Wall clock time and date at job start Wed Apr 1 2020 04:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86792 * 120.00154 * 2 1 4 4 H 1.48499 * 109.47070 * 274.99799 * 3 2 1 5 5 H 1.48497 * 109.47484 * 34.99826 * 3 2 1 6 6 H 1.48497 * 109.47159 * 154.99839 * 3 2 1 7 7 C 1.38817 * 119.99488 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99499 * 174.38560 * 7 2 1 9 9 N 1.36933 * 120.00072 * 354.39279 * 7 2 1 10 10 C 1.47434 * 125.64514 * 185.05316 * 9 7 2 11 11 C 1.54903 * 104.82928 * 155.90585 * 10 9 7 12 12 C 1.55149 * 101.58426 * 37.00910 * 11 10 9 13 13 H 1.08997 * 110.72297 * 83.03888 * 12 11 10 14 14 C 1.53000 * 110.72041 * 206.13415 * 12 11 10 15 15 H 1.09002 * 109.50165 * 59.93509 * 14 12 11 16 16 C 1.53039 * 109.49935 * 299.83852 * 14 12 11 17 17 C 1.53038 * 109.54087 * 178.68457 * 16 14 12 18 18 C 1.52765 * 109.38636 * 61.24001 * 17 16 14 19 19 N 1.46927 * 109.00739 * 305.58999 * 18 17 16 20 20 C 1.34772 * 120.63294 * 233.58654 * 19 18 17 21 21 O 1.21528 * 120.00467 * 180.02562 * 20 19 18 22 22 C 1.48051 * 119.99759 * 0.03128 * 20 19 18 23 23 C 1.39380 * 119.69106 * 158.60987 * 22 20 19 24 24 C 1.38465 * 119.09480 * 180.22803 * 23 22 20 25 25 C 1.38901 * 118.46545 * 359.50336 * 24 23 22 26 26 F 1.35109 * 120.34966 * 180.27315 * 25 24 23 27 27 C 1.38874 * 119.30044 * 0.24938 * 25 24 23 28 28 N 1.31454 * 120.85718 * 0.02562 * 27 25 24 29 29 C 1.46936 * 118.73669 * 53.30383 * 19 18 17 30 30 C 1.47019 * 125.65233 * 5.09184 * 9 7 2 31 31 H 0.97001 * 119.99487 * 359.97438 * 1 2 3 32 32 H 1.08997 * 110.36629 * 37.06610 * 10 9 7 33 33 H 1.08999 * 110.36684 * 274.74631 * 10 9 7 34 34 H 1.09008 * 111.00241 * 278.93299 * 11 10 9 35 35 H 1.08998 * 111.03932 * 155.10367 * 11 10 9 36 36 H 1.09000 * 109.45884 * 298.70102 * 16 14 12 37 37 H 1.08996 * 109.46177 * 58.67585 * 16 14 12 38 38 H 1.09004 * 109.49833 * 181.31439 * 17 16 14 39 39 H 1.08997 * 109.49820 * 301.38338 * 17 16 14 40 40 H 1.08994 * 109.51137 * 185.71228 * 18 17 16 41 41 H 1.09003 * 109.43275 * 65.42154 * 18 17 16 42 42 H 1.07996 * 120.45545 * 359.97438 * 23 22 20 43 43 H 1.07995 * 120.76891 * 179.77825 * 24 23 22 44 44 H 1.08007 * 119.57377 * 180.02562 * 27 25 24 45 45 H 1.08995 * 109.58428 * 66.43760 * 29 19 18 46 46 H 1.08994 * 109.58311 * 186.85903 * 29 19 18 47 47 H 1.08996 * 109.88354 * 61.60790 * 30 9 7 48 48 H 1.08999 * 109.87974 * 300.44311 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3921 2.1073 -1.3947 5 1 1.5046 2.6198 0.8030 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2023 -0.0005 8 1 3.0863 -1.2045 -0.0920 9 7 1.3304 -2.3853 0.1148 10 6 1.9438 -3.7207 0.2336 11 6 0.8707 -4.5887 0.9369 12 6 -0.4365 -4.0378 0.3087 13 1 -0.6276 -4.5061 -0.6569 14 6 -1.6214 -4.2473 1.2536 15 1 -1.4346 -3.7263 2.1926 16 6 -1.8000 -5.7428 1.5252 17 6 -2.9644 -5.9512 2.4962 18 6 -4.2503 -5.4167 1.8681 19 7 -4.0416 -4.0188 1.4667 20 6 -4.8824 -3.0517 1.8841 21 8 -4.6993 -1.8992 1.5448 22 6 -6.0291 -3.3934 2.7560 23 6 -6.6199 -2.4034 3.5392 24 6 -7.6886 -2.7376 4.3538 25 6 -8.1383 -4.0518 4.3499 26 9 -9.1818 -4.4185 5.1259 27 6 -7.5044 -4.9847 3.5396 28 7 -6.4883 -4.6388 2.7808 29 6 -2.8952 -3.6943 0.6068 30 6 -0.1320 -2.5343 0.1399 31 1 -0.4849 0.8401 0.0004 32 1 2.8481 -3.6702 0.8401 33 1 2.1701 -4.1234 -0.7536 34 1 0.8838 -4.4285 2.0151 35 1 1.0039 -5.6441 0.6994 36 1 -2.0111 -6.2592 0.5889 37 1 -0.8860 -6.1440 1.9632 38 1 -3.0761 -7.0148 2.7074 39 1 -2.7649 -5.4150 3.4239 40 1 -5.0605 -5.4710 2.5951 41 1 -4.5018 -6.0147 0.9921 42 1 -6.2467 -1.3902 3.5143 43 1 -8.1643 -1.9928 4.9744 44 1 -7.8507 -6.0077 3.5329 45 1 -3.0340 -4.1489 -0.3741 46 1 -2.8118 -2.6126 0.5020 47 1 -0.5576 -2.1727 -0.7962 48 1 -0.5472 -1.9755 0.9786 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961134288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:15 Heat of formation + Delta-G solvation = -4.821955 kcal Electronic energy + Delta-G solvation = -30922.870673 eV Core-core repulsion = 26700.354492 eV Total energy + Delta-G solvation = -4222.516181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.49336 -41.12350 -39.48817 -38.06569 -36.60713 -33.77148 -32.90218 -32.10946 -31.64125 -31.03580 -28.58569 -27.18521 -26.03489 -24.63196 -24.31939 -23.88492 -22.55867 -21.23059 -19.93483 -19.64113 -19.23479 -18.11562 -17.98910 -17.27785 -16.73174 -16.39186 -15.96911 -15.51404 -15.20732 -15.00890 -14.56133 -14.37192 -14.34576 -14.07508 -13.82933 -13.67067 -13.62125 -13.43185 -12.90478 -12.80016 -12.71425 -12.37992 -12.21364 -11.67545 -11.45197 -11.12700 -11.02150 -10.80563 -10.75260 -10.72660 -10.50808 -10.47308 -10.23585 -10.14867 -9.94185 -9.78710 -9.62821 -9.48674 -9.43726 -9.26206 -8.48765 -8.46578 -6.71888 -5.61614 -2.94307 0.10862 0.55776 2.47523 2.89775 3.31852 3.45957 3.47399 3.51009 3.53625 3.77262 4.20747 4.22543 4.36005 4.58280 4.74948 4.91535 5.03981 5.05817 5.19260 5.22048 5.35202 5.39038 5.41395 5.54071 5.57896 5.68835 5.76352 5.77129 5.84076 5.90354 5.97767 6.06216 6.10036 6.16203 6.18701 6.25913 6.38476 6.45153 6.52950 6.65046 6.71409 6.76858 6.80845 7.06161 7.08713 7.46942 7.64666 7.74111 7.92788 8.14646 8.36730 9.32210 9.92902 10.60134 11.49886 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.002719 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.563034 B =10293.911472 C =11870.352454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.230 4.230 8 H 0.076 0.924 9 N -0.608 5.608 10 C 0.132 3.868 11 C -0.123 4.123 12 C -0.109 4.109 13 H 0.065 0.935 14 C -0.081 4.081 15 H 0.073 0.927 16 C -0.115 4.115 17 C -0.136 4.136 18 C 0.077 3.923 19 N -0.586 5.586 20 C 0.564 3.436 21 O -0.520 6.520 22 C 0.078 3.922 23 C -0.082 4.082 24 C -0.112 4.112 25 C 0.066 3.934 26 F -0.126 7.126 27 C 0.067 3.933 28 N -0.422 5.422 29 C 0.113 3.887 30 C 0.184 3.816 31 H 0.252 0.748 32 H 0.036 0.964 33 H 0.015 0.985 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.134 0.866 41 H 0.065 0.935 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.175 0.825 45 H 0.067 0.933 46 H 0.106 0.894 47 H 0.037 0.963 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.792 -14.748 9.125 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.334 5.334 10 C 0.006 3.994 11 C -0.161 4.161 12 C -0.129 4.129 13 H 0.084 0.916 14 C -0.101 4.101 15 H 0.092 0.908 16 C -0.153 4.153 17 C -0.175 4.175 18 C -0.045 4.045 19 N -0.317 5.317 20 C 0.349 3.651 21 O -0.395 6.395 22 C -0.059 4.059 23 C -0.102 4.102 24 C -0.139 4.139 25 C 0.044 3.956 26 F -0.105 7.105 27 C -0.093 4.093 28 N -0.133 5.133 29 C -0.008 4.008 30 C 0.060 3.940 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.084 0.916 42 H 0.178 0.822 43 H 0.174 0.826 44 H 0.192 0.808 45 H 0.085 0.915 46 H 0.124 0.876 47 H 0.055 0.945 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.351 -14.495 8.404 23.412 hybrid contribution -0.135 1.313 0.647 1.469 sum -16.486 -13.183 9.051 22.968 Atomic orbital electron populations 1.69962 1.04727 1.25006 1.56616 1.24820 0.95700 0.97536 1.02323 0.86165 0.78644 0.83941 0.77417 1.21763 1.21677 1.20760 1.19030 0.90801 0.82602 1.43451 0.90619 1.44495 1.01695 1.00753 1.86467 1.21556 0.94783 0.86803 0.96244 1.22728 0.95928 0.97710 0.99737 1.22458 0.92891 1.00448 0.97090 0.91626 1.21423 0.93954 0.95116 0.99584 0.90826 1.21625 0.97979 0.96572 0.99128 1.21899 0.95545 1.00769 0.99243 1.22698 0.99439 0.80612 1.01787 1.47980 1.26926 1.07902 1.48912 1.17750 0.81783 0.85236 0.80303 1.90889 1.72997 1.18901 1.56689 1.21435 0.97300 0.89398 0.97780 1.22089 0.93598 1.01691 0.92856 1.21718 0.97078 0.95285 0.99784 1.19036 0.88005 0.94687 0.93891 1.91555 1.54483 1.92010 1.72407 1.23105 0.92430 1.00558 0.93171 1.67729 1.09476 1.17586 1.18513 1.21879 0.83244 1.03727 0.91958 1.21201 0.84351 0.87732 1.00754 0.93724 0.94548 0.96729 0.91913 0.92490 0.92039 0.91600 0.91117 0.92032 0.85002 0.91640 0.82183 0.82646 0.80752 0.91451 0.87572 0.94522 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.76 10.35 55.49 0.57 -27.18 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 22.77 29.56 -169.99 -5.02 17.75 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.63 10.27 -15.06 -0.15 -6.79 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -16.00 3.39 -170.08 -0.58 -16.58 16 10 C 0.13 2.81 7.23 -2.53 -0.02 2.79 16 11 C -0.12 -2.13 5.38 -24.59 -0.13 -2.27 16 12 C -0.11 -1.99 2.49 -88.79 -0.22 -2.21 16 13 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 14 C -0.08 -1.28 1.74 -90.50 -0.16 -1.44 16 15 H 0.07 1.31 8.06 -51.93 -0.42 0.89 16 16 C -0.12 -1.41 4.97 -26.69 -0.13 -1.54 16 17 C -0.14 -1.44 6.06 -26.83 -0.16 -1.61 16 18 C 0.08 0.86 5.96 -3.93 -0.02 0.83 16 19 N -0.59 -8.46 2.98 -174.06 -0.52 -8.97 16 20 C 0.56 8.75 7.61 -12.24 -0.09 8.66 16 21 O -0.52 -10.06 15.93 5.34 0.09 -9.98 16 22 C 0.08 0.93 6.46 -83.02 -0.54 0.40 16 23 C -0.08 -0.81 9.62 -39.07 -0.38 -1.18 16 24 C -0.11 -0.84 10.15 -39.25 -0.40 -1.24 16 25 C 0.07 0.50 7.36 -39.10 -0.29 0.21 16 26 F -0.13 -0.96 17.28 2.25 0.04 -0.92 16 27 C 0.07 0.50 11.17 -17.48 -0.20 0.31 16 28 N -0.42 -4.19 6.35 -9.74 -0.06 -4.25 16 29 C 0.11 1.84 5.48 -3.70 -0.02 1.82 16 30 C 0.18 4.52 4.24 -3.07 -0.01 4.50 16 31 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 1.10 8.05 -51.92 -0.42 0.68 16 35 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.78 7.20 -51.93 -0.37 0.41 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.13 1.36 3.98 -79.44 -0.32 1.05 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.16 1.55 7.79 -52.49 -0.41 1.14 16 43 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.18 0.77 8.06 -52.48 -0.42 0.35 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.11 2.14 6.55 -51.93 -0.34 1.80 16 47 H 0.04 1.00 7.64 -51.93 -0.40 0.61 16 48 H 0.05 1.40 6.88 -51.93 -0.36 1.04 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -33.61 380.47 -9.99 -43.60 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.22 Total: -0.15 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -3.02 Total: 0.96 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.58 Total: -56.99 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.04 Total: -0.92 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.61 -9.99 -43.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961134288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.775 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds