Wall clock time and date at job start Wed Apr 1 2020 04:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99972 * 2 1 4 4 H 1.48505 * 109.46948 * 239.99913 * 3 2 1 5 5 H 1.48498 * 109.47205 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47367 * 119.99861 * 3 2 1 7 7 C 1.38809 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99973 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99850 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64932 * 359.97438 * 9 7 2 11 11 C 1.54914 * 104.83182 * 155.90412 * 10 9 7 12 12 C 1.55158 * 101.58078 * 37.01210 * 11 10 9 13 13 H 1.08993 * 110.72098 * 83.03607 * 12 11 10 14 14 C 1.52994 * 110.71588 * 206.13411 * 12 11 10 15 15 H 1.08994 * 109.50178 * 59.93671 * 14 12 11 16 16 C 1.53045 * 109.49954 * 299.83504 * 14 12 11 17 17 C 1.53040 * 109.54047 * 178.68750 * 16 14 12 18 18 C 1.52761 * 109.38310 * 61.23921 * 17 16 14 19 19 N 1.46931 * 109.01001 * 305.59148 * 18 17 16 20 20 C 1.34781 * 120.62628 * 233.58754 * 19 18 17 21 21 O 1.21569 * 119.99273 * 183.50387 * 20 19 18 22 22 C 1.47721 * 120.00150 * 3.49863 * 20 19 18 23 23 C 1.40157 * 120.53060 * 309.80815 * 22 20 19 24 24 C 1.38154 * 118.32267 * 180.24176 * 23 22 20 25 25 C 1.38751 * 119.28147 * 359.51346 * 24 23 22 26 26 F 1.35099 * 119.49092 * 180.25445 * 25 24 23 27 27 N 1.32146 * 121.01996 * 0.23204 * 25 24 23 28 28 C 1.31692 * 121.84012 * 0.02562 * 27 25 24 29 29 C 1.46921 * 118.73841 * 53.30674 * 19 18 17 30 30 C 1.47022 * 125.64825 * 180.02562 * 9 7 2 31 31 H 0.97008 * 119.99754 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.36656 * 37.06761 * 10 9 7 33 33 H 1.08997 * 110.36712 * 274.74613 * 10 9 7 34 34 H 1.08997 * 111.00392 * 278.93804 * 11 10 9 35 35 H 1.08994 * 111.03194 * 155.09644 * 11 10 9 36 36 H 1.08999 * 109.45723 * 298.70790 * 16 14 12 37 37 H 1.08995 * 109.45679 * 58.68161 * 16 14 12 38 38 H 1.08990 * 109.49890 * 181.31771 * 17 16 14 39 39 H 1.09003 * 109.49228 * 301.38364 * 17 16 14 40 40 H 1.08997 * 109.50743 * 185.71134 * 18 17 16 41 41 H 1.08993 * 109.43329 * 65.42453 * 18 17 16 42 42 H 1.07998 * 120.83934 * 0.02562 * 23 22 20 43 43 H 1.07999 * 120.36035 * 179.78949 * 24 23 22 44 44 H 1.08003 * 119.70379 * 180.02562 * 28 27 25 45 45 H 1.09002 * 109.58477 * 66.43173 * 29 19 18 46 46 H 1.08997 * 109.58560 * 186.85969 * 29 19 18 47 47 H 1.09000 * 109.88046 * 61.61437 * 30 9 7 48 48 H 1.08994 * 109.88558 * 300.44246 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1415 -2.5331 0.0028 11 6 -0.4021 -3.9328 -0.6078 12 6 0.7784 -4.7524 -0.0228 13 1 0.5454 -5.0998 0.9837 14 6 1.1224 -5.9320 -0.9344 15 1 1.4049 -5.5605 -1.9193 16 6 -0.0954 -6.8498 -1.0638 17 6 0.2373 -8.0126 -2.0015 18 6 1.3928 -8.8219 -1.4155 19 7 2.5214 -7.9199 -1.1479 20 6 3.7452 -8.1848 -1.6468 21 8 4.6845 -7.4659 -1.3661 22 6 3.9450 -9.3485 -2.5345 23 6 3.4771 -10.6163 -2.1626 24 6 3.6932 -11.6737 -3.0251 25 6 4.3513 -11.4468 -4.2254 26 9 4.5602 -12.4768 -5.0743 27 7 4.7764 -10.2387 -4.5512 28 6 4.5976 -9.2022 -3.7588 29 6 2.2892 -6.7207 -0.3315 30 6 1.9318 -3.7274 0.0028 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5998 -1.7593 -0.6131 33 1 -0.5266 -2.4859 1.0214 34 1 -0.3532 -3.8996 -1.6961 35 1 -1.3591 -4.3334 -0.2737 36 1 -0.3620 -7.2401 -0.0817 37 1 -0.9343 -6.2847 -1.4700 38 1 -0.6378 -8.6529 -2.1117 39 1 0.5273 -7.6218 -2.9769 40 1 1.6984 -9.5883 -2.1276 41 1 1.0718 -9.2912 -0.4856 42 1 2.9638 -10.7636 -1.2239 43 1 3.3496 -12.6652 -2.7699 44 1 4.9590 -8.2299 -4.0598 45 1 2.0428 -7.0153 0.6886 46 1 3.1861 -6.1014 -0.3287 47 1 2.5286 -3.8633 0.9047 48 1 2.5578 -3.8518 -0.8807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961112964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:03 Heat of formation + Delta-G solvation = -11.635160 kcal Electronic energy + Delta-G solvation = -30533.173365 eV Core-core repulsion = 26310.361741 eV Total energy + Delta-G solvation = -4222.811623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.53973 -41.25915 -39.78812 -38.28440 -36.78244 -34.14567 -33.15162 -32.34842 -31.74604 -30.97824 -29.05410 -27.16755 -26.20908 -24.80601 -24.37911 -24.13651 -22.77560 -21.31422 -19.98273 -19.68931 -19.42422 -18.62568 -18.03740 -17.49891 -16.86358 -16.63443 -16.30675 -15.58064 -15.20459 -15.00124 -14.79714 -14.63869 -14.41480 -14.21770 -13.85900 -13.78448 -13.69231 -13.62910 -13.37667 -13.03108 -12.97555 -12.54981 -12.25765 -11.86348 -11.58470 -11.29032 -11.14928 -11.06343 -10.89348 -10.78981 -10.70245 -10.62089 -10.45380 -10.16958 -10.10156 -9.96471 -9.78027 -9.73232 -9.53934 -9.45232 -8.83255 -8.60771 -6.78333 -5.61395 -3.02498 0.08047 0.46000 2.27164 2.60173 2.98002 3.05056 3.43509 3.47353 3.48826 3.82090 4.00920 4.13266 4.29379 4.45101 4.53799 4.66170 4.68829 4.80833 4.89204 5.04721 5.05974 5.13960 5.14631 5.33134 5.35445 5.47746 5.49193 5.56496 5.61456 5.64523 5.75796 5.85001 5.90949 5.92694 5.99734 6.03859 6.21801 6.23150 6.39784 6.44036 6.62637 6.65394 6.80323 6.98258 7.01188 7.10022 7.55422 7.67484 7.81479 7.89419 8.40812 9.26843 9.87948 10.53134 11.42477 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.002227 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.256719 B =12570.052040 C =13413.226926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.136 4.136 12 C -0.092 4.092 13 H 0.071 0.929 14 C -0.087 4.087 15 H 0.076 0.924 16 C -0.115 4.115 17 C -0.136 4.136 18 C 0.097 3.903 19 N -0.600 5.600 20 C 0.564 3.436 21 O -0.522 6.522 22 C -0.186 4.186 23 C -0.019 4.019 24 C -0.197 4.197 25 C 0.324 3.676 26 F -0.108 7.108 27 N -0.512 5.512 28 C 0.190 3.810 29 C 0.116 3.884 30 C 0.140 3.860 31 H 0.251 0.749 32 H 0.105 0.895 33 H 0.010 0.990 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.178 0.822 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.019 0.981 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 -26.802 -4.541 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.174 4.174 12 C -0.112 4.112 13 H 0.089 0.911 14 C -0.107 4.107 15 H 0.094 0.906 16 C -0.152 4.152 17 C -0.174 4.174 18 C -0.026 4.026 19 N -0.333 5.333 20 C 0.350 3.650 21 O -0.398 6.398 22 C -0.191 4.191 23 C -0.045 4.045 24 C -0.218 4.218 25 C 0.170 3.830 26 F -0.087 7.087 27 N -0.226 5.226 28 C 0.032 3.968 29 C -0.006 4.006 30 C 0.014 3.986 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.028 0.972 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.172 0.828 43 H 0.174 0.826 44 H 0.195 0.805 45 H 0.089 0.911 46 H 0.117 0.883 47 H 0.037 0.963 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.115 -26.120 -5.199 26.656 hybrid contribution 0.033 0.403 0.643 0.759 sum 1.148 -25.717 -4.557 26.143 Atomic orbital electron populations 1.69794 1.04869 1.24756 1.57887 1.24775 0.95728 0.97677 1.02628 0.86159 0.78398 0.83082 0.77922 1.21175 1.21610 1.21236 1.19052 0.90501 0.82563 1.42749 0.90597 1.44505 1.01987 0.99794 1.86793 1.21923 0.84715 0.92690 0.98050 1.23023 0.95783 0.98729 0.99889 1.22139 0.97550 0.93517 0.97961 0.91103 1.21524 0.94059 0.94887 1.00206 0.90596 1.21592 0.98362 0.95808 0.99460 1.21860 0.97599 0.98007 0.99912 1.21975 0.86909 0.92634 1.01056 1.48074 1.08198 1.25491 1.51529 1.17932 0.83048 0.84117 0.79919 1.90867 1.40281 1.49427 1.59192 1.21037 1.04353 0.95361 0.98384 1.21697 0.93322 0.90408 0.99080 1.21783 1.03723 1.02038 0.94271 1.18419 0.94130 0.83814 0.86621 1.91657 1.92395 1.54408 1.70226 1.67121 1.21161 0.98747 1.35539 1.22687 0.89989 0.96672 0.87405 1.21861 1.00388 0.85103 0.93221 1.21340 0.93669 0.85899 0.97694 0.93781 0.87751 0.97233 0.92301 0.92578 0.91775 0.90876 0.90620 0.91417 0.89759 0.90802 0.82842 0.82634 0.80525 0.91112 0.88296 0.96330 0.95907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.19 10.09 55.49 0.56 -26.63 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.69 3.39 -170.07 -0.58 -16.27 16 10 C 0.15 3.65 5.89 -2.53 -0.01 3.64 16 11 C -0.14 -2.44 5.38 -24.58 -0.13 -2.57 16 12 C -0.09 -1.49 2.49 -88.79 -0.22 -1.71 16 13 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 14 C -0.09 -1.11 1.74 -90.50 -0.16 -1.26 16 15 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 16 C -0.11 -1.12 4.97 -26.69 -0.13 -1.25 16 17 C -0.14 -1.02 6.06 -26.83 -0.16 -1.19 16 18 C 0.10 0.66 5.37 -3.93 -0.02 0.64 16 19 N -0.60 -6.11 2.98 -174.19 -0.52 -6.63 16 20 C 0.56 6.57 7.26 -12.38 -0.09 6.48 16 21 O -0.52 -8.25 16.48 5.31 0.09 -8.16 16 22 C -0.19 -1.67 5.02 -104.83 -0.53 -2.20 16 23 C -0.02 -0.12 7.49 -38.89 -0.29 -0.41 16 24 C -0.20 -1.14 10.07 -39.42 -0.40 -1.54 16 25 C 0.32 2.81 8.41 -17.23 -0.14 2.66 16 26 F -0.11 -0.97 17.29 2.25 0.04 -0.93 16 27 N -0.51 -5.30 10.36 -13.22 -0.14 -5.44 16 28 C 0.19 1.83 10.90 -17.14 -0.19 1.64 16 29 C 0.12 1.40 5.47 -3.71 -0.02 1.38 16 30 C 0.14 2.92 6.10 -3.06 -0.02 2.90 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.10 2.85 5.87 -51.93 -0.31 2.55 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 1.06 8.05 -51.93 -0.42 0.65 16 35 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.76 7.20 -51.93 -0.37 0.39 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.45 4.54 -51.93 -0.24 0.22 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.15 0.55 7.11 -52.49 -0.37 0.18 16 43 H 0.16 0.44 8.06 -52.49 -0.42 0.02 16 44 H 0.18 1.57 8.06 -52.48 -0.42 1.15 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.10 1.46 6.57 -51.93 -0.34 1.11 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.02 0.49 7.77 -51.93 -0.40 0.08 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -33.56 380.47 -9.67 -43.23 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -7.06 Total: -2.64 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.77 Total: 0.33 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.67 Total: -54.96 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.04 Total: -0.93 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.56 -9.67 -43.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961112964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.593 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds