Wall clock time and date at job start Wed Apr 1 2020 04:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99868 * 2 1 4 4 H 1.48506 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47139 * 299.99990 * 3 2 1 6 6 H 1.48496 * 109.47297 * 59.99666 * 3 2 1 7 7 C 1.38814 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99497 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00234 * 0.02562 * 7 2 1 10 10 C 1.47024 * 125.64946 * 0.04115 * 9 7 2 11 11 C 1.54363 * 107.28705 * 181.05680 * 10 9 7 12 12 C 1.55156 * 102.92392 * 22.13976 * 11 10 9 13 13 H 1.09000 * 111.00202 * 82.63850 * 12 11 10 14 14 C 1.52993 * 111.00323 * 206.45236 * 12 11 10 15 15 H 1.08999 * 109.49947 * 56.88353 * 14 12 11 16 16 C 1.53037 * 109.52223 * 176.93257 * 14 12 11 17 17 C 1.53041 * 109.53915 * 181.30003 * 16 14 12 18 18 C 1.53192 * 109.34112 * 298.68349 * 17 16 14 19 19 N 1.46923 * 108.77726 * 54.61788 * 18 17 16 20 20 C 1.34771 * 120.63069 * 126.36725 * 19 18 17 21 21 O 1.21537 * 119.99952 * 176.28739 * 20 19 18 22 22 C 1.48001 * 120.00096 * 356.29402 * 20 19 18 23 23 N 1.32806 * 119.75143 * 40.00047 * 22 20 19 24 24 C 1.31428 * 121.66730 * 180.02562 * 23 22 20 25 25 C 1.38691 * 120.97856 * 359.97402 * 24 23 22 26 26 C 1.38444 * 119.39618 * 0.02562 * 25 24 23 27 27 C 1.38975 * 118.46645 * 359.72827 * 26 25 24 28 28 F 1.35094 * 120.50371 * 180.26202 * 27 26 25 29 29 C 1.46933 * 118.73640 * 306.39636 * 19 18 17 30 30 C 1.47419 * 125.64824 * 180.02562 * 9 7 2 31 31 H 0.96998 * 120.00232 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.88266 * 300.44730 * 10 9 7 33 33 H 1.08999 * 109.88104 * 61.44971 * 10 9 7 34 34 H 1.09005 * 110.70741 * 263.78926 * 11 10 9 35 35 H 1.09007 * 110.75646 * 140.50950 * 11 10 9 36 36 H 1.08999 * 109.43826 * 61.29941 * 16 14 12 37 37 H 1.09001 * 109.48802 * 301.33819 * 16 14 12 38 38 H 1.09011 * 109.49820 * 178.71485 * 17 16 14 39 39 H 1.09003 * 109.50052 * 58.65528 * 17 16 14 40 40 H 1.08997 * 109.58698 * 174.40683 * 18 17 16 41 41 H 1.09006 * 109.58285 * 294.83130 * 18 17 16 42 42 H 1.08000 * 119.51300 * 179.97438 * 24 23 22 43 43 H 1.07992 * 120.29853 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.76922 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.58362 * 173.39463 * 29 19 18 46 46 H 1.09001 * 109.58417 * 293.81800 * 29 19 18 47 47 H 1.08999 * 110.36775 * 37.06261 * 30 9 7 48 48 H 1.09005 * 110.36574 * 274.74443 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0009 11 6 -0.4489 -4.0445 0.0269 12 6 0.8514 -4.6560 0.6122 13 1 0.8557 -4.5963 1.7005 14 6 1.0369 -6.1007 0.1443 15 1 1.0426 -6.1324 -0.9452 16 6 2.3643 -6.6446 0.6775 17 6 2.5654 -8.0788 0.1829 18 6 1.4321 -8.9622 0.7138 19 7 0.1465 -8.3654 0.3270 20 6 -0.7763 -9.0914 -0.3346 21 8 -1.8617 -8.6076 -0.5896 22 6 -0.4679 -10.4779 -0.7506 23 7 0.2099 -11.2758 0.0665 24 6 0.5046 -12.5131 -0.2647 25 6 0.1156 -13.0363 -1.4888 26 6 -0.5931 -12.2413 -2.3734 27 6 -0.8962 -10.9385 -1.9964 28 9 -1.5904 -10.1287 -2.8254 29 6 -0.1138 -6.9617 0.6747 30 6 1.9335 -3.7311 0.0016 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5585 -2.0519 0.8821 33 1 -0.5537 -2.0823 -0.9019 34 1 -0.6319 -4.4189 -0.9804 35 1 -1.2992 -4.2519 0.6768 36 1 2.3485 -6.6352 1.7673 37 1 3.1829 -6.0193 0.3210 38 1 3.5217 -8.4575 0.5442 39 1 2.5573 -8.0924 -0.9070 40 1 1.5153 -9.9606 0.2845 41 1 1.4946 -9.0230 1.8003 42 1 1.0578 -13.1315 0.4265 43 1 0.3632 -14.0546 -1.7495 44 1 -0.9074 -12.6263 -3.3323 45 1 -1.0507 -6.6402 0.2196 46 1 -0.1774 -6.8594 1.7581 47 1 2.8323 -3.7402 0.6182 48 1 2.1677 -4.0423 -1.0165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961261050.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:25 Heat of formation + Delta-G solvation = -32.557710 kcal Electronic energy + Delta-G solvation = -30866.415701 eV Core-core repulsion = 26642.696807 eV Total energy + Delta-G solvation = -4223.718893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.15196 -41.90150 -40.59849 -39.56556 -38.06991 -35.28617 -33.99338 -33.38064 -32.58761 -32.09070 -30.68229 -28.93477 -27.00871 -26.54857 -25.15992 -24.59341 -23.87133 -22.47334 -21.66782 -20.96327 -20.61157 -18.92830 -18.80749 -18.63508 -18.17094 -17.53159 -17.01956 -16.79091 -16.56283 -16.31025 -15.93359 -15.60158 -15.51292 -15.21505 -14.97995 -14.73900 -14.38812 -14.29677 -14.23834 -14.00732 -13.92831 -13.83608 -13.58347 -13.44519 -13.20829 -12.82084 -12.79465 -12.33150 -12.13163 -12.09807 -11.96206 -11.77955 -11.74381 -11.57966 -11.42469 -11.35869 -11.08041 -10.96269 -10.73179 -10.44859 -10.17086 -9.69708 -8.90804 -7.85388 -5.21613 -0.53092 -0.04688 1.42589 1.44139 1.46058 1.56461 1.75095 2.48796 2.49258 2.83012 3.05168 3.32511 3.49359 3.57699 3.59684 3.69177 3.81274 3.89307 3.90739 4.08584 4.16479 4.19393 4.29451 4.37200 4.40714 4.53514 4.55164 4.63011 4.69651 4.76937 4.81639 4.86636 4.89633 4.92627 4.93946 4.97702 5.04038 5.11729 5.15044 5.31780 5.38855 5.44735 5.45280 5.52982 5.54438 5.64850 5.75637 6.18995 6.21605 6.52744 6.90402 7.08942 7.77273 8.43043 9.25656 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.024235 B = 0.002250 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.086796 B =12443.931384 C =13002.221912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.073 4.073 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.086 0.914 9 N -0.630 5.630 10 C 0.186 3.814 11 C -0.128 4.128 12 C -0.076 4.076 13 H 0.082 0.918 14 C -0.073 4.073 15 H 0.057 0.943 16 C -0.113 4.113 17 C -0.129 4.129 18 C 0.098 3.902 19 N -0.587 5.587 20 C 0.559 3.441 21 O -0.573 6.573 22 C 0.028 3.972 23 N -0.441 5.441 24 C 0.090 3.910 25 C -0.096 4.096 26 C -0.110 4.110 27 C 0.071 3.929 28 F -0.137 7.137 29 C 0.119 3.881 30 C 0.142 3.858 31 H 0.246 0.754 32 H 0.011 0.989 33 H -0.001 1.001 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.053 0.947 40 H 0.115 0.885 41 H 0.087 0.913 42 H 0.214 0.786 43 H 0.201 0.799 44 H 0.181 0.819 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.049 0.951 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.778 -35.102 -0.075 35.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.266 4.266 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.103 0.897 9 N -0.356 5.356 10 C 0.061 3.939 11 C -0.166 4.166 12 C -0.095 4.095 13 H 0.101 0.899 14 C -0.093 4.093 15 H 0.075 0.925 16 C -0.151 4.151 17 C -0.167 4.167 18 C -0.023 4.023 19 N -0.317 5.317 20 C 0.346 3.654 21 O -0.453 6.453 22 C -0.108 4.108 23 N -0.153 5.153 24 C -0.070 4.070 25 C -0.115 4.115 26 C -0.136 4.136 27 C 0.049 3.951 28 F -0.115 7.115 29 C -0.003 4.003 30 C 0.018 3.982 31 H 0.055 0.945 32 H 0.029 0.971 33 H 0.017 0.983 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.072 0.928 40 H 0.133 0.867 41 H 0.105 0.895 42 H 0.230 0.770 43 H 0.218 0.782 44 H 0.198 0.802 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.067 0.933 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 5.419 -34.223 0.580 34.654 hybrid contribution -0.736 1.719 -1.245 2.247 sum 4.683 -32.503 -0.665 32.846 Atomic orbital electron populations 1.70233 1.06504 1.25147 1.58591 1.25748 0.96659 1.01341 1.02821 0.84951 0.78263 0.79135 0.76641 1.18597 1.22102 1.21828 1.19547 0.91092 0.83693 1.42533 0.89653 1.44854 1.02379 1.01473 1.86927 1.20867 0.84046 0.91675 0.97300 1.22783 0.98111 0.95403 1.00339 1.22174 0.94489 0.92896 0.99974 0.89919 1.21294 0.95898 0.92333 0.99773 0.92459 1.21596 0.95624 0.96283 1.01583 1.21951 0.99352 0.94732 1.00662 1.22405 0.79945 0.98399 1.01526 1.48076 1.17526 1.11834 1.54282 1.18306 0.84028 0.85324 0.77776 1.90809 1.24566 1.72470 1.57421 1.20924 1.01999 0.95285 0.92622 1.67785 1.09324 1.06500 1.31696 1.23838 0.96474 0.90072 0.96661 1.22875 0.93362 1.02800 0.92497 1.22134 0.98202 0.89778 1.03477 1.19104 0.95726 0.91221 0.89075 1.91549 1.76476 1.73024 1.70484 1.21672 0.98729 0.79126 1.00804 1.21688 0.95389 0.84164 0.96992 0.94512 0.97108 0.98287 0.92502 0.90675 0.90346 0.91294 0.87726 0.92835 0.86710 0.89478 0.76960 0.78239 0.80190 0.91167 0.89691 0.93270 0.96560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.54 10.31 21.65 0.22 -60.32 16 2 C -0.07 -4.36 5.49 84.86 0.47 -3.89 16 3 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.24 -13.98 10.28 84.03 0.86 -13.12 16 8 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 9 N -0.63 -34.18 3.39 -691.95 -2.35 -36.53 16 10 C 0.19 9.98 5.38 86.74 0.47 10.45 16 11 C -0.13 -5.22 5.55 31.80 0.18 -5.04 16 12 C -0.08 -2.62 2.56 -9.41 -0.02 -2.65 16 13 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 14 C -0.07 -2.04 1.84 -10.72 -0.02 -2.06 16 15 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 16 C -0.11 -2.41 5.02 30.62 0.15 -2.26 16 17 C -0.13 -2.16 6.08 30.67 0.19 -1.98 16 18 C 0.10 1.75 6.02 86.36 0.52 2.27 16 19 N -0.59 -15.11 2.97 -822.12 -2.44 -17.56 16 20 C 0.56 16.91 7.32 86.83 0.64 17.55 16 21 O -0.57 -22.29 15.67 -3.83 -0.06 -22.35 16 22 C 0.03 0.65 6.01 41.91 0.25 0.90 16 23 N -0.44 -6.90 7.27 -184.78 -1.34 -8.24 16 24 C 0.09 0.53 11.18 84.86 0.95 1.48 16 25 C -0.10 -0.28 10.11 22.43 0.23 -0.05 16 26 C -0.11 -1.05 10.16 22.50 0.23 -0.82 16 27 C 0.07 1.49 7.27 22.76 0.17 1.65 16 28 F -0.14 -3.79 16.24 44.97 0.73 -3.06 16 29 C 0.12 3.31 5.42 86.36 0.47 3.78 16 30 C 0.14 5.97 5.81 86.85 0.50 6.47 16 31 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.01 0.63 7.38 -2.38 -0.02 0.62 16 33 H 0.00 -0.07 7.50 -2.39 -0.02 -0.09 16 34 H 0.06 2.30 8.04 -2.38 -0.02 2.28 16 35 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.54 7.33 -2.39 -0.02 1.52 16 38 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.12 1.83 4.57 -2.39 -0.01 1.82 16 41 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.21 -0.54 8.06 -2.91 -0.02 -0.57 16 43 H 0.20 -1.27 8.06 -2.91 -0.02 -1.30 16 44 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 45 H 0.07 2.34 6.49 -2.39 -0.02 2.33 16 46 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.05 1.93 8.03 -2.39 -0.02 1.91 16 48 H 0.02 0.70 8.03 -2.38 -0.02 0.68 16 Total: -1.00 -84.41 381.03 3.97 -80.44 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 0.96 Total: 5.51 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 6.22 Total: 12.67 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -5.91 Total: -122.64 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.06 Total: -22.35 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.73 Total: -3.06 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -84.41 3.97 -80.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961261050.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.887 kcal (2) G-P(sol) polarization free energy of solvation -84.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds