Wall clock time and date at job start Wed Apr 1 2020 04:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99688 * 2 1 4 4 H 1.48496 * 109.46790 * 236.65374 * 3 2 1 5 5 H 1.48500 * 109.46723 * 356.65398 * 3 2 1 6 6 H 1.48498 * 109.46955 * 116.65355 * 3 2 1 7 7 C 1.38804 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00354 * 6.18378 * 7 2 1 9 9 N 1.36944 * 120.00315 * 186.18040 * 7 2 1 10 10 C 1.47420 * 125.64609 * 40.38221 * 9 7 2 11 11 C 1.54907 * 104.93139 * 155.79706 * 10 9 7 12 12 C 1.55446 * 101.44937 * 37.00048 * 11 10 9 13 13 C 1.47020 * 125.65160 * 220.35728 * 9 7 2 14 14 H 1.09001 * 109.88166 * 300.49675 * 13 9 7 15 15 C 1.52999 * 109.88311 * 61.50224 * 13 9 7 16 16 H 1.09009 * 109.49098 * 53.57474 * 15 13 9 17 17 C 1.53040 * 109.50333 * 293.48329 * 15 13 9 18 18 C 1.53032 * 109.54110 * 178.67952 * 17 15 13 19 19 C 1.53190 * 109.31290 * 61.36425 * 18 17 15 20 20 N 1.46924 * 108.77524 * 305.36414 * 19 18 17 21 21 C 1.34777 * 120.63092 * 233.63074 * 20 19 18 22 22 O 1.21554 * 120.00109 * 181.41720 * 21 20 19 23 23 C 1.47847 * 120.00103 * 1.41111 * 21 20 19 24 24 C 1.39552 * 120.54667 * 327.84224 * 23 21 20 25 25 N 1.31657 * 120.62272 * 179.97438 * 24 23 21 26 26 C 1.31940 * 121.90769 * 0.02562 * 25 24 23 27 27 C 1.38541 * 121.04222 * 0.02562 * 26 25 24 28 28 F 1.35098 * 120.36950 * 179.97438 * 27 26 25 29 29 C 1.38607 * 119.25272 * 359.68532 * 27 26 25 30 30 C 1.46925 * 118.74004 * 53.61002 * 20 19 18 31 31 H 0.96998 * 120.00615 * 0.02562 * 1 2 3 32 32 H 1.09002 * 110.36433 * 274.69228 * 10 9 7 33 33 H 1.08999 * 110.36927 * 36.90024 * 10 9 7 34 34 H 1.08996 * 111.00623 * 155.13337 * 11 10 9 35 35 H 1.08997 * 111.00433 * 278.99009 * 11 10 9 36 36 H 1.08999 * 110.70897 * 206.14569 * 12 11 10 37 37 H 1.09005 * 110.70840 * 82.88908 * 12 11 10 38 38 H 1.09005 * 109.45677 * 298.70213 * 17 15 13 39 39 H 1.09006 * 109.46000 * 58.65886 * 17 15 13 40 40 H 1.09001 * 109.50317 * 301.41038 * 18 17 15 41 41 H 1.09001 * 109.52897 * 181.32874 * 18 17 15 42 42 H 1.09000 * 109.58935 * 185.57959 * 19 18 17 43 43 H 1.09002 * 109.58913 * 65.14818 * 19 18 17 44 44 H 1.08003 * 119.69214 * 359.97258 * 24 23 21 45 45 H 1.07997 * 119.47961 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.86784 * 180.31959 * 29 27 26 47 47 H 1.09001 * 109.59050 * 186.60407 * 30 20 19 48 48 H 1.08994 * 109.70756 * 66.24305 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1641 1.6617 -1.1696 5 1 1.2870 2.7453 -0.0817 6 1 3.0415 1.7325 1.2513 7 6 2.0103 -1.2020 0.0005 8 1 1.4751 -2.1348 -0.0998 9 7 3.3737 -1.2054 0.1282 10 6 4.1545 -0.3377 1.0287 11 6 5.4774 -1.1051 1.2746 12 6 5.7270 -1.7446 -0.1201 13 6 4.3013 -2.0753 -0.6096 14 1 4.0720 -3.1208 -0.4040 15 6 4.1870 -1.8033 -2.1109 16 1 4.3228 -0.7382 -2.2990 17 6 2.8052 -2.2377 -2.6050 18 6 2.6779 -1.9358 -4.0999 19 6 3.7382 -2.7299 -4.8692 20 7 5.0595 -2.4268 -4.3027 21 6 6.0645 -2.0012 -5.0936 22 8 7.1602 -1.7784 -4.6170 23 6 5.8341 -1.8056 -6.5408 24 6 4.9270 -2.6116 -7.2300 25 7 4.7204 -2.4383 -8.5187 26 6 5.3533 -1.5079 -9.2075 27 6 6.2703 -0.6672 -8.5979 28 9 6.9110 0.2806 -9.3164 29 6 6.5186 -0.8056 -7.2412 30 6 5.2644 -2.5959 -2.8577 31 1 -0.4851 0.8400 -0.0004 32 1 4.3553 0.6214 0.5513 33 1 3.6220 -0.1889 1.9681 34 1 6.2822 -0.4206 1.5424 35 1 5.3482 -1.8717 2.0386 36 1 6.3229 -2.6525 -0.0267 37 1 6.2092 -1.0326 -0.7899 38 1 2.6799 -3.3077 -2.4387 39 1 2.0359 -1.6928 -2.0577 40 1 2.8276 -0.8696 -4.2698 41 1 1.6853 -2.2236 -4.4465 42 1 3.7172 -2.4441 -5.9208 43 1 3.5360 -3.7968 -4.7742 44 1 4.3894 -3.3848 -6.7013 45 1 5.1539 -1.4004 -10.2635 46 1 7.2243 -0.1610 -6.7385 47 1 6.2503 -2.2216 -2.5821 48 1 5.1882 -3.6514 -2.5967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963276736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:37 Heat of formation + Delta-G solvation = 3.559646 kcal Electronic energy + Delta-G solvation = -31607.531848 eV Core-core repulsion = 27385.379121 eV Total energy + Delta-G solvation = -4222.152727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.38645 -41.22076 -39.58943 -38.33803 -36.76889 -33.41052 -32.80786 -32.75201 -31.69878 -30.92294 -30.00197 -27.23712 -26.14264 -24.67497 -24.25595 -23.87170 -22.66932 -21.29962 -20.43192 -19.58939 -19.14512 -18.30157 -17.68159 -17.51672 -16.95121 -16.32161 -16.09862 -15.87120 -15.47657 -15.34079 -14.93675 -14.47411 -14.10150 -14.07412 -13.75581 -13.61194 -13.46068 -13.37154 -13.10111 -12.85893 -12.69053 -12.61873 -12.45065 -12.06983 -11.59473 -11.21037 -11.03752 -10.98583 -10.88361 -10.69670 -10.58243 -10.35319 -10.33972 -10.26126 -10.04169 -9.89508 -9.80686 -9.66086 -9.51303 -9.29584 -8.69128 -8.44386 -6.79342 -6.03780 -3.53717 0.14301 0.53568 2.46346 2.76203 3.24472 3.31390 3.42338 3.43968 3.56157 3.87026 4.08041 4.26121 4.31595 4.47071 4.64132 4.81003 4.90658 5.04222 5.11647 5.16309 5.22562 5.28629 5.32918 5.42637 5.44184 5.53431 5.55650 5.65063 5.69895 5.79982 5.91210 6.03238 6.05230 6.08059 6.17437 6.20124 6.26768 6.33713 6.41042 6.51205 6.64640 6.72790 6.80328 6.80524 7.07048 7.23241 7.28308 7.36443 7.93009 7.96233 8.29522 8.78780 9.59539 10.21178 11.10853 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.003153 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.991012 B = 8879.615258 C = 9322.317125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.037 3.963 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.305 1.305 6 H -0.273 1.273 7 C -0.240 4.240 8 H 0.085 0.915 9 N -0.602 5.602 10 C 0.114 3.886 11 C -0.133 4.133 12 C -0.131 4.131 13 C 0.167 3.833 14 H 0.043 0.957 15 C -0.101 4.101 16 H 0.067 0.933 17 C -0.127 4.127 18 C -0.133 4.133 19 C 0.073 3.927 20 N -0.592 5.592 21 C 0.560 3.440 22 O -0.534 6.534 23 C -0.147 4.147 24 C 0.106 3.894 25 N -0.457 5.457 26 C 0.092 3.908 27 C 0.044 3.956 28 F -0.125 7.125 29 C -0.056 4.056 30 C 0.114 3.886 31 H 0.265 0.735 32 H 0.020 0.980 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.121 0.879 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.188 0.812 45 H 0.173 0.827 46 H 0.158 0.842 47 H 0.091 0.909 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.655 -5.309 -14.068 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.164 4.164 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.233 1.233 6 H -0.199 1.199 7 C -0.368 4.368 8 H 0.102 0.898 9 N -0.328 5.328 10 C -0.010 4.010 11 C -0.172 4.172 12 C -0.169 4.169 13 C 0.060 3.940 14 H 0.061 0.939 15 C -0.122 4.122 16 H 0.085 0.915 17 C -0.164 4.164 18 C -0.171 4.171 19 C -0.049 4.049 20 N -0.323 5.323 21 C 0.346 3.654 22 O -0.412 6.412 23 C -0.153 4.153 24 C -0.051 4.051 25 N -0.165 5.165 26 C -0.066 4.066 27 C 0.023 3.977 28 F -0.104 7.104 29 C -0.083 4.083 30 C -0.008 4.008 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.139 0.861 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.204 0.796 45 H 0.190 0.810 46 H 0.175 0.825 47 H 0.109 0.891 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.382 -5.603 -14.238 18.490 hybrid contribution 1.061 1.874 0.198 2.162 sum 11.443 -3.729 -14.040 18.492 Atomic orbital electron populations 1.69728 1.05698 1.26900 1.52775 1.25505 0.95142 0.97967 0.97818 0.86920 0.78419 0.83494 0.78994 1.20593 1.23333 1.19904 1.18399 0.78505 0.93471 1.46424 0.89789 1.44714 1.02171 1.43547 1.42334 1.22067 0.91319 0.93340 0.94316 1.22780 0.97938 0.99611 0.96861 1.22723 0.97019 1.00227 0.96980 1.21012 0.88867 0.95117 0.88977 0.93899 1.21951 0.94274 0.99573 0.96407 0.91478 1.21917 0.99403 1.01444 0.93646 1.21936 0.97563 1.00041 0.97536 1.22768 0.82561 1.00552 0.98983 1.48037 1.10846 1.64523 1.08939 1.17915 0.84570 0.77766 0.85119 1.90794 1.23720 1.51563 1.75148 1.20939 0.99629 0.98861 0.95825 1.23763 0.93093 0.98277 0.89941 1.67849 1.23084 1.17671 1.07853 1.23152 0.91610 0.90424 1.01430 1.18642 0.97236 0.91480 0.90356 1.91556 1.79908 1.61699 1.77234 1.21735 0.97608 0.96860 0.92139 1.21938 1.01148 1.00497 0.77200 0.92525 0.96271 0.92837 0.92067 0.91469 0.91707 0.91685 0.93044 0.86109 0.91991 0.90746 0.88497 0.90397 0.79561 0.80985 0.82469 0.89107 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.43 13.97 55.49 0.78 -25.65 16 2 C 0.04 1.00 5.50 -17.43 -0.10 0.90 16 3 Si 0.89 22.03 25.00 -169.99 -4.25 17.78 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.31 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -6.47 5.78 56.52 0.33 -6.14 16 7 C -0.24 -6.18 7.37 -15.06 -0.11 -6.29 16 8 H 0.08 2.33 7.92 -52.48 -0.42 1.92 16 9 N -0.60 -13.39 2.68 -162.58 -0.44 -13.82 16 10 C 0.11 2.38 4.66 -2.53 -0.01 2.37 16 11 C -0.13 -2.19 7.11 -24.43 -0.17 -2.36 16 12 C -0.13 -2.07 5.44 -24.74 -0.13 -2.20 16 13 C 0.17 3.04 2.81 -66.96 -0.19 2.85 16 14 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 15 C -0.10 -1.72 1.97 -90.50 -0.18 -1.90 16 16 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 17 C -0.13 -2.17 4.82 -26.69 -0.13 -2.30 16 18 C -0.13 -1.85 6.08 -26.62 -0.16 -2.01 16 19 C 0.07 0.81 4.91 -3.71 -0.02 0.79 16 20 N -0.59 -7.86 2.97 -173.88 -0.52 -8.38 16 21 C 0.56 7.85 7.47 -12.33 -0.09 7.76 16 22 O -0.53 -9.11 16.24 5.32 0.09 -9.03 16 23 C -0.15 -1.70 5.54 -104.83 -0.58 -2.28 16 24 C 0.11 1.05 8.64 -17.14 -0.15 0.90 16 25 N -0.46 -4.53 10.34 -13.32 -0.14 -4.66 16 26 C 0.09 0.80 11.16 -17.39 -0.19 0.60 16 27 C 0.04 0.43 7.33 -39.33 -0.29 0.14 16 28 F -0.13 -1.22 17.28 2.25 0.04 -1.19 16 29 C -0.06 -0.61 9.73 -38.80 -0.38 -0.99 16 30 C 0.11 1.64 5.28 -3.71 -0.02 1.62 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.02 0.43 5.13 -51.93 -0.27 0.17 16 33 H 0.05 1.17 7.72 -51.93 -0.40 0.77 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.03 7.33 -51.93 -0.38 0.65 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.12 2.62 5.01 -51.93 -0.26 2.36 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.10 0.92 3.55 -52.97 -0.19 0.74 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.19 1.48 5.30 -52.48 -0.28 1.21 16 45 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 46 H 0.16 1.67 8.02 -52.49 -0.42 1.25 16 47 H 0.09 1.38 5.89 -51.93 -0.31 1.08 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 367.95 15.07 5.54 5.54 Total: -1.00 -30.48 367.95 -8.57 -39.06 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.78 Total: 2.76 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.90 Total: -2.40 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.32 Total: -52.52 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.25 Total: 17.78 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.48 -8.57 -39.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963276736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.616 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds