Wall clock time and date at job start Wed Apr 1 2020 04:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86792 * 120.00154 * 2 1 4 4 H 1.48499 * 109.47070 * 274.99799 * 3 2 1 5 5 H 1.48497 * 109.47484 * 34.99826 * 3 2 1 6 6 H 1.48497 * 109.47159 * 154.99839 * 3 2 1 7 7 C 1.38817 * 119.99488 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99499 * 174.38560 * 7 2 1 9 9 N 1.36933 * 120.00072 * 354.39279 * 7 2 1 10 10 C 1.47434 * 125.64514 * 185.05316 * 9 7 2 11 11 C 1.54903 * 104.82928 * 155.90585 * 10 9 7 12 12 C 1.55149 * 101.58426 * 37.00910 * 11 10 9 13 13 H 1.08997 * 110.72297 * 83.03888 * 12 11 10 14 14 C 1.53000 * 110.72041 * 206.13415 * 12 11 10 15 15 H 1.09002 * 109.50165 * 59.93509 * 14 12 11 16 16 C 1.53039 * 109.49935 * 299.83852 * 14 12 11 17 17 C 1.53038 * 109.54087 * 178.68457 * 16 14 12 18 18 C 1.52765 * 109.38636 * 61.24001 * 17 16 14 19 19 N 1.46927 * 109.00739 * 305.58999 * 18 17 16 20 20 C 1.34772 * 120.63294 * 233.58654 * 19 18 17 21 21 O 1.21528 * 120.00467 * 180.02562 * 20 19 18 22 22 C 1.48051 * 119.99759 * 0.03128 * 20 19 18 23 23 C 1.39380 * 119.69106 * 158.60987 * 22 20 19 24 24 C 1.38465 * 119.09480 * 180.22803 * 23 22 20 25 25 C 1.38901 * 118.46545 * 359.50336 * 24 23 22 26 26 F 1.35109 * 120.34966 * 180.27315 * 25 24 23 27 27 C 1.38874 * 119.30044 * 0.24938 * 25 24 23 28 28 N 1.31454 * 120.85718 * 0.02562 * 27 25 24 29 29 C 1.46936 * 118.73669 * 53.30383 * 19 18 17 30 30 C 1.47019 * 125.65233 * 5.09184 * 9 7 2 31 31 H 0.97001 * 119.99487 * 359.97438 * 1 2 3 32 32 H 1.08997 * 110.36629 * 37.06610 * 10 9 7 33 33 H 1.08999 * 110.36684 * 274.74631 * 10 9 7 34 34 H 1.09008 * 111.00241 * 278.93299 * 11 10 9 35 35 H 1.08998 * 111.03932 * 155.10367 * 11 10 9 36 36 H 1.09000 * 109.45884 * 298.70102 * 16 14 12 37 37 H 1.08996 * 109.46177 * 58.67585 * 16 14 12 38 38 H 1.09004 * 109.49833 * 181.31439 * 17 16 14 39 39 H 1.08997 * 109.49820 * 301.38338 * 17 16 14 40 40 H 1.08994 * 109.51137 * 185.71228 * 18 17 16 41 41 H 1.09003 * 109.43275 * 65.42154 * 18 17 16 42 42 H 1.07996 * 120.45545 * 359.97438 * 23 22 20 43 43 H 1.07995 * 120.76891 * 179.77825 * 24 23 22 44 44 H 1.08007 * 119.57377 * 180.02562 * 27 25 24 45 45 H 1.08995 * 109.58428 * 66.43760 * 29 19 18 46 46 H 1.08994 * 109.58311 * 186.85903 * 29 19 18 47 47 H 1.08996 * 109.88354 * 61.60790 * 30 9 7 48 48 H 1.08999 * 109.87974 * 300.44311 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3921 2.1073 -1.3947 5 1 1.5046 2.6198 0.8030 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2023 -0.0005 8 1 3.0863 -1.2045 -0.0920 9 7 1.3304 -2.3853 0.1148 10 6 1.9438 -3.7207 0.2336 11 6 0.8707 -4.5887 0.9369 12 6 -0.4365 -4.0378 0.3087 13 1 -0.6276 -4.5061 -0.6569 14 6 -1.6214 -4.2473 1.2536 15 1 -1.4346 -3.7263 2.1926 16 6 -1.8000 -5.7428 1.5252 17 6 -2.9644 -5.9512 2.4962 18 6 -4.2503 -5.4167 1.8681 19 7 -4.0416 -4.0188 1.4667 20 6 -4.8824 -3.0517 1.8841 21 8 -4.6993 -1.8992 1.5448 22 6 -6.0291 -3.3934 2.7560 23 6 -6.6199 -2.4034 3.5392 24 6 -7.6886 -2.7376 4.3538 25 6 -8.1383 -4.0518 4.3499 26 9 -9.1818 -4.4185 5.1259 27 6 -7.5044 -4.9847 3.5396 28 7 -6.4883 -4.6388 2.7808 29 6 -2.8952 -3.6943 0.6068 30 6 -0.1320 -2.5343 0.1399 31 1 -0.4849 0.8401 0.0004 32 1 2.8481 -3.6702 0.8401 33 1 2.1701 -4.1234 -0.7536 34 1 0.8838 -4.4285 2.0151 35 1 1.0039 -5.6441 0.6994 36 1 -2.0111 -6.2592 0.5889 37 1 -0.8860 -6.1440 1.9632 38 1 -3.0761 -7.0148 2.7074 39 1 -2.7649 -5.4150 3.4239 40 1 -5.0605 -5.4710 2.5951 41 1 -4.5018 -6.0147 0.9921 42 1 -6.2467 -1.3902 3.5143 43 1 -8.1643 -1.9928 4.9744 44 1 -7.8507 -6.0077 3.5329 45 1 -3.0340 -4.1489 -0.3741 46 1 -2.8118 -2.6126 0.5020 47 1 -0.5576 -2.1727 -0.7962 48 1 -0.5472 -1.9755 0.9786 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961134288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:14 Heat of formation + Delta-G solvation = -25.177307 kcal Electronic energy + Delta-G solvation = -30923.753347 eV Core-core repulsion = 26700.354492 eV Total energy + Delta-G solvation = -4223.398855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.11186 -42.04663 -40.55807 -39.49305 -38.04440 -35.22409 -34.03335 -33.47094 -32.69800 -32.16240 -30.37117 -28.83354 -27.18576 -26.33569 -25.15756 -24.80433 -23.85173 -22.36426 -21.70393 -20.87711 -20.60591 -18.96122 -18.77489 -18.74019 -18.14819 -17.23164 -17.02650 -16.93056 -16.49377 -16.07945 -15.92318 -15.67358 -15.52676 -15.20984 -15.00967 -14.71390 -14.52070 -14.37093 -14.26564 -14.16626 -13.89272 -13.76340 -13.59037 -13.34376 -13.20121 -12.79914 -12.72096 -12.28234 -12.13344 -11.99917 -11.92748 -11.80956 -11.67870 -11.57963 -11.41017 -11.32586 -11.11784 -10.99862 -10.68492 -10.24584 -10.13897 -9.62239 -8.88021 -7.84748 -5.20213 -0.66969 -0.08683 1.41422 1.44150 1.48759 1.53659 1.82164 2.47403 2.48463 2.77936 2.95982 3.32586 3.45539 3.61379 3.65108 3.71047 3.75623 3.84390 3.98617 4.02950 4.17919 4.23776 4.31069 4.35382 4.45482 4.57810 4.63101 4.68911 4.72002 4.74410 4.78729 4.84006 4.92833 4.94105 5.06731 5.07678 5.13935 5.16891 5.23595 5.34831 5.41375 5.45981 5.48576 5.54042 5.66320 5.72495 5.82122 6.20681 6.25570 6.44372 6.99268 7.10093 7.80187 8.44796 9.24623 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.002719 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.563034 B =10293.911472 C =11870.352454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.070 4.070 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.244 4.244 8 H 0.083 0.917 9 N -0.634 5.634 10 C 0.122 3.878 11 C -0.104 4.104 12 C -0.095 4.095 13 H 0.082 0.918 14 C -0.070 4.070 15 H 0.043 0.957 16 C -0.108 4.108 17 C -0.130 4.130 18 C 0.073 3.927 19 N -0.586 5.586 20 C 0.553 3.447 21 O -0.578 6.578 22 C 0.057 3.943 23 C -0.090 4.090 24 C -0.102 4.102 25 C 0.076 3.924 26 F -0.121 7.121 27 C 0.079 3.921 28 N -0.427 5.427 29 C 0.118 3.882 30 C 0.198 3.802 31 H 0.243 0.757 32 H 0.042 0.958 33 H 0.026 0.974 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.049 0.951 40 H 0.146 0.854 41 H 0.081 0.919 42 H 0.150 0.850 43 H 0.183 0.817 44 H 0.213 0.787 45 H 0.079 0.921 46 H 0.051 0.949 47 H -0.009 1.009 48 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.513 -18.620 10.523 27.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.263 4.263 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.373 4.373 8 H 0.101 0.899 9 N -0.360 5.360 10 C -0.003 4.003 11 C -0.142 4.142 12 C -0.115 4.115 13 H 0.100 0.900 14 C -0.089 4.089 15 H 0.062 0.938 16 C -0.145 4.145 17 C -0.168 4.168 18 C -0.048 4.048 19 N -0.315 5.315 20 C 0.341 3.659 21 O -0.458 6.458 22 C -0.078 4.078 23 C -0.111 4.111 24 C -0.128 4.128 25 C 0.054 3.946 26 F -0.099 7.099 27 C -0.082 4.082 28 N -0.138 5.138 29 C -0.005 4.005 30 C 0.073 3.927 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.068 0.932 40 H 0.162 0.838 41 H 0.099 0.901 42 H 0.168 0.832 43 H 0.200 0.800 44 H 0.229 0.771 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.009 0.991 48 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -17.037 -18.438 9.811 26.953 hybrid contribution 0.023 2.479 0.228 2.489 sum -17.014 -15.959 10.038 25.396 Atomic orbital electron populations 1.70249 1.06363 1.24966 1.58055 1.25731 0.96563 1.01207 1.02803 0.85088 0.77859 0.79268 0.77322 1.21310 1.22310 1.18928 1.19470 0.91406 0.83987 1.42431 0.89944 1.44902 1.02634 1.02217 1.86271 1.21839 0.96046 0.85065 0.97329 1.22678 0.93009 0.99479 0.99081 1.22318 0.94812 0.95511 0.98831 0.90016 1.21273 0.92276 0.98168 0.97216 0.93799 1.21597 0.99513 0.92725 1.00659 1.21897 0.94159 1.02764 0.98017 1.23012 1.00523 0.78374 1.02861 1.48130 1.25798 1.09455 1.48152 1.18413 0.82696 0.84602 0.80192 1.90846 1.74722 1.21250 1.58982 1.20895 0.97145 0.91035 0.98767 1.22055 0.94517 1.01028 0.93496 1.21930 0.95772 0.96184 0.98874 1.19071 0.87631 0.94570 0.93349 1.91581 1.54199 1.91923 1.72193 1.23660 0.90983 1.02037 0.91550 1.67598 1.10572 1.16355 1.19279 1.21617 0.84961 1.00605 0.93323 1.20873 0.83490 0.91838 0.96530 0.94801 0.94014 0.95632 0.92016 0.87658 0.90193 0.90179 0.87393 0.93233 0.83757 0.90050 0.83181 0.79962 0.77064 0.90259 0.92986 0.99092 0.97676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.68 10.35 21.65 0.22 -61.45 16 2 C -0.07 -4.26 5.48 84.86 0.47 -3.80 16 3 Si 0.98 48.62 29.56 68.60 2.03 50.65 16 4 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 5 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 6 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.24 -14.50 10.27 84.04 0.86 -13.64 16 8 H 0.08 4.65 7.83 -2.91 -0.02 4.63 16 9 N -0.63 -34.59 3.39 -692.00 -2.35 -36.94 16 10 C 0.12 5.08 7.23 86.85 0.63 5.71 16 11 C -0.10 -3.41 5.38 31.98 0.17 -3.24 16 12 C -0.09 -3.49 2.49 -9.61 -0.02 -3.51 16 13 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 14 C -0.07 -2.23 1.74 -10.72 -0.02 -2.25 16 15 H 0.04 1.66 8.06 -2.39 -0.02 1.64 16 16 C -0.11 -2.29 4.97 30.62 0.15 -2.13 16 17 C -0.13 -2.35 6.06 30.53 0.19 -2.16 16 18 C 0.07 1.48 5.96 86.22 0.51 1.99 16 19 N -0.59 -17.58 2.98 -822.90 -2.45 -20.03 16 20 C 0.55 18.59 7.61 86.85 0.66 19.25 16 21 O -0.58 -25.21 15.93 -3.80 -0.06 -25.27 16 22 C 0.06 1.39 6.46 41.88 0.27 1.66 16 23 C -0.09 -1.82 9.62 22.60 0.22 -1.60 16 24 C -0.10 -1.34 10.15 22.48 0.23 -1.11 16 25 C 0.08 0.91 7.36 22.58 0.17 1.08 16 26 F -0.12 -1.41 17.28 44.97 0.78 -0.64 16 27 C 0.08 0.91 11.17 84.90 0.95 1.86 16 28 N -0.43 -7.72 6.35 -184.74 -1.17 -8.90 16 29 C 0.12 4.11 5.48 86.36 0.47 4.58 16 30 C 0.20 10.40 4.24 86.73 0.37 10.77 16 31 H 0.24 15.57 8.31 -92.71 -0.77 14.80 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 2.05 8.05 -2.38 -0.02 2.03 16 35 H 0.11 2.52 8.08 -2.39 -0.02 2.50 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.54 7.20 -2.39 -0.02 1.52 16 38 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.15 2.64 3.98 -56.70 -0.23 2.41 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.15 3.26 7.79 -2.91 -0.02 3.24 16 43 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.21 0.83 8.06 -2.91 -0.02 0.81 16 45 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.05 2.39 6.55 -2.39 -0.02 2.37 16 47 H -0.01 -0.55 7.64 -2.39 -0.02 -0.57 16 48 H 0.01 0.31 6.88 -2.39 -0.02 0.29 16 Total: -1.00 -82.16 380.47 4.02 -78.15 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.75 Total: 10.97 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 6.27 Total: 13.46 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -5.75 Total: -127.32 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.06 Total: -25.27 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.78 Total: -0.64 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -82.16 4.02 -78.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961134288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.969 kcal (2) G-P(sol) polarization free energy of solvation -82.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds