Wall clock time and date at job start Wed Apr 1 2020 04:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00113 * 2 1 4 4 H 1.48498 * 109.46957 * 270.00438 * 3 2 1 5 5 H 1.48503 * 109.46833 * 30.00316 * 3 2 1 6 6 H 1.48495 * 109.46999 * 149.99861 * 3 2 1 7 7 C 1.38808 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00287 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99821 * 0.27366 * 7 2 1 10 10 C 1.47016 * 125.65050 * 359.41453 * 9 7 2 11 11 C 1.54336 * 107.26862 * 178.85067 * 10 9 7 12 12 C 1.55156 * 103.01932 * 338.14499 * 11 10 9 13 13 H 1.09010 * 111.00227 * 277.23019 * 12 11 10 14 14 C 1.52999 * 111.03997 * 153.39483 * 12 11 10 15 15 H 1.09000 * 109.49780 * 306.26628 * 14 12 11 16 16 C 1.53036 * 109.49803 * 186.16917 * 14 12 11 17 17 C 1.53042 * 109.53786 * 178.68715 * 16 14 12 18 18 C 1.53191 * 109.31511 * 61.35944 * 17 16 14 19 19 N 1.46918 * 108.77723 * 305.36740 * 18 17 16 20 20 C 1.34780 * 120.63491 * 233.63142 * 19 18 17 21 21 O 1.21558 * 120.00492 * 174.06687 * 20 19 18 22 22 C 1.47731 * 119.99758 * 354.06268 * 20 19 18 23 23 C 1.40152 * 120.52933 * 138.60773 * 22 20 19 24 24 C 1.38154 * 118.31999 * 179.75827 * 23 22 20 25 25 C 1.38755 * 119.28540 * 0.49690 * 24 23 22 26 26 F 1.35104 * 119.49125 * 179.74531 * 25 24 23 27 27 N 1.32144 * 121.01336 * 359.76496 * 25 24 23 28 28 C 1.31692 * 121.84505 * 359.97438 * 27 25 24 29 29 C 1.46932 * 118.73951 * 53.60735 * 19 18 17 30 30 C 1.47431 * 125.64648 * 179.72742 * 9 7 2 31 31 H 0.97000 * 120.00082 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.88613 * 298.39604 * 10 9 7 33 33 H 1.09001 * 109.88105 * 59.56091 * 10 9 7 34 34 H 1.09001 * 110.85347 * 219.67301 * 11 10 9 35 35 H 1.08997 * 110.67051 * 96.52364 * 11 10 9 36 36 H 1.09010 * 109.45893 * 298.70093 * 16 14 12 37 37 H 1.08995 * 109.46615 * 58.66095 * 16 14 12 38 38 H 1.09007 * 109.49202 * 301.40965 * 17 16 14 39 39 H 1.08996 * 109.52587 * 181.33371 * 17 16 14 40 40 H 1.09009 * 109.58281 * 185.58183 * 18 17 16 41 41 H 1.08998 * 109.70335 * 65.22972 * 18 17 16 42 42 H 1.08000 * 120.84167 * 359.97438 * 23 22 20 43 43 H 1.08001 * 120.35847 * 180.24066 * 24 23 22 44 44 H 1.08002 * 119.70343 * 180.02562 * 28 27 25 45 45 H 1.08994 * 109.58630 * 186.60275 * 29 19 18 46 46 H 1.09001 * 109.58039 * 66.17997 * 29 19 18 47 47 H 1.09000 * 110.36421 * 322.92599 * 30 9 7 48 48 H 1.08996 * 110.36618 * 85.14206 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0067 10 6 -0.1375 -2.5328 -0.0010 11 6 -0.4485 -4.0439 -0.0411 12 6 0.8515 -4.6529 -0.6298 13 1 0.8558 -4.5873 -1.7179 14 6 1.0374 -6.1002 -0.1698 15 1 0.9877 -6.1454 0.9181 16 6 2.3992 -6.6151 -0.6414 17 6 2.6000 -8.0518 -0.1538 18 6 1.5107 -8.9470 -0.7528 19 7 0.1969 -8.3767 -0.4253 20 6 -0.7459 -9.1265 0.1794 21 8 -1.7878 -8.6164 0.5424 22 6 -0.5130 -10.5684 0.4009 23 6 -0.8879 -11.1729 1.6085 24 6 -0.6534 -12.5254 1.7649 25 6 -0.0503 -13.2333 0.7351 26 9 0.1857 -14.5550 0.8857 27 7 0.2972 -12.6344 -0.3904 28 6 0.0889 -11.3489 -0.5865 29 6 -0.0696 -6.9733 -0.7689 30 6 1.9334 -3.7311 -0.0137 31 1 -0.4850 0.8400 0.0004 32 1 -0.5501 -2.0914 0.9061 33 1 -0.5616 -2.0455 -0.8789 34 1 -1.2990 -4.2479 -0.6916 35 1 -0.6328 -4.4256 0.9631 36 1 2.4387 -6.5924 -1.7305 37 1 3.1876 -5.9807 -0.2364 38 1 2.5359 -8.0791 0.9340 39 1 3.5798 -8.4101 -0.4696 40 1 1.5892 -9.9494 -0.3317 41 1 1.6286 -8.9951 -1.8353 42 1 -1.3517 -10.5968 2.3955 43 1 -0.9328 -13.0255 2.6805 44 1 0.3864 -10.8949 -1.5202 45 1 -1.0338 -6.6734 -0.3587 46 1 -0.0796 -6.8581 -1.8528 47 1 2.8326 -3.7373 -0.6298 48 1 2.1687 -4.0463 1.0028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961112957.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:56 Heat of formation + Delta-G solvation = -33.310286 kcal Electronic energy + Delta-G solvation = -30406.640963 eV Core-core repulsion = 26182.889436 eV Total energy + Delta-G solvation = -4223.751527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -50.18150 -42.01790 -40.58767 -39.51693 -38.03700 -35.28525 -33.94508 -33.77030 -32.71509 -32.05163 -30.63401 -28.81969 -26.92691 -26.48883 -25.15355 -24.84445 -23.82968 -22.40778 -21.62295 -20.86335 -20.47719 -19.20768 -18.97769 -18.77905 -18.09391 -17.35460 -17.08110 -16.91565 -16.50444 -15.97074 -15.83480 -15.58894 -15.53191 -15.29960 -14.96980 -14.70657 -14.33457 -14.28305 -14.20606 -13.99977 -13.96940 -13.88157 -13.73491 -13.54061 -13.21675 -12.81483 -12.74554 -12.27100 -12.12749 -12.08280 -11.99056 -11.75599 -11.70838 -11.53295 -11.37258 -11.24265 -11.17058 -11.00397 -10.76569 -10.70580 -10.14592 -9.67271 -8.88554 -7.84169 -5.19906 -0.60838 -0.07576 1.44890 1.47401 1.48965 1.55981 1.82199 2.33674 2.43862 2.50004 3.21030 3.33637 3.37588 3.58074 3.60719 3.73562 3.77126 3.85817 3.91086 4.07005 4.15248 4.16974 4.25000 4.38675 4.43788 4.48119 4.55832 4.61100 4.69795 4.73805 4.78610 4.81558 4.85826 4.91410 4.95269 4.98284 5.08487 5.17310 5.19417 5.34325 5.37418 5.42977 5.46417 5.50389 5.58285 5.68449 5.78783 6.20995 6.27350 6.35009 6.96952 7.10884 7.79619 8.44673 9.26392 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.031335 B = 0.001994 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.361460 B =14039.212885 C =14511.207170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.073 4.073 3 Si 0.980 3.020 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.240 4.240 8 H 0.084 0.916 9 N -0.631 5.631 10 C 0.185 3.815 11 C -0.127 4.127 12 C -0.075 4.075 13 H 0.082 0.918 14 C -0.074 4.074 15 H 0.059 0.941 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.093 3.907 19 N -0.597 5.597 20 C 0.564 3.436 21 O -0.572 6.572 22 C -0.198 4.198 23 C 0.002 3.998 24 C -0.181 4.181 25 C 0.313 3.687 26 F -0.112 7.112 27 N -0.533 5.533 28 C 0.177 3.823 29 C 0.121 3.879 30 C 0.141 3.859 31 H 0.245 0.755 32 H -0.003 1.003 33 H 0.010 0.990 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.163 0.837 43 H 0.185 0.815 44 H 0.196 0.804 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.046 0.954 48 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.100 -29.167 -0.612 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.265 4.265 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.369 4.369 8 H 0.102 0.898 9 N -0.357 5.357 10 C 0.059 3.941 11 C -0.165 4.165 12 C -0.095 4.095 13 H 0.100 0.900 14 C -0.094 4.094 15 H 0.077 0.923 16 C -0.152 4.152 17 C -0.166 4.166 18 C -0.028 4.028 19 N -0.328 5.328 20 C 0.352 3.648 21 O -0.452 6.452 22 C -0.204 4.204 23 C -0.023 4.023 24 C -0.202 4.202 25 C 0.160 3.840 26 F -0.091 7.091 27 N -0.248 5.248 28 C 0.019 3.981 29 C -0.001 4.001 30 C 0.017 3.983 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.028 0.972 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.181 0.819 43 H 0.202 0.798 44 H 0.213 0.787 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.065 0.935 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 2.944 -29.255 -1.055 29.422 hybrid contribution -0.333 1.758 0.904 2.004 sum 2.611 -27.498 -0.151 27.622 Atomic orbital electron populations 1.70219 1.06408 1.25161 1.58542 1.25717 0.96651 1.01246 1.02891 0.85050 0.77612 0.78975 0.77542 1.21102 1.22318 1.19219 1.19490 0.91046 0.83792 1.42580 0.89799 1.44855 1.02447 1.01464 1.86915 1.20877 0.83965 0.92009 0.97203 1.22770 0.98122 0.95113 1.00486 1.22180 0.94286 0.93146 0.99909 0.89988 1.21299 0.96098 0.92136 0.99845 0.92276 1.21599 0.95385 0.96300 1.01955 1.21895 0.99501 0.94504 1.00722 1.22369 0.80259 0.97740 1.02430 1.48106 1.14622 1.11844 1.58247 1.18251 0.83276 0.86114 0.77128 1.90818 1.28302 1.74024 1.52088 1.20917 1.06334 0.94580 0.98528 1.21770 0.90977 0.93732 0.95869 1.22032 1.02347 0.94508 1.01277 1.18647 0.94703 0.79444 0.91192 1.91649 1.91844 1.30532 1.95089 1.67068 1.21906 1.12926 1.22887 1.23120 0.89971 0.86229 0.98804 1.21652 0.98913 0.78900 1.00685 1.21710 0.95462 0.84204 0.96968 0.94538 0.98437 0.97155 0.90535 0.92291 0.90206 0.91779 0.92445 0.88030 0.88516 0.87902 0.81915 0.79797 0.78692 0.90758 0.89289 0.93538 0.96575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 10.31 21.65 0.22 -58.89 16 2 C -0.07 -4.22 5.49 84.86 0.47 -3.76 16 3 Si 0.98 46.47 29.55 68.60 2.03 48.49 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.24 -13.67 10.28 84.03 0.86 -12.80 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 9 N -0.63 -32.99 3.39 -691.98 -2.35 -35.34 16 10 C 0.18 9.47 5.38 86.73 0.47 9.93 16 11 C -0.13 -4.73 5.70 31.79 0.18 -4.55 16 12 C -0.08 -2.36 2.56 -9.40 -0.02 -2.39 16 13 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 14 C -0.07 -1.72 1.85 -10.72 -0.02 -1.74 16 15 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 16 C -0.11 -2.00 4.99 30.62 0.15 -1.84 16 17 C -0.13 -1.56 6.08 30.67 0.19 -1.38 16 18 C 0.09 0.97 4.93 86.36 0.43 1.40 16 19 N -0.60 -10.49 2.97 -822.45 -2.44 -12.93 16 20 C 0.56 11.88 7.32 86.75 0.64 12.52 16 21 O -0.57 -17.11 16.38 -3.90 -0.06 -17.17 16 22 C -0.20 -3.06 5.10 -20.00 -0.10 -3.16 16 23 C 0.00 0.03 9.81 22.71 0.22 0.25 16 24 C -0.18 -1.88 10.07 22.37 0.23 -1.65 16 25 C 0.31 4.56 8.41 84.77 0.71 5.27 16 26 F -0.11 -1.75 17.29 44.97 0.78 -0.97 16 27 N -0.53 -8.51 10.36 -195.72 -2.03 -10.54 16 28 C 0.18 2.27 8.58 85.02 0.73 3.00 16 29 C 0.12 2.57 5.49 86.36 0.47 3.04 16 30 C 0.14 5.58 5.66 86.85 0.49 6.07 16 31 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.00 -0.15 7.53 -2.39 -0.02 -0.17 16 33 H 0.01 0.59 7.36 -2.39 -0.02 0.57 16 34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.06 2.16 8.01 -2.39 -0.02 2.14 16 36 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.06 1.27 7.21 -2.39 -0.02 1.25 16 38 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.10 0.81 4.80 -2.38 -0.01 0.80 16 41 H 0.10 0.63 8.13 -2.39 -0.02 0.61 16 42 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 43 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 44 H 0.20 1.52 6.69 -2.91 -0.02 1.51 16 45 H 0.07 1.98 6.56 -2.39 -0.02 1.97 16 46 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.05 1.74 8.02 -2.39 -0.02 1.72 16 48 H 0.02 0.65 8.04 -2.39 -0.02 0.63 16 Total: -1.00 -76.34 380.82 3.20 -73.14 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.97 Total: 5.99 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 6.09 Total: 8.22 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -6.60 Total: -117.70 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.06 Total: -17.17 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.78 Total: -0.97 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -76.34 3.20 -73.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961112957.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.827 kcal (2) G-P(sol) polarization free energy of solvation -76.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds