Wall clock time and date at job start Wed Apr 1 2020 04:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00113 * 2 1 4 4 H 1.48498 * 109.46957 * 270.00438 * 3 2 1 5 5 H 1.48503 * 109.46833 * 30.00316 * 3 2 1 6 6 H 1.48495 * 109.46999 * 149.99861 * 3 2 1 7 7 C 1.38808 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00287 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99821 * 0.27366 * 7 2 1 10 10 C 1.47016 * 125.65050 * 359.41453 * 9 7 2 11 11 C 1.54336 * 107.26862 * 178.85067 * 10 9 7 12 12 C 1.55156 * 103.01932 * 338.14499 * 11 10 9 13 13 H 1.09010 * 111.00227 * 277.23019 * 12 11 10 14 14 C 1.52999 * 111.03997 * 153.39483 * 12 11 10 15 15 H 1.09000 * 109.49780 * 306.26628 * 14 12 11 16 16 C 1.53036 * 109.49803 * 186.16917 * 14 12 11 17 17 C 1.53042 * 109.53786 * 178.68715 * 16 14 12 18 18 C 1.53191 * 109.31511 * 61.35944 * 17 16 14 19 19 N 1.46918 * 108.77723 * 305.36740 * 18 17 16 20 20 C 1.34780 * 120.63491 * 233.63142 * 19 18 17 21 21 O 1.21558 * 120.00492 * 174.06687 * 20 19 18 22 22 C 1.47731 * 119.99758 * 354.06268 * 20 19 18 23 23 C 1.40152 * 120.52933 * 138.60773 * 22 20 19 24 24 C 1.38154 * 118.31999 * 179.75827 * 23 22 20 25 25 C 1.38755 * 119.28540 * 0.49690 * 24 23 22 26 26 F 1.35104 * 119.49125 * 179.74531 * 25 24 23 27 27 N 1.32144 * 121.01336 * 359.76496 * 25 24 23 28 28 C 1.31692 * 121.84505 * 359.97438 * 27 25 24 29 29 C 1.46932 * 118.73951 * 53.60735 * 19 18 17 30 30 C 1.47431 * 125.64648 * 179.72742 * 9 7 2 31 31 H 0.97000 * 120.00082 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.88613 * 298.39604 * 10 9 7 33 33 H 1.09001 * 109.88105 * 59.56091 * 10 9 7 34 34 H 1.09001 * 110.85347 * 219.67301 * 11 10 9 35 35 H 1.08997 * 110.67051 * 96.52364 * 11 10 9 36 36 H 1.09010 * 109.45893 * 298.70093 * 16 14 12 37 37 H 1.08995 * 109.46615 * 58.66095 * 16 14 12 38 38 H 1.09007 * 109.49202 * 301.40965 * 17 16 14 39 39 H 1.08996 * 109.52587 * 181.33371 * 17 16 14 40 40 H 1.09009 * 109.58281 * 185.58183 * 18 17 16 41 41 H 1.08998 * 109.70335 * 65.22972 * 18 17 16 42 42 H 1.08000 * 120.84167 * 359.97438 * 23 22 20 43 43 H 1.08001 * 120.35847 * 180.24066 * 24 23 22 44 44 H 1.08002 * 119.70343 * 180.02562 * 28 27 25 45 45 H 1.08994 * 109.58630 * 186.60275 * 29 19 18 46 46 H 1.09001 * 109.58039 * 66.17997 * 29 19 18 47 47 H 1.09000 * 110.36421 * 322.92599 * 30 9 7 48 48 H 1.08996 * 110.36618 * 85.14206 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0067 10 6 -0.1375 -2.5328 -0.0010 11 6 -0.4485 -4.0439 -0.0411 12 6 0.8515 -4.6529 -0.6298 13 1 0.8558 -4.5873 -1.7179 14 6 1.0374 -6.1002 -0.1698 15 1 0.9877 -6.1454 0.9181 16 6 2.3992 -6.6151 -0.6414 17 6 2.6000 -8.0518 -0.1538 18 6 1.5107 -8.9470 -0.7528 19 7 0.1969 -8.3767 -0.4253 20 6 -0.7459 -9.1265 0.1794 21 8 -1.7878 -8.6164 0.5424 22 6 -0.5130 -10.5684 0.4009 23 6 -0.8879 -11.1729 1.6085 24 6 -0.6534 -12.5254 1.7649 25 6 -0.0503 -13.2333 0.7351 26 9 0.1857 -14.5550 0.8857 27 7 0.2972 -12.6344 -0.3904 28 6 0.0889 -11.3489 -0.5865 29 6 -0.0696 -6.9733 -0.7689 30 6 1.9334 -3.7311 -0.0137 31 1 -0.4850 0.8400 0.0004 32 1 -0.5501 -2.0914 0.9061 33 1 -0.5616 -2.0455 -0.8789 34 1 -1.2990 -4.2479 -0.6916 35 1 -0.6328 -4.4256 0.9631 36 1 2.4387 -6.5924 -1.7305 37 1 3.1876 -5.9807 -0.2364 38 1 2.5359 -8.0791 0.9340 39 1 3.5798 -8.4101 -0.4696 40 1 1.5892 -9.9494 -0.3317 41 1 1.6286 -8.9951 -1.8353 42 1 -1.3517 -10.5968 2.3955 43 1 -0.9328 -13.0255 2.6805 44 1 0.3864 -10.8949 -1.5202 45 1 -1.0338 -6.6734 -0.3587 46 1 -0.0796 -6.8581 -1.8528 47 1 2.8326 -3.7373 -0.6298 48 1 2.1687 -4.0463 1.0028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961112957.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:57 Heat of formation + Delta-G solvation = -12.992217 kcal Electronic energy + Delta-G solvation = -30405.759906 eV Core-core repulsion = 26182.889436 eV Total energy + Delta-G solvation = -4222.870470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.56691 -41.30492 -39.77943 -38.28574 -36.79307 -33.90333 -33.32880 -32.43499 -31.87637 -30.88472 -28.94252 -27.34046 -26.10788 -24.82368 -24.55670 -23.89319 -22.86746 -21.32879 -19.85402 -19.71137 -19.52460 -18.61508 -18.24002 -17.45660 -16.78968 -16.67407 -16.28356 -15.62707 -15.27874 -14.97809 -14.75307 -14.51718 -14.45858 -14.17832 -13.92394 -13.75416 -13.72887 -13.61248 -13.30011 -13.15587 -13.01332 -12.32008 -12.18337 -11.99185 -11.79257 -11.30181 -11.09591 -11.05327 -10.87157 -10.81640 -10.71013 -10.63141 -10.59932 -10.10223 -10.08661 -9.95858 -9.78806 -9.68672 -9.59972 -9.51759 -8.84551 -8.56990 -6.79010 -5.68034 -3.01391 0.00541 0.46707 2.27323 2.58141 2.91160 3.05496 3.40995 3.45729 3.47964 3.81472 3.97393 4.14815 4.27685 4.46420 4.52180 4.67320 4.72584 4.76459 4.89908 4.95321 5.06133 5.14899 5.23872 5.31108 5.39292 5.48696 5.52062 5.53592 5.62327 5.69492 5.73686 5.88369 5.90202 5.94804 5.98475 6.03838 6.20932 6.26693 6.37911 6.44285 6.59549 6.62353 6.77064 6.92197 7.00081 7.06047 7.59889 7.69123 7.78700 7.87005 8.30123 9.25635 9.86362 10.53040 11.43543 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.031335 B = 0.001994 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.361460 B =14039.212885 C =14511.207170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.140 4.140 12 C -0.095 4.095 13 H 0.074 0.926 14 C -0.086 4.086 15 H 0.074 0.926 16 C -0.117 4.117 17 C -0.134 4.134 18 C 0.096 3.904 19 N -0.602 5.602 20 C 0.564 3.436 21 O -0.525 6.525 22 C -0.190 4.190 23 C 0.005 3.995 24 C -0.196 4.196 25 C 0.324 3.676 26 F -0.107 7.107 27 N -0.515 5.515 28 C 0.169 3.831 29 C 0.117 3.883 30 C 0.145 3.855 31 H 0.252 0.748 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.176 0.824 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.036 0.964 48 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 -26.790 0.094 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.179 4.179 12 C -0.115 4.115 13 H 0.093 0.907 14 C -0.106 4.106 15 H 0.092 0.908 16 C -0.154 4.154 17 C -0.172 4.172 18 C -0.027 4.027 19 N -0.334 5.334 20 C 0.351 3.649 21 O -0.402 6.402 22 C -0.195 4.195 23 C -0.021 4.021 24 C -0.217 4.217 25 C 0.171 3.829 26 F -0.086 7.086 27 N -0.229 5.229 28 C 0.011 3.989 29 C -0.004 4.004 30 C 0.019 3.981 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.174 0.826 43 H 0.175 0.825 44 H 0.193 0.807 45 H 0.116 0.884 46 H 0.090 0.910 47 H 0.054 0.946 48 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.092 -26.825 -0.341 26.849 hybrid contribution 0.199 1.049 0.648 1.249 sum 1.291 -25.776 0.307 25.810 Atomic orbital electron populations 1.69977 1.04854 1.24934 1.57171 1.24812 0.95726 0.97659 1.02439 0.86129 0.78563 0.83607 0.77527 1.21649 1.21713 1.20748 1.19048 0.90378 0.82510 1.43602 0.90551 1.44498 1.01798 0.99931 1.87109 1.21126 0.84269 0.88459 1.00874 1.22934 0.96035 0.99430 0.99470 1.22308 0.97642 0.91587 0.99937 0.90714 1.21468 0.93866 0.94493 1.00772 0.90751 1.21617 0.97738 0.94960 1.01129 1.21925 0.97945 0.96057 1.01287 1.22104 0.82319 0.97525 1.00704 1.48066 1.13676 1.12664 1.58997 1.17916 0.83860 0.85194 0.77949 1.90839 1.26372 1.72951 1.50024 1.21054 1.05017 0.95986 0.97462 1.21598 0.91295 0.93243 0.95973 1.21843 1.03799 0.95169 1.00870 1.18399 0.94271 0.79473 0.90738 1.91660 1.91756 1.30165 1.95052 1.67056 1.21124 1.12423 1.22261 1.22893 0.90685 0.86802 0.98485 1.21831 1.00644 0.77964 1.00001 1.21512 0.94123 0.86010 0.96470 0.93810 0.94229 0.93675 0.92346 0.92606 0.91606 0.90786 0.91447 0.90525 0.89895 0.90551 0.82569 0.82549 0.80731 0.88398 0.90997 0.94600 0.96685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.40 10.31 55.49 0.57 -26.83 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -15.54 3.39 -170.07 -0.58 -16.11 16 10 C 0.18 4.35 5.38 -3.06 -0.02 4.33 16 11 C -0.14 -2.59 5.70 -24.89 -0.14 -2.73 16 12 C -0.09 -1.53 2.56 -88.47 -0.23 -1.76 16 13 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 14 C -0.09 -1.07 1.85 -90.50 -0.17 -1.24 16 15 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 16 C -0.12 -1.19 4.99 -26.69 -0.13 -1.32 16 17 C -0.13 -1.05 6.08 -26.61 -0.16 -1.21 16 18 C 0.10 0.68 4.93 -3.72 -0.02 0.66 16 19 N -0.60 -5.96 2.97 -173.93 -0.52 -6.47 16 20 C 0.56 6.31 7.32 -12.38 -0.09 6.22 16 21 O -0.53 -7.87 16.38 5.31 0.09 -7.78 16 22 C -0.19 -1.64 5.10 -104.82 -0.53 -2.18 16 23 C 0.00 0.04 9.81 -38.89 -0.38 -0.35 16 24 C -0.20 -1.24 10.07 -39.42 -0.40 -1.64 16 25 C 0.32 2.70 8.41 -17.23 -0.14 2.55 16 26 F -0.11 -0.93 17.29 2.25 0.04 -0.89 16 27 N -0.51 -4.68 10.36 -13.21 -0.14 -4.81 16 28 C 0.17 1.30 8.58 -17.14 -0.15 1.16 16 29 C 0.12 1.35 5.49 -3.71 -0.02 1.33 16 30 C 0.15 2.90 5.66 -2.53 -0.01 2.88 16 31 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.04 1.08 7.53 -51.93 -0.39 0.69 16 33 H 0.05 1.22 7.36 -51.93 -0.38 0.84 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.01 8.01 -51.93 -0.42 0.59 16 36 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.07 0.83 7.21 -51.93 -0.37 0.45 16 38 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.51 4.80 -51.92 -0.25 0.26 16 41 H 0.08 0.43 8.13 -51.93 -0.42 0.00 16 42 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.16 0.58 8.06 -52.49 -0.42 0.15 16 44 H 0.18 0.98 6.69 -52.49 -0.35 0.63 16 45 H 0.10 1.33 6.56 -51.93 -0.34 0.99 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.04 0.69 8.02 -51.93 -0.42 0.28 16 48 H 0.02 0.31 8.04 -51.93 -0.42 -0.11 16 LS Contribution 380.82 15.07 5.74 5.74 Total: -1.00 -33.41 380.82 -9.77 -43.18 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -7.11 Total: -3.02 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -2.85 Total: -0.21 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.66 Total: -54.23 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.04 Total: -0.89 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.41 -9.77 -43.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961112957.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.188 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds