Wall clock time and date at job start Wed Apr 1 2020 04:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99642 * 2 1 4 4 H 1.48502 * 109.47307 * 267.13203 * 3 2 1 5 5 H 1.48506 * 109.47581 * 27.13664 * 3 2 1 6 6 H 1.48503 * 109.47004 * 147.13604 * 3 2 1 7 7 C 1.38809 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00054 * 348.94937 * 7 2 1 9 9 N 1.36933 * 119.99867 * 168.95075 * 7 2 1 10 10 C 1.47425 * 125.65046 * 138.91079 * 9 7 2 11 11 C 1.54905 * 104.83260 * 204.16065 * 10 9 7 12 12 C 1.55148 * 101.58451 * 322.98801 * 11 10 9 13 13 C 1.47024 * 125.64969 * 318.94801 * 9 7 2 14 14 H 1.09001 * 109.87956 * 59.33600 * 13 9 7 15 15 C 1.53008 * 109.88078 * 298.32728 * 13 9 7 16 16 H 1.09003 * 109.52104 * 186.18655 * 15 13 9 17 17 C 1.53039 * 109.49791 * 66.10814 * 15 13 9 18 18 C 1.53039 * 109.53532 * 178.68522 * 17 15 13 19 19 C 1.53187 * 109.31676 * 61.36385 * 18 17 15 20 20 N 1.46926 * 108.77201 * 305.36156 * 19 18 17 21 21 C 1.34773 * 120.63328 * 233.62799 * 20 19 18 22 22 O 1.21554 * 120.00271 * 175.08654 * 21 20 19 23 23 C 1.47848 * 119.99915 * 355.09458 * 21 20 19 24 24 C 1.39563 * 120.54741 * 145.25930 * 23 21 20 25 25 N 1.31652 * 120.62075 * 180.02562 * 24 23 21 26 26 C 1.31941 * 121.90848 * 359.97110 * 25 24 23 27 27 C 1.38529 * 121.04722 * 0.02698 * 26 25 24 28 28 F 1.35099 * 120.37929 * 179.97438 * 27 26 25 29 29 C 1.38621 * 119.25066 * 359.70034 * 27 26 25 30 30 C 1.46926 * 118.74095 * 53.61284 * 20 19 18 31 31 H 0.97006 * 120.00112 * 0.02562 * 1 2 3 32 32 H 1.08996 * 110.36556 * 323.00191 * 10 9 7 33 33 H 1.09004 * 110.36741 * 85.20979 * 10 9 7 34 34 H 1.08997 * 111.00332 * 81.06785 * 11 10 9 35 35 H 1.09002 * 111.00178 * 204.91367 * 11 10 9 36 36 H 1.09001 * 110.72344 * 277.14142 * 12 11 10 37 37 H 1.08998 * 110.72500 * 153.86451 * 12 11 10 38 38 H 1.08999 * 109.46164 * 58.65964 * 17 15 13 39 39 H 1.09001 * 109.45474 * 298.70128 * 17 15 13 40 40 H 1.09008 * 109.49455 * 181.31787 * 18 17 15 41 41 H 1.08998 * 109.49823 * 301.40537 * 18 17 15 42 42 H 1.08992 * 109.59217 * 65.14984 * 19 18 17 43 43 H 1.09005 * 109.58695 * 185.58004 * 19 18 17 44 44 H 1.07999 * 119.68718 * 359.97438 * 24 23 21 45 45 H 1.08003 * 119.47751 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.86673 * 180.29169 * 29 27 26 47 47 H 1.09003 * 109.58621 * 66.17226 * 30 20 19 48 48 H 1.08992 * 109.58891 * 186.59981 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5582 2.0115 -1.3983 5 1 1.4185 2.6695 0.6386 6 1 3.5161 1.4585 0.7598 7 6 2.0103 -1.2021 -0.0005 8 1 1.4853 -2.1288 0.1783 9 7 3.3606 -1.2129 -0.2278 10 6 4.3458 -2.0433 0.4884 11 6 5.6873 -1.2830 0.3409 12 6 5.5713 -0.7236 -1.1016 13 6 4.0680 -0.3977 -1.2261 14 1 3.8981 0.6606 -1.0282 15 6 3.5737 -0.7502 -2.6306 16 1 4.1763 -0.2246 -3.3714 17 6 2.1082 -0.3338 -2.7757 18 6 1.6224 -0.6560 -4.1907 19 6 1.7219 -2.1660 -4.4291 20 7 3.0980 -2.5990 -4.1504 21 6 3.7991 -3.2926 -5.0690 22 8 4.9650 -3.5677 -4.8631 23 6 3.1500 -3.7186 -6.3272 24 6 3.8732 -3.7588 -7.5201 25 7 3.2966 -4.1375 -8.6414 26 6 2.0265 -4.4918 -8.6874 27 6 1.2395 -4.4794 -7.5474 28 9 -0.0597 -4.8443 -7.6101 29 6 1.8018 -4.0938 -6.3405 30 6 3.6955 -2.2612 -2.8512 31 1 -0.4850 0.8401 -0.0004 32 1 4.0738 -2.1323 1.5402 33 1 4.4147 -3.0301 0.0305 34 1 5.7605 -0.4749 1.0687 35 1 6.5340 -1.9638 0.4290 36 1 5.8643 -1.4774 -1.8323 37 1 6.1721 0.1788 -1.2148 38 1 2.0153 0.7371 -2.5949 39 1 1.5027 -0.8782 -2.0511 40 1 0.5857 -0.3379 -4.3007 41 1 2.2433 -0.1314 -4.9169 42 1 1.0332 -2.6871 -3.7643 43 1 1.4716 -2.3895 -5.4662 44 1 4.9155 -3.4759 -7.5236 45 1 1.5932 -4.7955 -9.6290 46 1 1.2136 -4.0790 -5.4348 47 1 3.1675 -2.7901 -2.0577 48 1 4.7471 -2.5476 -2.8472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963276735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:34 Heat of formation + Delta-G solvation = 2.159431 kcal Electronic energy + Delta-G solvation = -32301.540245 eV Core-core repulsion = 28079.326800 eV Total energy + Delta-G solvation = -4222.213445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.30516 -41.01700 -39.61268 -38.37560 -36.51371 -33.65925 -32.90580 -32.05250 -31.30327 -30.96907 -30.01362 -27.31553 -26.02592 -24.58719 -24.25600 -23.73070 -22.69923 -20.87227 -20.22204 -19.89106 -19.10025 -18.00756 -17.42426 -17.34332 -16.73529 -16.50836 -16.11327 -16.02263 -15.47311 -14.96176 -14.80388 -14.37452 -14.05504 -13.79089 -13.69475 -13.52846 -13.47426 -13.35837 -13.24434 -12.78551 -12.65432 -12.55433 -12.08039 -11.96605 -11.63243 -11.48953 -11.17757 -10.92236 -10.75373 -10.50613 -10.48043 -10.43122 -10.26474 -10.18793 -10.02963 -9.85164 -9.66022 -9.47916 -9.36707 -9.29480 -8.55520 -8.25072 -6.78275 -6.10137 -3.56828 0.26166 0.60459 2.60245 2.97921 3.22793 3.32287 3.39145 3.43518 3.63126 4.01895 4.21162 4.32371 4.39992 4.41449 4.75653 4.93263 4.99453 5.14146 5.21290 5.28174 5.32268 5.34773 5.39397 5.53805 5.55710 5.57212 5.65881 5.69839 5.81871 5.94408 6.09306 6.13278 6.14875 6.18966 6.22976 6.29531 6.36688 6.43783 6.54932 6.64357 6.68504 6.76676 6.85103 6.85964 6.95980 7.34669 7.49822 7.53828 7.93241 8.11355 8.25030 8.77879 9.55352 10.20094 11.04158 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.003627 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.357123 B = 7718.991881 C = 8738.812521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.048 3.952 3 Si 0.885 3.115 4 H -0.276 1.276 5 H -0.306 1.306 6 H -0.273 1.273 7 C -0.248 4.248 8 H 0.082 0.918 9 N -0.603 5.603 10 C 0.128 3.872 11 C -0.136 4.136 12 C -0.132 4.132 13 C 0.150 3.850 14 H 0.037 0.963 15 C -0.096 4.096 16 H 0.051 0.949 17 C -0.142 4.142 18 C -0.131 4.131 19 C 0.094 3.906 20 N -0.592 5.592 21 C 0.558 3.442 22 O -0.536 6.536 23 C -0.145 4.145 24 C 0.142 3.858 25 N -0.460 5.460 26 C 0.091 3.909 27 C 0.043 3.957 28 F -0.125 7.125 29 C -0.082 4.082 30 C 0.126 3.874 31 H 0.265 0.735 32 H 0.048 0.952 33 H 0.026 0.974 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.131 0.869 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.174 0.826 45 H 0.172 0.828 46 H 0.162 0.838 47 H 0.091 0.909 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 -5.519 -12.895 14.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.154 4.154 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.234 1.234 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.329 5.329 10 C 0.003 3.997 11 C -0.174 4.174 12 C -0.170 4.170 13 C 0.044 3.956 14 H 0.055 0.945 15 C -0.117 4.117 16 H 0.070 0.930 17 C -0.179 4.179 18 C -0.169 4.169 19 C -0.028 4.028 20 N -0.323 5.323 21 C 0.344 3.656 22 O -0.414 6.414 23 C -0.151 4.151 24 C -0.016 4.016 25 N -0.167 5.167 26 C -0.068 4.068 27 C 0.021 3.979 28 F -0.104 7.104 29 C -0.109 4.109 30 C 0.006 3.994 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.149 0.851 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.191 0.809 45 H 0.189 0.811 46 H 0.180 0.820 47 H 0.109 0.891 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.937 -5.600 -13.492 15.420 hybrid contribution -0.504 1.196 0.714 1.481 sum 4.432 -4.404 -12.778 14.224 Atomic orbital electron populations 1.69758 1.05661 1.26863 1.52127 1.25472 0.95045 0.97655 0.97186 0.87035 0.79495 0.84077 0.77708 1.20364 1.23446 1.19856 1.18389 0.79879 0.93425 1.45854 0.90059 1.44686 1.03186 1.48353 1.36702 1.21763 0.88059 0.93622 0.96247 1.22752 0.98243 0.99901 0.96531 1.22668 0.96324 1.00571 0.97459 1.21241 0.90446 0.95339 0.88573 0.94543 1.21737 0.97580 0.94674 0.97704 0.93028 1.22261 0.96686 1.02664 0.96271 1.21920 1.01499 0.94064 0.99395 1.22285 0.82609 0.96955 1.00982 1.48149 1.14897 1.52796 1.16443 1.17924 0.85958 0.79025 0.82649 1.90786 1.15613 1.56877 1.78166 1.21015 0.93919 1.03406 0.96717 1.23038 1.00450 0.92214 0.85849 1.67837 1.10151 1.10281 1.28400 1.23134 0.89737 0.96127 0.97778 1.18650 0.80406 1.03151 0.95665 1.91562 1.32711 1.89108 1.96983 1.22183 0.94752 0.95364 0.98613 1.21817 0.99195 0.96374 0.82046 0.92505 0.93387 0.95631 0.91867 0.91884 0.91034 0.92108 0.92470 0.85104 0.90990 0.92988 0.90187 0.90128 0.80893 0.81120 0.82021 0.89084 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 13.97 55.49 0.78 -24.10 16 2 C 0.05 1.24 3.63 -17.43 -0.06 1.18 16 3 Si 0.88 21.27 23.02 -169.99 -3.91 17.36 16 4 H -0.28 -6.37 5.60 56.52 0.32 -6.06 16 5 H -0.31 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.27 -6.62 7.03 56.52 0.40 -6.22 16 7 C -0.25 -6.18 8.25 -15.06 -0.12 -6.30 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 9 N -0.60 -13.00 1.56 -162.57 -0.25 -13.26 16 10 C 0.13 2.39 7.23 -2.53 -0.02 2.37 16 11 C -0.14 -2.20 7.08 -24.59 -0.17 -2.37 16 12 C -0.13 -2.20 6.30 -24.90 -0.16 -2.36 16 13 C 0.15 2.98 2.13 -66.95 -0.14 2.84 16 14 H 0.04 0.81 3.44 -51.93 -0.18 0.64 16 15 C -0.10 -1.77 2.14 -90.50 -0.19 -1.96 16 16 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 17 C -0.14 -2.76 3.60 -26.69 -0.10 -2.86 16 18 C -0.13 -2.03 6.08 -26.61 -0.16 -2.20 16 19 C 0.09 1.30 4.82 -3.71 -0.02 1.28 16 20 N -0.59 -9.13 2.97 -173.89 -0.52 -9.65 16 21 C 0.56 8.48 7.41 -12.33 -0.09 8.39 16 22 O -0.54 -9.60 16.25 5.32 0.09 -9.51 16 23 C -0.15 -1.79 5.33 -104.83 -0.56 -2.35 16 24 C 0.14 1.64 10.78 -17.13 -0.18 1.45 16 25 N -0.46 -5.04 10.34 -12.86 -0.13 -5.17 16 26 C 0.09 0.84 11.16 -17.40 -0.19 0.65 16 27 C 0.04 0.42 7.33 -39.33 -0.29 0.14 16 28 F -0.13 -1.26 17.28 2.25 0.04 -1.22 16 29 C -0.08 -0.89 7.47 -38.80 -0.29 -1.18 16 30 C 0.13 2.20 5.29 -3.71 -0.02 2.18 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.13 6.10 -51.93 -0.32 0.82 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.22 5.28 -51.93 -0.27 0.94 16 39 H 0.13 2.96 4.55 -51.93 -0.24 2.72 16 40 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 43 H 0.08 0.93 4.35 -51.93 -0.23 0.70 16 44 H 0.17 1.83 8.00 -52.49 -0.42 1.41 16 45 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 46 H 0.16 1.63 6.06 -52.49 -0.32 1.31 16 47 H 0.09 1.75 7.21 -51.93 -0.37 1.38 16 48 H 0.08 1.49 5.35 -51.93 -0.28 1.21 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -28.36 359.16 -7.77 -36.14 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.49 Total: 5.10 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -2.78 Total: -1.10 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.13 Total: -52.18 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -3.91 Total: 17.36 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.36 -7.77 -36.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963276735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.296 kcal (2) G-P(sol) polarization free energy of solvation -28.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds