Wall clock time and date at job start Wed Apr 1 2020 04:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47206 * 95.54686 * 3 2 1 5 5 H 1.48508 * 109.47402 * 215.54760 * 3 2 1 6 6 H 1.48503 * 109.47380 * 335.54762 * 3 2 1 7 7 C 1.38814 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00030 * 10.89093 * 7 2 1 9 9 N 1.36942 * 119.99981 * 190.89580 * 7 2 1 10 10 C 1.47425 * 125.64482 * 222.72647 * 9 7 2 11 11 C 1.55129 * 104.72248 * 155.81613 * 10 9 7 12 12 C 1.55156 * 101.48447 * 37.29288 * 11 10 9 13 13 C 1.47022 * 125.64924 * 43.03156 * 9 7 2 14 14 H 1.08999 * 109.88255 * 300.44013 * 13 9 7 15 15 C 1.52992 * 109.88338 * 61.45301 * 13 9 7 16 16 H 1.09003 * 109.49989 * 173.90881 * 15 13 9 17 17 C 1.53039 * 109.49985 * 294.00932 * 15 13 9 18 18 C 1.53040 * 109.53906 * 181.31637 * 17 15 13 19 19 C 1.53184 * 109.31392 * 298.63120 * 18 17 15 20 20 N 1.46928 * 108.77603 * 54.63735 * 19 18 17 21 21 C 1.34780 * 120.63493 * 126.41178 * 20 19 18 22 22 O 1.21565 * 119.99969 * 186.74929 * 21 20 19 23 23 C 1.47730 * 119.99532 * 6.74399 * 21 20 19 24 24 C 1.40152 * 120.52715 * 207.85811 * 23 21 20 25 25 C 1.38150 * 118.32162 * 180.02562 * 24 23 21 26 26 C 1.38754 * 119.28422 * 0.02562 * 25 24 23 27 27 F 1.35101 * 119.49001 * 179.97438 * 26 25 24 28 28 N 1.32147 * 121.01392 * 0.02562 * 26 25 24 29 29 C 1.31685 * 121.84032 * 359.69899 * 28 26 25 30 30 C 1.46931 * 118.73810 * 306.39250 * 20 19 18 31 31 H 0.96999 * 119.99987 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.36719 * 274.74547 * 10 9 7 33 33 H 1.08997 * 110.36628 * 37.06771 * 10 9 7 34 34 H 1.09007 * 111.19022 * 279.19241 * 11 10 9 35 35 H 1.08995 * 110.94176 * 155.28992 * 11 10 9 36 36 H 1.09003 * 110.71646 * 205.97355 * 12 11 10 37 37 H 1.09002 * 110.71779 * 82.70138 * 12 11 10 38 38 H 1.09002 * 109.45798 * 301.34097 * 17 15 13 39 39 H 1.08995 * 109.45962 * 61.29210 * 17 15 13 40 40 H 1.09003 * 109.49499 * 178.67981 * 18 17 15 41 41 H 1.08997 * 109.52438 * 58.60069 * 18 17 15 42 42 H 1.09000 * 109.59043 * 294.85432 * 19 18 17 43 43 H 1.08999 * 109.70608 * 174.49330 * 19 18 17 44 44 H 1.08003 * 120.84081 * 0.03127 * 24 23 21 45 45 H 1.08004 * 120.35670 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.70508 * 180.31613 * 29 28 26 47 47 H 1.08999 * 109.58508 * 293.82185 * 30 20 19 48 48 H 1.08996 * 109.70532 * 173.46560 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6149 1.9787 1.3935 5 1 3.4843 1.4769 -0.8140 6 1 1.3940 2.6837 -0.5795 7 6 2.0103 -1.2022 -0.0005 8 1 1.4849 -2.1290 -0.1777 9 7 3.3612 -1.2129 0.2236 10 6 4.3486 -2.0186 -0.5175 11 6 5.6874 -1.2529 -0.3503 12 6 5.5708 -0.7420 1.1101 13 6 4.0662 -0.4277 1.2474 14 1 3.8931 0.6358 1.0832 15 6 3.5730 -0.8261 2.6398 16 1 4.1732 -0.3210 3.3966 17 6 2.1054 -0.4216 2.7970 18 6 1.6206 -0.7900 4.2010 19 6 1.7273 -2.3061 4.3923 20 7 3.1055 -2.7237 4.1010 21 6 3.8093 -3.4429 4.9977 22 8 4.9856 -3.6775 4.7999 23 6 3.1511 -3.9459 6.2209 24 6 3.8922 -4.1614 7.3908 25 6 3.2307 -4.6331 8.5081 26 6 1.8666 -4.8766 8.4368 27 9 1.2156 -5.3385 9.5269 28 7 1.1946 -4.6647 7.3189 29 6 1.7815 -4.2108 6.2310 30 6 3.7019 -2.3427 2.8134 31 1 -0.4850 0.8400 0.0004 32 1 4.4237 -3.0170 -0.0868 33 1 4.0754 -2.0785 -1.5709 34 1 5.7555 -0.4207 -1.0511 35 1 6.5376 -1.9257 -0.4622 36 1 6.1675 0.1591 1.2522 37 1 5.8686 -1.5182 1.8150 38 1 2.0074 0.6539 2.6494 39 1 1.5028 -0.9460 2.0554 40 1 0.5822 -0.4804 4.3202 41 1 2.2382 -0.2852 4.9438 42 1 1.0413 -2.8096 3.7111 43 1 1.4766 -2.5653 5.4209 44 1 4.9536 -3.9637 7.4182 45 1 3.7697 -4.8112 9.4269 46 1 1.1979 -4.0452 5.3374 47 1 3.1769 -2.8491 2.0035 48 1 4.7548 -2.6240 2.7985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963270321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:54 Heat of formation + Delta-G solvation = 11.801707 kcal Electronic energy + Delta-G solvation = -32137.223691 eV Core-core repulsion = 27915.428366 eV Total energy + Delta-G solvation = -4221.795325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.37066 -41.08396 -39.54752 -38.33521 -36.52579 -33.22612 -33.07172 -32.68118 -31.48481 -30.72973 -30.00054 -27.23727 -25.91571 -24.60980 -24.29821 -23.70115 -22.68961 -20.83535 -20.20912 -19.83712 -19.07235 -18.36683 -18.04944 -17.06587 -16.67274 -16.41311 -16.15260 -15.62489 -15.07126 -15.00378 -14.82802 -14.29249 -14.11137 -13.88858 -13.60608 -13.49638 -13.41125 -13.32645 -13.21089 -12.98877 -12.70112 -12.56502 -12.06393 -11.95238 -11.58845 -11.35561 -11.17130 -10.90369 -10.71947 -10.50070 -10.43392 -10.41336 -10.35136 -10.16755 -10.13282 -9.81619 -9.69128 -9.63348 -9.31888 -9.24881 -8.53265 -8.24668 -6.73831 -6.09118 -3.57790 0.21663 0.69488 2.61110 2.99590 3.15405 3.24375 3.37910 3.40023 3.44736 4.06823 4.28404 4.39949 4.42888 4.49500 4.92372 4.94848 4.98238 5.14614 5.17652 5.29962 5.34225 5.40480 5.45225 5.54659 5.56804 5.59029 5.67928 5.73745 5.82912 5.95613 6.10983 6.12067 6.15452 6.20256 6.24371 6.30875 6.37672 6.45386 6.56629 6.65905 6.70039 6.78354 6.86479 6.87427 6.97535 7.17027 7.51092 7.55576 7.96105 8.14514 8.27150 8.79315 9.56327 10.21953 11.04924 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.003353 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.892437 B = 8349.366114 C = 9325.076996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.049 3.951 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.273 1.273 6 H -0.306 1.306 7 C -0.248 4.248 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.128 3.872 11 C -0.136 4.136 12 C -0.132 4.132 13 C 0.150 3.850 14 H 0.038 0.962 15 C -0.095 4.095 16 H 0.051 0.949 17 C -0.139 4.139 18 C -0.130 4.130 19 C 0.086 3.914 20 N -0.594 5.594 21 C 0.561 3.439 22 O -0.541 6.541 23 C -0.190 4.190 24 C 0.007 3.993 25 C -0.201 4.201 26 C 0.323 3.677 27 F -0.109 7.109 28 N -0.515 5.515 29 C 0.160 3.840 30 C 0.127 3.873 31 H 0.265 0.735 32 H 0.026 0.974 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.131 0.869 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.189 0.811 47 H 0.091 0.909 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.602 -5.652 13.276 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.152 4.152 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.199 1.199 6 H -0.234 1.234 7 C -0.376 4.376 8 H 0.099 0.901 9 N -0.329 5.329 10 C 0.003 3.997 11 C -0.175 4.175 12 C -0.170 4.170 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.117 4.117 16 H 0.069 0.931 17 C -0.176 4.176 18 C -0.168 4.168 19 C -0.036 4.036 20 N -0.325 5.325 21 C 0.348 3.652 22 O -0.419 6.419 23 C -0.196 4.196 24 C -0.019 4.019 25 C -0.222 4.222 26 C 0.170 3.830 27 F -0.088 7.088 28 N -0.229 5.229 29 C 0.003 3.997 30 C 0.006 3.994 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.149 0.851 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.174 0.826 45 H 0.172 0.828 46 H 0.206 0.794 47 H 0.109 0.891 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.040 -5.874 13.156 15.623 hybrid contribution 1.025 1.317 0.394 1.714 sum 7.065 -4.557 13.551 15.947 Atomic orbital electron populations 1.69755 1.05695 1.26911 1.51884 1.25517 0.95026 0.97700 0.96997 0.87000 0.79479 0.84021 0.77843 1.20403 1.19894 1.23409 1.18370 0.79833 0.93346 1.46051 0.90141 1.44673 1.03109 1.51084 1.34037 1.21813 0.88035 0.93764 0.96090 1.22794 0.98272 1.00000 0.96399 1.22671 0.96395 1.00651 0.97326 1.21248 0.90383 0.95572 0.88470 0.94494 1.21725 0.97571 0.94640 0.97716 0.93089 1.22195 0.96611 1.02253 0.96507 1.21916 1.01561 0.93944 0.99426 1.22493 0.82683 0.97241 1.01177 1.48120 1.14724 1.51712 1.17912 1.17856 0.86048 0.78951 0.82386 1.90769 1.15096 1.59125 1.76950 1.21127 0.95565 1.06321 0.96574 1.21590 1.01070 0.89735 0.89549 1.21805 0.93306 1.05420 1.01701 1.18447 0.87601 0.93737 0.83245 1.91645 1.82312 1.85203 1.49661 1.67128 1.40935 1.15546 0.99314 1.23489 0.91256 0.89453 0.95479 1.21802 0.99183 0.95921 0.82494 0.92486 0.95614 0.93371 0.91875 0.91948 0.92171 0.91077 0.92675 0.85142 0.90895 0.93008 0.89831 0.89578 0.82603 0.82770 0.79424 0.89093 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.79 13.97 55.49 0.78 -24.01 16 2 C 0.05 1.28 3.70 -17.43 -0.06 1.21 16 3 Si 0.88 21.25 23.28 -169.99 -3.96 17.29 16 4 H -0.28 -6.39 5.65 56.52 0.32 -6.07 16 5 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.31 -7.60 7.11 56.52 0.40 -7.20 16 7 C -0.25 -6.16 8.14 -15.06 -0.12 -6.28 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 9 N -0.60 -12.92 1.52 -162.44 -0.25 -13.17 16 10 C 0.13 2.38 7.24 -2.41 -0.02 2.36 16 11 C -0.14 -2.19 7.10 -24.46 -0.17 -2.37 16 12 C -0.13 -2.19 6.30 -24.90 -0.16 -2.35 16 13 C 0.15 2.94 2.11 -66.96 -0.14 2.80 16 14 H 0.04 0.82 3.53 -51.93 -0.18 0.64 16 15 C -0.10 -1.74 2.15 -90.50 -0.19 -1.94 16 16 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 17 C -0.14 -2.67 3.64 -26.69 -0.10 -2.77 16 18 C -0.13 -1.99 6.08 -26.62 -0.16 -2.16 16 19 C 0.09 1.16 4.70 -3.71 -0.02 1.15 16 20 N -0.59 -8.99 2.97 -173.92 -0.52 -9.51 16 21 C 0.56 8.38 7.48 -12.38 -0.09 8.29 16 22 O -0.54 -9.55 16.16 5.31 0.09 -9.47 16 23 C -0.19 -2.31 5.51 -104.83 -0.58 -2.88 16 24 C 0.01 0.07 9.72 -38.90 -0.38 -0.31 16 25 C -0.20 -1.77 10.07 -39.42 -0.40 -2.16 16 26 C 0.32 3.54 8.41 -17.23 -0.14 3.39 16 27 F -0.11 -1.19 17.29 2.25 0.04 -1.15 16 28 N -0.52 -6.33 10.36 -13.22 -0.14 -6.47 16 29 C 0.16 1.85 8.62 -17.14 -0.15 1.70 16 30 C 0.13 2.18 5.29 -3.71 -0.02 2.16 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.12 6.11 -51.93 -0.32 0.80 16 38 H 0.05 1.16 5.63 -51.93 -0.29 0.87 16 39 H 0.13 2.92 4.59 -51.93 -0.24 2.68 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.13 8.00 -51.93 -0.42 0.71 16 43 H 0.09 0.98 4.07 -51.93 -0.21 0.77 16 44 H 0.16 1.37 7.96 -52.48 -0.42 0.96 16 45 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 46 H 0.19 1.96 5.25 -52.48 -0.28 1.68 16 47 H 0.09 1.73 7.21 -51.93 -0.37 1.35 16 48 H 0.08 1.46 5.37 -51.93 -0.28 1.18 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -28.70 358.93 -7.90 -36.60 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.45 Total: 4.62 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -2.90 Total: -0.15 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.13 Total: -53.16 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -3.96 Total: 17.29 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.70 -7.90 -36.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963270321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.401 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds