Wall clock time and date at job start Wed Apr 1 2020 04:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99642 * 2 1 4 4 H 1.48502 * 109.47307 * 267.13203 * 3 2 1 5 5 H 1.48506 * 109.47581 * 27.13664 * 3 2 1 6 6 H 1.48503 * 109.47004 * 147.13604 * 3 2 1 7 7 C 1.38809 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00054 * 348.94937 * 7 2 1 9 9 N 1.36933 * 119.99867 * 168.95075 * 7 2 1 10 10 C 1.47425 * 125.65046 * 138.91079 * 9 7 2 11 11 C 1.54905 * 104.83260 * 204.16065 * 10 9 7 12 12 C 1.55148 * 101.58451 * 322.98801 * 11 10 9 13 13 C 1.47024 * 125.64969 * 318.94801 * 9 7 2 14 14 H 1.09001 * 109.87956 * 59.33600 * 13 9 7 15 15 C 1.53008 * 109.88078 * 298.32728 * 13 9 7 16 16 H 1.09003 * 109.52104 * 186.18655 * 15 13 9 17 17 C 1.53039 * 109.49791 * 66.10814 * 15 13 9 18 18 C 1.53039 * 109.53532 * 178.68522 * 17 15 13 19 19 C 1.53187 * 109.31676 * 61.36385 * 18 17 15 20 20 N 1.46926 * 108.77201 * 305.36156 * 19 18 17 21 21 C 1.34773 * 120.63328 * 233.62799 * 20 19 18 22 22 O 1.21554 * 120.00271 * 175.08654 * 21 20 19 23 23 C 1.47848 * 119.99915 * 355.09458 * 21 20 19 24 24 C 1.39563 * 120.54741 * 145.25930 * 23 21 20 25 25 N 1.31652 * 120.62075 * 180.02562 * 24 23 21 26 26 C 1.31941 * 121.90848 * 359.97110 * 25 24 23 27 27 C 1.38529 * 121.04722 * 0.02698 * 26 25 24 28 28 F 1.35099 * 120.37929 * 179.97438 * 27 26 25 29 29 C 1.38621 * 119.25066 * 359.70034 * 27 26 25 30 30 C 1.46926 * 118.74095 * 53.61284 * 20 19 18 31 31 H 0.97006 * 120.00112 * 0.02562 * 1 2 3 32 32 H 1.08996 * 110.36556 * 323.00191 * 10 9 7 33 33 H 1.09004 * 110.36741 * 85.20979 * 10 9 7 34 34 H 1.08997 * 111.00332 * 81.06785 * 11 10 9 35 35 H 1.09002 * 111.00178 * 204.91367 * 11 10 9 36 36 H 1.09001 * 110.72344 * 277.14142 * 12 11 10 37 37 H 1.08998 * 110.72500 * 153.86451 * 12 11 10 38 38 H 1.08999 * 109.46164 * 58.65964 * 17 15 13 39 39 H 1.09001 * 109.45474 * 298.70128 * 17 15 13 40 40 H 1.09008 * 109.49455 * 181.31787 * 18 17 15 41 41 H 1.08998 * 109.49823 * 301.40537 * 18 17 15 42 42 H 1.08992 * 109.59217 * 65.14984 * 19 18 17 43 43 H 1.09005 * 109.58695 * 185.58004 * 19 18 17 44 44 H 1.07999 * 119.68718 * 359.97438 * 24 23 21 45 45 H 1.08003 * 119.47751 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.86673 * 180.29169 * 29 27 26 47 47 H 1.09003 * 109.58621 * 66.17226 * 30 20 19 48 48 H 1.08992 * 109.58891 * 186.59981 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5582 2.0115 -1.3983 5 1 1.4185 2.6695 0.6386 6 1 3.5161 1.4585 0.7598 7 6 2.0103 -1.2021 -0.0005 8 1 1.4853 -2.1288 0.1783 9 7 3.3606 -1.2129 -0.2278 10 6 4.3458 -2.0433 0.4884 11 6 5.6873 -1.2830 0.3409 12 6 5.5713 -0.7236 -1.1016 13 6 4.0680 -0.3977 -1.2261 14 1 3.8981 0.6606 -1.0282 15 6 3.5737 -0.7502 -2.6306 16 1 4.1763 -0.2246 -3.3714 17 6 2.1082 -0.3338 -2.7757 18 6 1.6224 -0.6560 -4.1907 19 6 1.7219 -2.1660 -4.4291 20 7 3.0980 -2.5990 -4.1504 21 6 3.7991 -3.2926 -5.0690 22 8 4.9650 -3.5677 -4.8631 23 6 3.1500 -3.7186 -6.3272 24 6 3.8732 -3.7588 -7.5201 25 7 3.2966 -4.1375 -8.6414 26 6 2.0265 -4.4918 -8.6874 27 6 1.2395 -4.4794 -7.5474 28 9 -0.0597 -4.8443 -7.6101 29 6 1.8018 -4.0938 -6.3405 30 6 3.6955 -2.2612 -2.8512 31 1 -0.4850 0.8401 -0.0004 32 1 4.0738 -2.1323 1.5402 33 1 4.4147 -3.0301 0.0305 34 1 5.7605 -0.4749 1.0687 35 1 6.5340 -1.9638 0.4290 36 1 5.8643 -1.4774 -1.8323 37 1 6.1721 0.1788 -1.2148 38 1 2.0153 0.7371 -2.5949 39 1 1.5027 -0.8782 -2.0511 40 1 0.5857 -0.3379 -4.3007 41 1 2.2433 -0.1314 -4.9169 42 1 1.0332 -2.6871 -3.7643 43 1 1.4716 -2.3895 -5.4662 44 1 4.9155 -3.4759 -7.5236 45 1 1.5932 -4.7955 -9.6290 46 1 1.2136 -4.0790 -5.4348 47 1 3.1675 -2.7901 -2.0577 48 1 4.7471 -2.5476 -2.8472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963276735.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:33 Heat of formation + Delta-G solvation = -14.002892 kcal Electronic energy + Delta-G solvation = -32302.241096 eV Core-core repulsion = 28079.326800 eV Total energy + Delta-G solvation = -4222.914296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.09059 -42.08248 -40.80653 -39.71630 -37.85633 -34.91133 -34.60565 -33.31569 -32.36788 -32.08534 -31.74618 -28.73159 -27.20883 -26.30699 -25.24096 -24.81880 -24.00481 -22.24009 -21.64993 -21.35668 -20.49328 -19.02315 -18.51923 -18.30959 -18.19499 -17.68889 -17.48320 -16.94388 -16.88505 -16.28571 -16.12595 -15.55444 -15.28999 -15.19100 -15.01102 -14.91202 -14.74283 -14.57475 -14.41648 -14.19340 -13.98212 -13.59791 -13.52730 -13.45861 -13.16134 -12.90634 -12.85424 -12.45690 -12.22209 -12.12559 -11.94212 -11.83800 -11.74025 -11.57004 -11.47016 -11.19753 -10.96826 -10.86244 -10.60053 -10.36496 -10.18463 -9.69544 -8.59238 -8.14273 -5.55737 -0.59985 -0.22911 1.29020 1.39892 1.47341 1.50269 1.80627 2.42466 2.43620 2.77970 3.14420 3.15014 3.32133 3.39389 3.51483 3.55944 3.73803 3.83545 3.95011 4.02230 4.04324 4.11413 4.20074 4.24856 4.34591 4.41102 4.42119 4.58703 4.60894 4.65439 4.71094 4.73640 4.81057 4.86936 4.98321 5.02563 5.05796 5.14901 5.16686 5.22315 5.26124 5.35352 5.38309 5.47301 5.50769 5.84193 6.04510 6.23748 6.27005 6.55631 6.90509 6.91327 7.59483 8.30073 9.04076 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.003627 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.357123 B = 7718.991881 C = 8738.812521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.928 3.072 4 H -0.264 1.264 5 H -0.320 1.320 6 H -0.274 1.274 7 C -0.225 4.225 8 H 0.048 0.952 9 N -0.614 5.614 10 C 0.122 3.878 11 C -0.125 4.125 12 C -0.126 4.126 13 C 0.141 3.859 14 H 0.017 0.983 15 C -0.091 4.091 16 H 0.062 0.938 17 C -0.138 4.138 18 C -0.126 4.126 19 C 0.099 3.901 20 N -0.595 5.595 21 C 0.562 3.438 22 O -0.566 6.566 23 C -0.158 4.158 24 C 0.145 3.855 25 N -0.469 5.469 26 C 0.106 3.894 27 C 0.045 3.955 28 F -0.124 7.124 29 C -0.081 4.081 30 C 0.141 3.859 31 H 0.261 0.739 32 H 0.039 0.961 33 H 0.034 0.966 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.178 0.822 45 H 0.205 0.795 46 H 0.167 0.833 47 H 0.067 0.933 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.585 -6.088 -15.269 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.183 4.183 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.250 1.250 6 H -0.200 1.200 7 C -0.355 4.355 8 H 0.065 0.935 9 N -0.341 5.341 10 C -0.003 4.003 11 C -0.163 4.163 12 C -0.163 4.163 13 C 0.035 3.965 14 H 0.034 0.966 15 C -0.112 4.112 16 H 0.080 0.920 17 C -0.176 4.176 18 C -0.165 4.165 19 C -0.023 4.023 20 N -0.326 5.326 21 C 0.350 3.650 22 O -0.446 6.446 23 C -0.163 4.163 24 C -0.012 4.012 25 N -0.177 5.177 26 C -0.053 4.053 27 C 0.024 3.976 28 F -0.103 7.103 29 C -0.108 4.108 30 C 0.019 3.981 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.195 0.805 45 H 0.222 0.778 46 H 0.184 0.816 47 H 0.085 0.915 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.405 -6.180 -15.879 18.203 hybrid contribution -0.981 1.242 1.400 2.113 sum 5.424 -4.938 -14.479 16.230 Atomic orbital electron populations 1.69853 1.06892 1.26981 1.54834 1.25740 0.95195 0.99465 0.97861 0.86341 0.78097 0.81450 0.78061 1.19093 1.24988 1.19991 1.18117 0.81519 0.91933 1.43881 0.93489 1.44751 1.02503 1.48801 1.38041 1.21893 0.88926 0.93959 0.95484 1.22707 0.97535 0.99985 0.96055 1.22666 0.93847 1.01818 0.98000 1.21363 0.92655 0.93740 0.88697 0.96617 1.21669 0.96899 0.95463 0.97199 0.91965 1.22061 0.97053 1.00497 0.97946 1.21874 1.02037 0.95472 0.97071 1.22335 0.81739 0.95567 1.02625 1.48145 1.15435 1.53061 1.15910 1.18265 0.85538 0.78040 0.83130 1.90763 1.17009 1.57914 1.78913 1.20706 0.94551 1.05552 0.95541 1.23127 1.00698 0.91699 0.85720 1.67937 1.10951 1.10846 1.27922 1.23671 0.88949 0.93886 0.98789 1.18629 0.80467 1.03043 0.95494 1.91574 1.32660 1.89073 1.96950 1.22213 0.94198 0.95041 0.99340 1.21466 0.98880 0.95184 0.82598 0.92928 0.94240 0.94811 0.92195 0.88510 0.89928 0.90201 0.94770 0.88517 0.90257 0.91729 0.90701 0.87207 0.80480 0.77834 0.81606 0.91502 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.99 13.97 21.65 0.30 -53.69 16 2 C 0.02 0.81 3.63 84.86 0.31 1.12 16 3 Si 0.93 44.85 23.02 68.60 1.58 46.43 16 4 H -0.26 -12.10 5.60 99.48 0.56 -11.55 16 5 H -0.32 -16.07 7.11 99.48 0.71 -15.37 16 6 H -0.27 -13.13 7.03 99.48 0.70 -12.43 16 7 C -0.23 -11.65 8.25 84.03 0.69 -10.95 16 8 H 0.05 2.73 8.06 -2.91 -0.02 2.71 16 9 N -0.61 -26.71 1.56 -668.26 -1.04 -27.75 16 10 C 0.12 4.46 7.23 86.85 0.63 5.09 16 11 C -0.12 -3.71 7.08 31.98 0.23 -3.49 16 12 C -0.13 -3.86 6.30 31.78 0.20 -3.66 16 13 C 0.14 5.49 2.13 45.34 0.10 5.59 16 14 H 0.02 0.71 3.44 -2.39 -0.01 0.70 16 15 C -0.09 -3.31 2.14 -10.71 -0.02 -3.33 16 16 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 17 C -0.14 -5.42 3.60 30.62 0.11 -5.31 16 18 C -0.13 -3.82 6.08 30.67 0.19 -3.63 16 19 C 0.10 2.63 4.82 86.36 0.42 3.04 16 20 N -0.60 -17.78 2.97 -822.33 -2.44 -20.22 16 21 C 0.56 16.34 7.41 86.79 0.64 16.98 16 22 O -0.57 -19.64 16.25 -3.88 -0.06 -19.70 16 23 C -0.16 -3.59 5.33 -20.00 -0.11 -3.69 16 24 C 0.15 3.01 10.78 85.04 0.92 3.93 16 25 N -0.47 -8.92 10.34 -194.60 -2.01 -10.94 16 26 C 0.11 1.58 11.16 84.75 0.95 2.53 16 27 C 0.05 0.76 7.33 22.43 0.16 0.92 16 28 F -0.12 -2.14 17.28 44.97 0.78 -1.37 16 29 C -0.08 -1.57 7.47 22.78 0.17 -1.40 16 30 C 0.14 4.82 5.29 86.36 0.46 5.27 16 31 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.08 2.38 6.10 -2.39 -0.01 2.37 16 37 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.03 1.46 5.28 -2.39 -0.01 1.45 16 39 H 0.10 4.51 4.55 -2.39 -0.01 4.50 16 40 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 2.08 8.08 -2.39 -0.02 2.06 16 43 H 0.11 2.29 4.35 -2.38 -0.01 2.28 16 44 H 0.18 3.44 8.00 -2.91 -0.02 3.42 16 45 H 0.21 1.63 8.06 -2.91 -0.02 1.61 16 46 H 0.17 3.02 6.06 -2.91 -0.02 3.01 16 47 H 0.07 2.62 7.21 -2.39 -0.02 2.60 16 48 H 0.08 2.88 5.35 -2.39 -0.01 2.87 16 Total: -1.00 -63.17 359.16 3.98 -59.19 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.84 Total: 19.04 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 6.03 Total: 9.01 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -5.20 Total: -112.60 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.06 Total: -19.70 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.78 Total: -1.37 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.58 Total: 46.43 kcal Total: -63.17 3.98 -59.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963276735.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.192 kcal (2) G-P(sol) polarization free energy of solvation -63.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds