28928 1.26308 1.28828 1.18134 0.81412 0.80133 0.84782 1.90786 1.72860 1.49547 1.31152 1.20742 0.99116 0.95638 1.00700 1.23138 0.93314 0.94516 0.90658 1.67919 1.04732 1.34847 1.10107 1.23616 0.97923 0.86318 0.97773 1.18681 0.92835 0.87767 0.98553 1.91577 1.71044 1.61890 1.85983 1.22083 0.92898 1.01236 0.94540 1.22174 0.99035 0.93394 0.87874 1.21854 0.94024 1.01747 0.98048 0.94247 0.97595 0.93607 0.91590 0.93630 0.92916 0.90637 0.96296 0.93811 0.89842 0.91012 0.90547 0.89121 0.80261 0.78158 0.81764 0.88263 0.90439 0.91357 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.30 11.02 21.65 0.24 -53.06 16 2 C -0.05 -2.52 5.06 84.86 0.43 -2.09 16 3 Si 0.96 44.18 29.57 68.60 2.03 46.21 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 7 C -0.26 -13.92 9.59 84.03 0.81 -13.11 16 8 H 0.06 3.14 7.85 -2.91 -0.02 3.12 16 9 N -0.61 -29.00 2.99 -699.10 -2.09 -31.09 16 10 C 0.18 8.04 4.79 86.36 0.41 8.45 16 11 C -0.12 -3.96 4.14 30.67 0.13 -3.84 16 12 C -0.04 -1.16 0.51 -52.13 -0.03 -1.18 16 13 C -0.11 -3.32 4.90 30.67 0.15 -3.17 16 14 C 0.14 5.46 6.05 86.36 0.52 5.98 16 15 C -0.11 -2.46 4.90 30.67 0.15 -2.31 16 16 C 0.11 2.47 5.96 86.36 0.51 2.98 16 17 N -0.59 -13.26 2.98 -823.15 -2.45 -15.71 16 18 C 0.57 13.58 7.32 86.79 0.64 14.21 16 19 O -0.56 -16.72 16.43 -3.87 -0.06 -16.79 16 20 C -0.16 -3.14 5.20 -20.00 -0.10 -3.24 16 21 C 0.14 2.65 10.86 85.04 0.92 3.57 16 22 N -0.47 -8.52 10.34 -194.59 -2.01 -10.54 16 23 C 0.10 1.53 11.16 84.75 0.95 2.48 16 24 C 0.04 0.73 7.33 22.43 0.16 0.90 16 25 F -0.13 -2.32 17.28 44.97 0.78 -1.54 16 26 C -0.08 -1.46 7.44 22.78 0.17 -1.29 16 27 C 0.10 2.16 4.74 86.22 0.41 2.57 16 28 C -0.12 -3.04 4.13 30.53 0.13 -2.91 16 29 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 30 H 0.01 0.28 6.72 -2.39 -0.02 0.26 16 31 H 0.05 2.40 6.08 -2.39 -0.01 2.38 16 32 H 0.07 1.95 5.00 -2.39 -0.01 1.94 16 33 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.02 0.74 6.66 -2.39 -0.02 0.72 16 37 H 0.04 1.72 7.93 -2.38 -0.02 1.70 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 1.68 6.66 -2.39 -0.02 1.66 16 41 H 0.09 2.05 7.03 -2.39 -0.02 2.03 16 42 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 43 H 0.20 1.74 8.06 -2.91 -0.02 1.71 16 44 H 0.16 2.72 6.62 -2.91 -0.02 2.70 16 45 H 0.10 1.94 4.21 -2.39 -0.01 1.93 16 46 H 0.08 1.85 6.73 -2.39 -0.02 1.83 16 47 H 0.07 2.13 4.99 -2.38 -0.01 2.12 16 48 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -64.86 365.77 3.78 -61.08 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.00 Total: 13.43 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 6.36 Total: 8.00 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -6.31 Total: -110.40 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.06 Total: -16.79 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.86 3.78 -61.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957532807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.642 kcal (2) G-P(sol) polarization free energy of solvation -64.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds