Wall clock time and date at job start Wed Apr 1 2020 04:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47206 * 95.54686 * 3 2 1 5 5 H 1.48508 * 109.47402 * 215.54760 * 3 2 1 6 6 H 1.48503 * 109.47380 * 335.54762 * 3 2 1 7 7 C 1.38814 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00030 * 10.89093 * 7 2 1 9 9 N 1.36942 * 119.99981 * 190.89580 * 7 2 1 10 10 C 1.47425 * 125.64482 * 222.72647 * 9 7 2 11 11 C 1.55129 * 104.72248 * 155.81613 * 10 9 7 12 12 C 1.55156 * 101.48447 * 37.29288 * 11 10 9 13 13 C 1.47022 * 125.64924 * 43.03156 * 9 7 2 14 14 H 1.08999 * 109.88255 * 300.44013 * 13 9 7 15 15 C 1.52992 * 109.88338 * 61.45301 * 13 9 7 16 16 H 1.09003 * 109.49989 * 173.90881 * 15 13 9 17 17 C 1.53039 * 109.49985 * 294.00932 * 15 13 9 18 18 C 1.53040 * 109.53906 * 181.31637 * 17 15 13 19 19 C 1.53184 * 109.31392 * 298.63120 * 18 17 15 20 20 N 1.46928 * 108.77603 * 54.63735 * 19 18 17 21 21 C 1.34780 * 120.63493 * 126.41178 * 20 19 18 22 22 O 1.21565 * 119.99969 * 186.74929 * 21 20 19 23 23 C 1.47730 * 119.99532 * 6.74399 * 21 20 19 24 24 C 1.40152 * 120.52715 * 207.85811 * 23 21 20 25 25 C 1.38150 * 118.32162 * 180.02562 * 24 23 21 26 26 C 1.38754 * 119.28422 * 0.02562 * 25 24 23 27 27 F 1.35101 * 119.49001 * 179.97438 * 26 25 24 28 28 N 1.32147 * 121.01392 * 0.02562 * 26 25 24 29 29 C 1.31685 * 121.84032 * 359.69899 * 28 26 25 30 30 C 1.46931 * 118.73810 * 306.39250 * 20 19 18 31 31 H 0.96999 * 119.99987 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.36719 * 274.74547 * 10 9 7 33 33 H 1.08997 * 110.36628 * 37.06771 * 10 9 7 34 34 H 1.09007 * 111.19022 * 279.19241 * 11 10 9 35 35 H 1.08995 * 110.94176 * 155.28992 * 11 10 9 36 36 H 1.09003 * 110.71646 * 205.97355 * 12 11 10 37 37 H 1.09002 * 110.71779 * 82.70138 * 12 11 10 38 38 H 1.09002 * 109.45798 * 301.34097 * 17 15 13 39 39 H 1.08995 * 109.45962 * 61.29210 * 17 15 13 40 40 H 1.09003 * 109.49499 * 178.67981 * 18 17 15 41 41 H 1.08997 * 109.52438 * 58.60069 * 18 17 15 42 42 H 1.09000 * 109.59043 * 294.85432 * 19 18 17 43 43 H 1.08999 * 109.70608 * 174.49330 * 19 18 17 44 44 H 1.08003 * 120.84081 * 0.03127 * 24 23 21 45 45 H 1.08004 * 120.35670 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.70508 * 180.31613 * 29 28 26 47 47 H 1.08999 * 109.58508 * 293.82185 * 30 20 19 48 48 H 1.08996 * 109.70532 * 173.46560 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6149 1.9787 1.3935 5 1 3.4843 1.4769 -0.8140 6 1 1.3940 2.6837 -0.5795 7 6 2.0103 -1.2022 -0.0005 8 1 1.4849 -2.1290 -0.1777 9 7 3.3612 -1.2129 0.2236 10 6 4.3486 -2.0186 -0.5175 11 6 5.6874 -1.2529 -0.3503 12 6 5.5708 -0.7420 1.1101 13 6 4.0662 -0.4277 1.2474 14 1 3.8931 0.6358 1.0832 15 6 3.5730 -0.8261 2.6398 16 1 4.1732 -0.3210 3.3966 17 6 2.1054 -0.4216 2.7970 18 6 1.6206 -0.7900 4.2010 19 6 1.7273 -2.3061 4.3923 20 7 3.1055 -2.7237 4.1010 21 6 3.8093 -3.4429 4.9977 22 8 4.9856 -3.6775 4.7999 23 6 3.1511 -3.9459 6.2209 24 6 3.8922 -4.1614 7.3908 25 6 3.2307 -4.6331 8.5081 26 6 1.8666 -4.8766 8.4368 27 9 1.2156 -5.3385 9.5269 28 7 1.1946 -4.6647 7.3189 29 6 1.7815 -4.2108 6.2310 30 6 3.7019 -2.3427 2.8134 31 1 -0.4850 0.8400 0.0004 32 1 4.4237 -3.0170 -0.0868 33 1 4.0754 -2.0785 -1.5709 34 1 5.7555 -0.4207 -1.0511 35 1 6.5376 -1.9257 -0.4622 36 1 6.1675 0.1591 1.2522 37 1 5.8686 -1.5182 1.8150 38 1 2.0074 0.6539 2.6494 39 1 1.5028 -0.9460 2.0554 40 1 0.5822 -0.4804 4.3202 41 1 2.2382 -0.2852 4.9438 42 1 1.0413 -2.8096 3.7111 43 1 1.4766 -2.5653 5.4209 44 1 4.9536 -3.9637 7.4182 45 1 3.7697 -4.8112 9.4269 46 1 1.1979 -4.0452 5.3374 47 1 3.1769 -2.8491 2.0035 48 1 4.7548 -2.6240 2.7985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963270321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:53 Heat of formation + Delta-G solvation = -4.903316 kcal Electronic energy + Delta-G solvation = -32137.948075 eV Core-core repulsion = 27915.428366 eV Total energy + Delta-G solvation = -4222.519709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.19427 -42.13019 -40.75740 -39.66294 -37.84801 -34.80389 -34.27499 -33.90910 -32.68758 -31.88343 -31.72609 -28.63040 -27.11448 -26.27748 -25.26943 -24.79336 -23.98789 -22.20894 -21.62243 -21.30309 -20.43257 -19.24990 -19.04375 -18.50643 -17.95363 -17.66226 -17.29629 -17.06814 -16.39742 -16.19537 -15.91042 -15.41903 -15.33497 -15.22329 -15.02238 -14.95718 -14.68229 -14.40350 -14.29538 -14.19092 -13.97031 -13.89933 -13.58024 -13.46640 -13.11397 -12.85862 -12.76736 -12.43492 -12.17510 -12.12505 -11.89714 -11.81219 -11.72533 -11.53369 -11.33152 -11.24626 -11.01794 -10.85249 -10.78158 -10.35356 -10.16183 -9.65590 -8.54029 -8.12669 -5.56178 -0.66332 -0.09211 1.30583 1.40721 1.48376 1.54608 1.84441 2.32606 2.44061 2.45231 3.16102 3.18732 3.34377 3.41810 3.57903 3.69996 3.78649 3.88803 4.04193 4.05887 4.13879 4.14534 4.22028 4.25950 4.40305 4.44337 4.47243 4.63458 4.67799 4.69386 4.74349 4.80558 4.83985 4.89904 5.01883 5.04282 5.09677 5.17243 5.18917 5.25839 5.28681 5.34010 5.40812 5.50020 5.53212 5.87406 6.07034 6.26835 6.31621 6.33876 6.93829 6.95803 7.60860 8.32434 9.05317 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.003353 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.892437 B = 8349.366114 C = 9325.076996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.928 3.072 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.320 1.320 7 C -0.224 4.224 8 H 0.047 0.953 9 N -0.614 5.614 10 C 0.122 3.878 11 C -0.125 4.125 12 C -0.125 4.125 13 C 0.141 3.859 14 H 0.016 0.984 15 C -0.091 4.091 16 H 0.061 0.939 17 C -0.135 4.135 18 C -0.126 4.126 19 C 0.091 3.909 20 N -0.597 5.597 21 C 0.565 3.435 22 O -0.569 6.569 23 C -0.201 4.201 24 C 0.012 3.988 25 C -0.179 4.179 26 C 0.314 3.686 27 F -0.111 7.111 28 N -0.537 5.537 29 C 0.160 3.840 30 C 0.141 3.859 31 H 0.261 0.739 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.115 0.885 44 H 0.172 0.828 45 H 0.192 0.808 46 H 0.193 0.807 47 H 0.067 0.933 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.972 -6.226 15.671 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.182 4.182 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.249 1.249 7 C -0.354 4.354 8 H 0.065 0.935 9 N -0.341 5.341 10 C -0.003 4.003 11 C -0.163 4.163 12 C -0.163 4.163 13 C 0.035 3.965 14 H 0.034 0.966 15 C -0.112 4.112 16 H 0.080 0.920 17 C -0.172 4.172 18 C -0.164 4.164 19 C -0.031 4.031 20 N -0.327 5.327 21 C 0.353 3.647 22 O -0.449 6.449 23 C -0.207 4.207 24 C -0.014 4.014 25 C -0.199 4.199 26 C 0.161 3.839 27 F -0.090 7.090 28 N -0.252 5.252 29 C 0.003 3.997 30 C 0.019 3.981 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.132 0.868 44 H 0.189 0.811 45 H 0.209 0.791 46 H 0.210 0.790 47 H 0.085 0.915 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.435 -6.460 15.568 18.848 hybrid contribution 0.292 1.369 -0.302 1.432 sum 8.727 -5.091 15.267 18.308 Atomic orbital electron populations 1.69851 1.06922 1.26995 1.54675 1.25791 0.95175 0.99507 0.97736 0.86305 0.78073 0.81439 0.78176 1.19194 1.20067 1.24916 1.18097 0.81471 0.91843 1.43954 0.93531 1.44739 1.02414 1.51462 1.35442 1.21942 0.88875 0.94187 0.95267 1.22747 0.97601 1.00048 0.95935 1.22665 0.93890 1.01926 0.97830 1.21367 0.92605 0.93960 0.88592 0.96641 1.21654 0.96855 0.95478 0.97188 0.92023 1.21997 0.97009 1.00117 0.98108 1.21867 1.02048 0.95361 0.97126 1.22552 0.81865 0.95830 1.02810 1.48113 1.15242 1.51966 1.17377 1.18182 0.85644 0.78065 0.82762 1.90749 1.16376 1.60106 1.77693 1.20939 0.95849 1.07749 0.96126 1.21818 1.01728 0.88909 0.88974 1.22083 0.92202 1.03131 1.02523 1.18732 0.88487 0.93797 0.82896 1.91647 1.82503 1.85213 1.49595 1.67085 1.41795 1.16311 0.99965 1.23455 0.91106 0.89627 0.95533 1.21451 0.98891 0.94722 0.83030 0.92939 0.94715 0.94282 0.92273 0.88557 0.90288 0.89909 0.95051 0.88573 0.90255 0.91745 0.90201 0.86780 0.81077 0.79127 0.79040 0.91470 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.95 13.97 21.65 0.30 -53.65 16 2 C 0.02 0.85 3.70 84.86 0.31 1.17 16 3 Si 0.93 44.85 23.28 68.60 1.60 46.45 16 4 H -0.27 -12.17 5.65 99.48 0.56 -11.61 16 5 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.32 -16.03 7.11 99.48 0.71 -15.33 16 7 C -0.22 -11.54 8.14 84.03 0.68 -10.86 16 8 H 0.05 2.69 8.06 -2.91 -0.02 2.67 16 9 N -0.61 -26.51 1.52 -667.83 -1.02 -27.52 16 10 C 0.12 4.43 7.24 86.93 0.63 5.06 16 11 C -0.13 -3.70 7.10 32.06 0.23 -3.47 16 12 C -0.13 -3.82 6.30 31.78 0.20 -3.62 16 13 C 0.14 5.42 2.11 45.34 0.10 5.52 16 14 H 0.02 0.70 3.53 -2.39 -0.01 0.69 16 15 C -0.09 -3.25 2.15 -10.72 -0.02 -3.28 16 16 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 17 C -0.14 -5.25 3.64 30.62 0.11 -5.13 16 18 C -0.13 -3.76 6.08 30.67 0.19 -3.57 16 19 C 0.09 2.37 4.70 86.36 0.41 2.78 16 20 N -0.60 -17.42 2.97 -822.44 -2.44 -19.86 16 21 C 0.56 15.90 7.48 86.75 0.65 16.54 16 22 O -0.57 -19.05 16.16 -3.92 -0.06 -19.11 16 23 C -0.20 -4.41 5.51 -20.00 -0.11 -4.52 16 24 C 0.01 0.19 9.72 22.71 0.22 0.41 16 25 C -0.18 -2.45 10.07 22.37 0.23 -2.23 16 26 C 0.31 6.03 8.41 84.77 0.71 6.74 16 27 F -0.11 -2.15 17.29 44.97 0.78 -1.37 16 28 N -0.54 -12.17 10.36 -195.73 -2.03 -14.20 16 29 C 0.16 3.39 8.62 85.02 0.73 4.12 16 30 C 0.14 4.74 5.29 86.36 0.46 5.20 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.78 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 2.35 6.11 -2.39 -0.01 2.34 16 38 H 0.03 1.33 5.63 -2.39 -0.01 1.32 16 39 H 0.10 4.46 4.59 -2.39 -0.01 4.45 16 40 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.08 2.15 8.00 -2.39 -0.02 2.13 16 43 H 0.11 2.39 4.07 -2.39 -0.01 2.38 16 44 H 0.17 2.37 7.96 -2.91 -0.02 2.35 16 45 H 0.19 1.21 8.06 -2.91 -0.02 1.18 16 46 H 0.19 3.76 5.25 -2.91 -0.02 3.74 16 47 H 0.07 2.58 7.21 -2.39 -0.02 2.57 16 48 H 0.08 2.82 5.37 -2.39 -0.01 2.80 16 Total: -1.00 -64.28 358.93 3.70 -60.57 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.86 Total: 17.83 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 5.72 Total: 10.87 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -5.19 Total: -115.23 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.06 Total: -19.11 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.78 Total: -1.37 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.60 Total: 46.45 kcal Total: -64.28 3.70 -60.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963270321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.670 kcal (2) G-P(sol) polarization free energy of solvation -64.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds