Wall clock time and date at job start Wed Apr 1 2020 04:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99868 * 2 1 4 4 H 1.48506 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47139 * 299.99990 * 3 2 1 6 6 H 1.48496 * 109.47297 * 59.99666 * 3 2 1 7 7 C 1.38814 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99497 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00234 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.64946 * 0.04115 * 9 7 2 11 11 C 1.54363 * 107.28705 * 181.05680 * 10 9 7 12 12 C 1.55156 * 102.92392 * 22.13976 * 11 10 9 13 13 H 1.09000 * 111.00202 * 82.63850 * 12 11 10 14 14 C 1.52993 * 111.00323 * 206.45236 * 12 11 10 15 15 H 1.08999 * 109.49947 * 56.88353 * 14 12 11 16 16 C 1.53037 * 109.52223 * 176.93257 * 14 12 11 17 17 C 1.53041 * 109.53915 * 181.30003 * 16 14 12 18 18 C 1.53192 * 109.34112 * 298.68349 * 17 16 14 19 19 N 1.46923 * 108.77726 * 54.61788 * 18 17 16 20 20 C 1.34771 * 120.63069 * 126.36725 * 19 18 17 21 21 O 1.21537 * 119.99952 * 176.28739 * 20 19 18 22 22 C 1.48001 * 120.00096 * 356.29402 * 20 19 18 23 23 N 1.32806 * 119.75143 * 40.00047 * 22 20 19 24 24 C 1.31428 * 121.66730 * 180.02562 * 23 22 20 25 25 C 1.38691 * 120.97856 * 359.97402 * 24 23 22 26 26 C 1.38444 * 119.39618 * 0.02562 * 25 24 23 27 27 C 1.38975 * 118.46645 * 359.72827 * 26 25 24 28 28 F 1.35094 * 120.50371 * 180.26202 * 27 26 25 29 29 C 1.46933 * 118.73640 * 306.39636 * 19 18 17 30 30 C 1.47419 * 125.64824 * 180.02562 * 9 7 2 31 31 H 0.96998 * 120.00232 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.88266 * 300.44730 * 10 9 7 33 33 H 1.08999 * 109.88104 * 61.44971 * 10 9 7 34 34 H 1.09005 * 110.70741 * 263.78926 * 11 10 9 35 35 H 1.09007 * 110.75646 * 140.50950 * 11 10 9 36 36 H 1.08999 * 109.43826 * 61.29941 * 16 14 12 37 37 H 1.09001 * 109.48802 * 301.33819 * 16 14 12 38 38 H 1.09011 * 109.49820 * 178.71485 * 17 16 14 39 39 H 1.09003 * 109.50052 * 58.65528 * 17 16 14 40 40 H 1.08997 * 109.58698 * 174.40683 * 18 17 16 41 41 H 1.09006 * 109.58285 * 294.83130 * 18 17 16 42 42 H 1.08000 * 119.51300 * 179.97438 * 24 23 22 43 43 H 1.07992 * 120.29853 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.76922 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.58362 * 173.39463 * 29 19 18 46 46 H 1.09001 * 109.58417 * 293.81800 * 29 19 18 47 47 H 1.08999 * 110.36775 * 37.06261 * 30 9 7 48 48 H 1.09005 * 110.36574 * 274.74443 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0009 11 6 -0.4489 -4.0445 0.0269 12 6 0.8514 -4.6560 0.6122 13 1 0.8557 -4.5963 1.7005 14 6 1.0369 -6.1007 0.1443 15 1 1.0426 -6.1324 -0.9452 16 6 2.3643 -6.6446 0.6775 17 6 2.5654 -8.0788 0.1829 18 6 1.4321 -8.9622 0.7138 19 7 0.1465 -8.3654 0.3270 20 6 -0.7763 -9.0914 -0.3346 21 8 -1.8617 -8.6076 -0.5896 22 6 -0.4679 -10.4779 -0.7506 23 7 0.2099 -11.2758 0.0665 24 6 0.5046 -12.5131 -0.2647 25 6 0.1156 -13.0363 -1.4888 26 6 -0.5931 -12.2413 -2.3734 27 6 -0.8962 -10.9385 -1.9964 28 9 -1.5904 -10.1287 -2.8254 29 6 -0.1138 -6.9617 0.6747 30 6 1.9335 -3.7311 0.0016 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5585 -2.0519 0.8821 33 1 -0.5537 -2.0823 -0.9019 34 1 -0.6319 -4.4189 -0.9804 35 1 -1.2992 -4.2519 0.6768 36 1 2.3485 -6.6352 1.7673 37 1 3.1829 -6.0193 0.3210 38 1 3.5217 -8.4575 0.5442 39 1 2.5573 -8.0924 -0.9070 40 1 1.5153 -9.9606 0.2845 41 1 1.4946 -9.0230 1.8003 42 1 1.0578 -13.1315 0.4265 43 1 0.3632 -14.0546 -1.7495 44 1 -0.9074 -12.6263 -3.3323 45 1 -1.0507 -6.6402 0.2196 46 1 -0.1774 -6.8594 1.7581 47 1 2.8323 -3.7402 0.6182 48 1 2.1677 -4.0423 -1.0165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961261050.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:26 Heat of formation + Delta-G solvation = -10.682432 kcal Electronic energy + Delta-G solvation = -30865.467117 eV Core-core repulsion = 26642.696807 eV Total energy + Delta-G solvation = -4222.770310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.35448 -41.11433 -39.72113 -38.19877 -36.67146 -33.88113 -32.99791 -32.27727 -31.62505 -30.95729 -28.87644 -27.36058 -26.07082 -24.84962 -24.30173 -23.81134 -22.75574 -21.32787 -19.80666 -19.73254 -19.45229 -18.13673 -17.92674 -17.48798 -16.74311 -16.65056 -16.04007 -15.75475 -15.37713 -14.77466 -14.59138 -14.52317 -14.42053 -14.03538 -13.86287 -13.79858 -13.69992 -13.44677 -13.09659 -12.91740 -12.84902 -12.24898 -12.11441 -11.88318 -11.72974 -11.17520 -11.04871 -10.98346 -10.82062 -10.75433 -10.62111 -10.56263 -10.44402 -10.03655 -9.97583 -9.81588 -9.70590 -9.61614 -9.52173 -9.49669 -8.67727 -8.53340 -6.74646 -5.64251 -2.97387 0.07283 0.43924 2.33075 2.64592 3.07015 3.43471 3.46661 3.48468 3.51310 3.74759 4.07562 4.10124 4.25782 4.54960 4.63379 4.74576 4.88356 4.90022 5.02177 5.04968 5.18922 5.24435 5.31080 5.42960 5.52095 5.54391 5.62864 5.66436 5.75611 5.80573 5.84134 5.93909 6.00080 6.02461 6.08154 6.13230 6.32166 6.35558 6.47593 6.52055 6.65356 6.68808 6.83296 7.04495 7.06576 7.21508 7.64397 7.74147 7.90691 7.91602 8.34133 9.29529 9.90315 10.57419 11.47451 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.024235 B = 0.002250 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.086796 B =12443.931384 C =13002.221912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.141 4.141 12 C -0.094 4.094 13 H 0.075 0.925 14 C -0.086 4.086 15 H 0.073 0.927 16 C -0.116 4.116 17 C -0.137 4.137 18 C 0.100 3.900 19 N -0.588 5.588 20 C 0.569 3.431 21 O -0.520 6.520 22 C 0.057 3.943 23 N -0.426 5.426 24 C 0.084 3.916 25 C -0.123 4.123 26 C -0.115 4.115 27 C 0.104 3.896 28 F -0.109 7.109 29 C 0.116 3.884 30 C 0.145 3.855 31 H 0.251 0.749 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.172 0.828 43 H 0.151 0.849 44 H 0.156 0.844 45 H 0.096 0.904 46 H 0.072 0.928 47 H 0.036 0.964 48 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.863 -31.023 -0.857 31.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.334 5.334 10 C 0.053 3.947 11 C -0.179 4.179 12 C -0.114 4.114 13 H 0.093 0.907 14 C -0.106 4.106 15 H 0.091 0.909 16 C -0.154 4.154 17 C -0.175 4.175 18 C -0.023 4.023 19 N -0.319 5.319 20 C 0.354 3.646 21 O -0.395 6.395 22 C -0.082 4.082 23 N -0.137 5.137 24 C -0.076 4.076 25 C -0.143 4.143 26 C -0.141 4.141 27 C 0.081 3.919 28 F -0.087 7.087 29 C -0.005 4.005 30 C 0.019 3.981 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.190 0.810 43 H 0.169 0.831 44 H 0.173 0.827 45 H 0.115 0.885 46 H 0.090 0.910 47 H 0.054 0.946 48 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 2.447 -30.108 -0.209 30.208 hybrid contribution 0.118 0.624 -0.994 1.180 sum 2.565 -29.483 -1.203 29.619 Atomic orbital electron populations 1.69991 1.04853 1.24781 1.57322 1.24812 0.95720 0.97643 1.02521 0.86056 0.78669 0.83922 0.77198 1.20560 1.21821 1.21818 1.19100 0.90405 0.82513 1.43369 0.90504 1.44506 1.01826 0.99940 1.87082 1.21133 0.84234 0.88470 1.00891 1.22942 0.96079 0.99380 0.99519 1.22304 0.97612 0.91592 0.99938 0.90699 1.21470 0.93902 0.94477 1.00761 0.90854 1.21606 0.97841 0.95064 1.00849 1.21988 0.98069 0.96250 1.01233 1.22174 0.81584 0.97925 1.00603 1.47959 1.16618 1.12489 1.54867 1.17681 0.84589 0.83819 0.78513 1.90861 1.22437 1.70867 1.55365 1.21389 0.99114 0.96305 0.91395 1.67843 1.08963 1.04982 1.31952 1.23014 0.97788 0.91275 0.95525 1.22305 0.96508 1.01390 0.94125 1.21739 0.98729 0.91673 1.01972 1.18631 0.94492 0.89632 0.89099 1.91627 1.75507 1.71859 1.69751 1.21842 1.00169 0.78103 1.00389 1.21510 0.94131 0.85973 0.96490 0.93881 0.93760 0.94145 0.92563 0.92292 0.91670 0.90988 0.90758 0.91877 0.87910 0.90934 0.81047 0.83085 0.82679 0.88523 0.91000 0.94592 0.96670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.95 10.31 55.49 0.57 -27.37 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.61 -16.02 3.39 -170.06 -0.58 -16.60 16 10 C 0.18 4.50 5.38 -3.04 -0.02 4.48 16 11 C -0.14 -2.76 5.55 -24.88 -0.14 -2.90 16 12 C -0.09 -1.65 2.56 -88.49 -0.23 -1.87 16 13 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 14 C -0.09 -1.22 1.84 -90.51 -0.17 -1.39 16 15 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 16 C -0.12 -1.36 5.02 -26.69 -0.13 -1.50 16 17 C -0.14 -1.34 6.08 -26.61 -0.16 -1.50 16 18 C 0.10 1.00 6.02 -3.71 -0.02 0.97 16 19 N -0.59 -7.60 2.97 -173.82 -0.52 -8.11 16 20 C 0.57 8.26 7.32 -12.26 -0.09 8.17 16 21 O -0.52 -9.35 15.67 5.33 0.08 -9.27 16 22 C 0.06 0.65 6.01 -82.95 -0.50 0.16 16 23 N -0.43 -3.83 7.27 -9.76 -0.07 -3.91 16 24 C 0.08 0.44 11.18 -17.56 -0.20 0.24 16 25 C -0.12 -0.50 10.11 -39.34 -0.40 -0.89 16 26 C -0.11 -0.71 10.16 -39.23 -0.40 -1.11 16 27 C 0.10 1.08 7.27 -38.82 -0.28 0.80 16 28 F -0.11 -1.41 16.24 2.25 0.04 -1.37 16 29 C 0.12 1.61 5.42 -3.71 -0.02 1.59 16 30 C 0.15 3.04 5.81 -2.54 -0.01 3.02 16 31 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.04 1.23 7.38 -51.93 -0.38 0.85 16 33 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 34 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.89 7.33 -51.93 -0.38 0.51 16 38 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.95 4.57 -51.93 -0.24 0.71 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.17 0.32 8.06 -52.49 -0.42 -0.10 16 43 H 0.15 0.08 8.06 -52.49 -0.42 -0.34 16 44 H 0.16 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.10 1.53 6.49 -51.93 -0.34 1.19 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.04 0.73 8.03 -51.93 -0.42 0.31 16 48 H 0.02 0.33 8.03 -51.93 -0.42 -0.09 16 LS Contribution 381.03 15.07 5.74 5.74 Total: -1.00 -35.13 381.03 -9.94 -45.07 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -7.17 Total: -3.04 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -3.01 Total: 1.26 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.59 Total: -55.99 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.13 -9.94 -45.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961261050.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.391 kcal (2) G-P(sol) polarization free energy of solvation -35.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds