Wall clock time and date at job start Wed Apr 1 2020 04:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99688 * 2 1 4 4 H 1.48496 * 109.46790 * 236.65374 * 3 2 1 5 5 H 1.48500 * 109.46723 * 356.65398 * 3 2 1 6 6 H 1.48498 * 109.46955 * 116.65355 * 3 2 1 7 7 C 1.38804 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00354 * 6.18378 * 7 2 1 9 9 N 1.36944 * 120.00315 * 186.18040 * 7 2 1 10 10 C 1.47420 * 125.64609 * 40.38221 * 9 7 2 11 11 C 1.54907 * 104.93139 * 155.79706 * 10 9 7 12 12 C 1.55446 * 101.44937 * 37.00048 * 11 10 9 13 13 C 1.47020 * 125.65160 * 220.35728 * 9 7 2 14 14 H 1.09001 * 109.88166 * 300.49675 * 13 9 7 15 15 C 1.52999 * 109.88311 * 61.50224 * 13 9 7 16 16 H 1.09009 * 109.49098 * 53.57474 * 15 13 9 17 17 C 1.53040 * 109.50333 * 293.48329 * 15 13 9 18 18 C 1.53032 * 109.54110 * 178.67952 * 17 15 13 19 19 C 1.53190 * 109.31290 * 61.36425 * 18 17 15 20 20 N 1.46924 * 108.77524 * 305.36414 * 19 18 17 21 21 C 1.34777 * 120.63092 * 233.63074 * 20 19 18 22 22 O 1.21554 * 120.00109 * 181.41720 * 21 20 19 23 23 C 1.47847 * 120.00103 * 1.41111 * 21 20 19 24 24 C 1.39552 * 120.54667 * 327.84224 * 23 21 20 25 25 N 1.31657 * 120.62272 * 179.97438 * 24 23 21 26 26 C 1.31940 * 121.90769 * 0.02562 * 25 24 23 27 27 C 1.38541 * 121.04222 * 0.02562 * 26 25 24 28 28 F 1.35098 * 120.36950 * 179.97438 * 27 26 25 29 29 C 1.38607 * 119.25272 * 359.68532 * 27 26 25 30 30 C 1.46925 * 118.74004 * 53.61002 * 20 19 18 31 31 H 0.96998 * 120.00615 * 0.02562 * 1 2 3 32 32 H 1.09002 * 110.36433 * 274.69228 * 10 9 7 33 33 H 1.08999 * 110.36927 * 36.90024 * 10 9 7 34 34 H 1.08996 * 111.00623 * 155.13337 * 11 10 9 35 35 H 1.08997 * 111.00433 * 278.99009 * 11 10 9 36 36 H 1.08999 * 110.70897 * 206.14569 * 12 11 10 37 37 H 1.09005 * 110.70840 * 82.88908 * 12 11 10 38 38 H 1.09005 * 109.45677 * 298.70213 * 17 15 13 39 39 H 1.09006 * 109.46000 * 58.65886 * 17 15 13 40 40 H 1.09001 * 109.50317 * 301.41038 * 18 17 15 41 41 H 1.09001 * 109.52897 * 181.32874 * 18 17 15 42 42 H 1.09000 * 109.58935 * 185.57959 * 19 18 17 43 43 H 1.09002 * 109.58913 * 65.14818 * 19 18 17 44 44 H 1.08003 * 119.69214 * 359.97258 * 24 23 21 45 45 H 1.07997 * 119.47961 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.86784 * 180.31959 * 29 27 26 47 47 H 1.09001 * 109.59050 * 186.60407 * 30 20 19 48 48 H 1.08994 * 109.70756 * 66.24305 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1641 1.6617 -1.1696 5 1 1.2870 2.7453 -0.0817 6 1 3.0415 1.7325 1.2513 7 6 2.0103 -1.2020 0.0005 8 1 1.4751 -2.1348 -0.0998 9 7 3.3737 -1.2054 0.1282 10 6 4.1545 -0.3377 1.0287 11 6 5.4774 -1.1051 1.2746 12 6 5.7270 -1.7446 -0.1201 13 6 4.3013 -2.0753 -0.6096 14 1 4.0720 -3.1208 -0.4040 15 6 4.1870 -1.8033 -2.1109 16 1 4.3228 -0.7382 -2.2990 17 6 2.8052 -2.2377 -2.6050 18 6 2.6779 -1.9358 -4.0999 19 6 3.7382 -2.7299 -4.8692 20 7 5.0595 -2.4268 -4.3027 21 6 6.0645 -2.0012 -5.0936 22 8 7.1602 -1.7784 -4.6170 23 6 5.8341 -1.8056 -6.5408 24 6 4.9270 -2.6116 -7.2300 25 7 4.7204 -2.4383 -8.5187 26 6 5.3533 -1.5079 -9.2075 27 6 6.2703 -0.6672 -8.5979 28 9 6.9110 0.2806 -9.3164 29 6 6.5186 -0.8056 -7.2412 30 6 5.2644 -2.5959 -2.8577 31 1 -0.4851 0.8400 -0.0004 32 1 4.3553 0.6214 0.5513 33 1 3.6220 -0.1889 1.9681 34 1 6.2822 -0.4206 1.5424 35 1 5.3482 -1.8717 2.0386 36 1 6.3229 -2.6525 -0.0267 37 1 6.2092 -1.0326 -0.7899 38 1 2.6799 -3.3077 -2.4387 39 1 2.0359 -1.6928 -2.0577 40 1 2.8276 -0.8696 -4.2698 41 1 1.6853 -2.2236 -4.4465 42 1 3.7172 -2.4441 -5.9208 43 1 3.5360 -3.7968 -4.7742 44 1 4.3894 -3.3848 -6.7013 45 1 5.1539 -1.4004 -10.2635 46 1 7.2243 -0.1610 -6.7385 47 1 6.2503 -2.2216 -2.5821 48 1 5.1882 -3.6514 -2.5967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963276736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:36 Heat of formation + Delta-G solvation = -15.235193 kcal Electronic energy + Delta-G solvation = -31608.346853 eV Core-core repulsion = 27385.379121 eV Total energy + Delta-G solvation = -4222.967733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.13842 -42.15563 -40.64875 -39.68041 -38.03420 -34.74484 -34.50571 -33.66427 -32.83855 -31.95115 -31.73884 -28.57862 -27.19057 -26.32231 -25.36071 -24.79638 -23.87600 -22.72504 -21.71098 -20.84789 -20.54149 -19.26626 -18.81403 -18.50640 -18.25014 -17.27834 -17.17047 -17.10952 -16.86669 -16.70203 -16.17226 -15.55643 -15.27617 -15.05134 -15.02781 -14.96924 -14.69203 -14.49768 -14.34290 -14.17016 -14.07362 -13.89441 -13.65808 -13.32229 -13.09601 -12.95903 -12.71605 -12.40200 -12.21374 -12.17118 -11.97462 -11.81213 -11.71050 -11.58681 -11.35974 -11.19166 -11.16768 -10.95683 -10.72579 -10.57786 -10.10884 -9.71215 -8.67296 -8.16397 -5.60410 -0.64466 -0.24860 1.29198 1.34493 1.41088 1.45941 1.78092 2.40129 2.42009 2.79472 3.08225 3.13381 3.26830 3.31558 3.50337 3.56503 3.74375 3.86695 3.92239 3.97732 4.07884 4.13487 4.18154 4.23410 4.37194 4.38942 4.44670 4.57808 4.58603 4.64130 4.66320 4.74420 4.77789 4.86053 4.89789 4.95044 5.01658 5.06948 5.14714 5.26649 5.30673 5.32415 5.41936 5.49515 5.63943 5.81966 5.95306 6.20454 6.23160 6.49217 6.85917 6.89710 7.55751 8.24201 9.02432 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.003153 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.991012 B = 8879.615258 C = 9322.317125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.014 4.014 3 Si 0.937 3.063 4 H -0.288 1.288 5 H -0.315 1.315 6 H -0.257 1.257 7 C -0.207 4.207 8 H 0.058 0.942 9 N -0.619 5.619 10 C 0.104 3.896 11 C -0.121 4.121 12 C -0.122 4.122 13 C 0.160 3.840 14 H 0.050 0.950 15 C -0.092 4.092 16 H 0.030 0.970 17 C -0.124 4.124 18 C -0.129 4.129 19 C 0.079 3.921 20 N -0.594 5.594 21 C 0.560 3.440 22 O -0.571 6.571 23 C -0.163 4.163 24 C 0.115 3.885 25 N -0.465 5.465 26 C 0.106 3.894 27 C 0.042 3.958 28 F -0.127 7.127 29 C -0.065 4.065 30 C 0.123 3.877 31 H 0.260 0.740 32 H 0.007 0.993 33 H 0.037 0.963 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.208 0.792 45 H 0.205 0.795 46 H 0.152 0.848 47 H 0.084 0.916 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.613 -7.047 -15.712 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.210 4.210 3 Si 0.768 3.232 4 H -0.215 1.215 5 H -0.243 1.243 6 H -0.182 1.182 7 C -0.336 4.336 8 H 0.075 0.925 9 N -0.345 5.345 10 C -0.021 4.021 11 C -0.159 4.159 12 C -0.160 4.160 13 C 0.054 3.946 14 H 0.068 0.932 15 C -0.113 4.113 16 H 0.049 0.951 17 C -0.161 4.161 18 C -0.167 4.167 19 C -0.042 4.042 20 N -0.324 5.324 21 C 0.348 3.652 22 O -0.452 6.452 23 C -0.168 4.168 24 C -0.042 4.042 25 N -0.172 5.172 26 C -0.052 4.052 27 C 0.021 3.979 28 F -0.105 7.105 29 C -0.092 4.092 30 C 0.001 3.999 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.135 0.865 43 H 0.128 0.872 44 H 0.224 0.776 45 H 0.222 0.778 46 H 0.169 0.831 47 H 0.103 0.897 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.370 -7.356 -15.880 21.431 hybrid contribution 0.471 2.350 0.660 2.486 sum 12.841 -5.006 -15.220 20.533 Atomic orbital electron populations 1.69834 1.06960 1.26973 1.56267 1.25943 0.95521 1.00282 0.99294 0.86170 0.77125 0.80747 0.79186 1.21510 1.24340 1.18209 1.18217 0.80274 0.92095 1.43053 0.92495 1.44880 1.01590 1.44115 1.43876 1.22140 0.93503 0.93398 0.93048 1.22742 0.95746 0.99795 0.97615 1.22717 0.95411 1.01687 0.96201 1.21221 0.89629 0.94417 0.89335 0.93217 1.21755 0.95390 0.97836 0.96286 0.95129 1.21737 0.97735 1.01307 0.95346 1.21871 0.99727 0.99306 0.95805 1.22927 0.80197 1.01812 0.99229 1.48091 1.11575 1.64213 1.08494 1.18241 0.84050 0.76786 0.86103 1.90767 1.25195 1.53118 1.76081 1.20757 1.01327 1.00268 0.94474 1.24012 0.92207 0.97906 0.90033 1.67969 1.23411 1.18116 1.07751 1.23667 0.89954 0.88902 1.02699 1.18655 0.97637 0.91818 0.89837 1.91556 1.80018 1.61828 1.77119 1.21798 0.97589 0.96881 0.92921 1.21748 0.99320 1.01100 0.77717 0.93053 0.97571 0.94426 0.89503 0.90156 0.88234 0.91928 0.91688 0.91269 0.94284 0.89316 0.86502 0.87156 0.77554 0.77802 0.83073 0.89725 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.13 13.97 21.65 0.30 -57.82 16 2 C -0.01 -0.82 5.50 84.86 0.47 -0.35 16 3 Si 0.94 47.17 25.00 68.60 1.71 48.89 16 4 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 5 H -0.31 -16.18 7.11 99.48 0.71 -15.48 16 6 H -0.26 -12.09 5.78 99.48 0.58 -11.52 16 7 C -0.21 -11.04 7.37 84.03 0.62 -10.42 16 8 H 0.06 3.32 7.92 -2.91 -0.02 3.30 16 9 N -0.62 -27.73 2.68 -668.29 -1.79 -29.52 16 10 C 0.10 4.26 4.66 86.86 0.40 4.67 16 11 C -0.12 -3.63 7.11 32.09 0.23 -3.40 16 12 C -0.12 -3.51 5.44 31.88 0.17 -3.34 16 13 C 0.16 5.64 2.81 45.34 0.13 5.77 16 14 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 15 C -0.09 -3.09 1.97 -10.72 -0.02 -3.11 16 16 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 17 C -0.12 -4.24 4.82 30.62 0.15 -4.09 16 18 C -0.13 -3.50 6.08 30.67 0.19 -3.31 16 19 C 0.08 1.53 4.91 86.36 0.42 1.96 16 20 N -0.59 -14.59 2.97 -822.32 -2.44 -17.03 16 21 C 0.56 14.96 7.47 86.79 0.65 15.61 16 22 O -0.57 -19.13 16.24 -3.88 -0.06 -19.19 16 23 C -0.16 -3.48 5.54 -20.00 -0.11 -3.59 16 24 C 0.12 1.92 8.64 85.04 0.73 2.65 16 25 N -0.47 -7.68 10.34 -196.05 -2.03 -9.71 16 26 C 0.11 1.50 11.16 84.75 0.95 2.45 16 27 C 0.04 0.73 7.33 22.43 0.16 0.89 16 28 F -0.13 -2.26 17.28 44.97 0.78 -1.48 16 29 C -0.06 -1.34 9.73 22.78 0.22 -1.12 16 30 C 0.12 3.30 5.28 86.36 0.46 3.75 16 31 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.01 0.29 5.13 -2.39 -0.01 0.28 16 33 H 0.04 1.64 7.72 -2.39 -0.02 1.62 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 36 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.06 1.85 7.33 -2.38 -0.02 1.83 16 38 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.07 3.14 5.01 -2.38 -0.01 3.13 16 40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.12 1.85 3.55 -3.37 -0.01 1.84 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.21 2.46 5.30 -2.91 -0.02 2.44 16 45 H 0.21 1.50 8.06 -2.91 -0.02 1.47 16 46 H 0.15 3.22 8.02 -2.91 -0.02 3.20 16 47 H 0.08 2.42 5.89 -2.39 -0.01 2.41 16 48 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -70.47 367.95 3.14 -67.33 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.85 Total: 13.52 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 5.82 Total: 5.02 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -5.96 Total: -114.09 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.06 Total: -19.19 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.48 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.71 Total: 48.89 kcal Total: -70.47 3.14 -67.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963276736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.098 kcal (2) G-P(sol) polarization free energy of solvation -70.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds