Wall clock time and date at job start Wed Apr 1 2020 04:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00117 * 2 1 4 4 H 1.48497 * 109.47195 * 239.99930 * 3 2 1 5 5 H 1.48498 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47157 * 120.00106 * 3 2 1 7 7 C 1.38810 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99685 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64511 * 345.44068 * 9 7 2 11 11 C 1.54910 * 104.82814 * 204.09558 * 10 9 7 12 12 C 1.55153 * 101.58317 * 322.98653 * 11 10 9 13 13 C 1.47015 * 125.64914 * 165.39954 * 9 7 2 14 14 H 1.09002 * 109.88470 * 59.40505 * 13 9 7 15 15 C 1.53000 * 109.88377 * 298.39179 * 13 9 7 16 16 H 1.08998 * 109.52552 * 62.38568 * 15 13 9 17 17 C 1.53075 * 109.62502 * 182.41570 * 15 13 9 18 18 C 1.53041 * 109.65625 * 181.16882 * 17 15 13 19 19 C 1.53185 * 109.31507 * 298.69703 * 18 17 15 20 20 N 1.46931 * 108.77746 * 54.63727 * 19 18 17 21 21 C 1.34773 * 120.63286 * 126.40888 * 20 19 18 22 22 O 1.21526 * 120.00007 * 173.25736 * 21 20 19 23 23 C 1.48056 * 119.99954 * 353.25859 * 21 20 19 24 24 C 1.39380 * 119.68937 * 156.98420 * 23 21 20 25 25 C 1.38468 * 119.08848 * 179.77395 * 24 23 21 26 26 C 1.38895 * 118.47121 * 0.49544 * 25 24 23 27 27 F 1.35103 * 120.35044 * 179.72813 * 26 25 24 28 28 C 1.38877 * 119.29646 * 359.74377 * 26 25 24 29 29 N 1.31456 * 120.85807 * 0.02562 * 28 26 25 30 30 C 1.46920 * 118.73427 * 306.39510 * 20 19 18 31 31 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.36462 * 322.92808 * 10 9 7 33 33 H 1.08997 * 110.36849 * 85.25271 * 10 9 7 34 34 H 1.08998 * 111.00839 * 81.06701 * 11 10 9 35 35 H 1.09003 * 111.00111 * 204.88214 * 11 10 9 36 36 H 1.09001 * 110.72195 * 277.14739 * 12 11 10 37 37 H 1.09000 * 110.72633 * 153.86620 * 12 11 10 38 38 H 1.08997 * 109.34623 * 61.14831 * 17 15 13 39 39 H 1.09001 * 109.44060 * 301.25619 * 17 15 13 40 40 H 1.09006 * 109.49527 * 178.74845 * 18 17 15 41 41 H 1.08999 * 109.49848 * 58.65207 * 18 17 15 42 42 H 1.09002 * 109.59072 * 294.85360 * 19 18 17 43 43 H 1.09004 * 109.70632 * 174.49316 * 19 18 17 44 44 H 1.07994 * 120.45290 * 359.97438 * 24 23 21 45 45 H 1.08005 * 120.76137 * 180.24037 * 25 24 23 46 46 H 1.08006 * 119.57241 * 179.97438 * 28 26 25 47 47 H 1.09003 * 109.58747 * 173.38999 * 30 20 19 48 48 H 1.09001 * 109.58941 * 293.67314 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1084 -2.5523 0.3012 11 6 -0.2488 -4.0208 0.7739 12 6 0.7642 -4.7444 -0.1522 13 6 1.8984 -3.7082 -0.3001 14 1 2.7020 -3.9322 0.4015 15 6 2.4375 -3.7278 -1.7318 16 1 3.2401 -2.9967 -1.8289 17 6 2.9779 -5.1221 -2.0588 18 6 3.5438 -5.1346 -3.4806 19 6 2.4253 -4.8046 -4.4740 20 7 1.8055 -3.5313 -4.0825 21 6 1.6943 -2.5209 -4.9674 22 8 1.0724 -1.5196 -4.6714 23 6 2.3298 -2.6307 -6.3001 24 6 1.8482 -1.8641 -7.3599 25 6 2.4549 -1.9732 -8.5998 26 6 3.5186 -2.8550 -8.7412 27 9 4.1347 -2.9955 -9.9353 28 6 3.9419 -3.5910 -7.6422 29 7 3.3491 -3.4628 -6.4759 30 6 1.3090 -3.3806 -2.7079 31 1 -0.4850 0.8401 0.0004 32 1 -0.4105 -1.8681 1.0941 33 1 -0.7057 -2.3834 -0.5948 34 1 0.0367 -4.1233 1.8209 35 1 -1.2614 -4.3891 0.6094 36 1 0.3135 -4.9635 -1.1201 37 1 1.1335 -5.6559 0.3177 38 1 2.1696 -5.8495 -1.9833 39 1 3.7662 -5.3806 -1.3518 40 1 3.9478 -6.1223 -3.7027 41 1 4.3355 -4.3900 -3.5636 42 1 1.6761 -5.5961 -4.4570 43 1 2.8400 -4.7155 -5.4781 44 1 1.0155 -1.1919 -7.2151 45 1 2.1062 -1.3890 -9.4387 46 1 4.7684 -4.2784 -7.7473 47 1 0.9893 -2.3512 -2.5456 48 1 0.4671 -4.0542 -2.5476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963291023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:43 Heat of formation + Delta-G solvation = -0.550715 kcal Electronic energy + Delta-G solvation = -31823.330630 eV Core-core repulsion = 27600.999664 eV Total energy + Delta-G solvation = -4222.330966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.40328 -40.96866 -39.37957 -38.01471 -36.35925 -33.37708 -32.66037 -32.17594 -31.40153 -30.73670 -29.19666 -26.77031 -25.75108 -24.46853 -24.33454 -23.69880 -22.57004 -21.15992 -20.32502 -19.62715 -18.32687 -18.02666 -17.80720 -17.24586 -16.51846 -16.27018 -15.92571 -15.30211 -14.94898 -14.82641 -14.59461 -14.22975 -14.12556 -14.10940 -13.81754 -13.70439 -13.48261 -13.27365 -12.94672 -12.70359 -12.38418 -12.10695 -11.85222 -11.54962 -11.39823 -11.22445 -10.97389 -10.81583 -10.68281 -10.61019 -10.36321 -10.11221 -10.04529 -10.01602 -9.78060 -9.74693 -9.53958 -9.49730 -9.37055 -9.16520 -8.46639 -8.18568 -6.66748 -5.63805 -2.98501 0.22891 0.66843 2.61448 3.14265 3.45321 3.47941 3.53064 3.53606 3.58821 3.93594 4.30404 4.34937 4.48433 4.58678 4.89047 5.11775 5.22293 5.26111 5.33201 5.42409 5.46649 5.48728 5.53431 5.65186 5.68705 5.77661 5.81277 5.95193 5.96604 6.00107 6.11263 6.18569 6.28171 6.32341 6.35998 6.45091 6.47774 6.59650 6.67334 6.77757 6.90271 6.95964 7.08427 7.15575 7.23711 7.63080 7.72174 7.73093 7.90310 8.36878 8.39510 9.31184 9.92627 10.60924 11.48339 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.003607 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.825335 B = 7761.265440 C = 9199.018137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.228 4.228 8 H 0.071 0.929 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.150 4.150 12 C -0.128 4.128 13 C 0.168 3.832 14 H 0.035 0.965 15 C -0.104 4.104 16 H 0.070 0.930 17 C -0.117 4.117 18 C -0.124 4.124 19 C 0.077 3.923 20 N -0.587 5.587 21 C 0.562 3.438 22 O -0.515 6.515 23 C 0.081 3.919 24 C -0.085 4.085 25 C -0.113 4.113 26 C 0.063 3.937 27 F -0.127 7.127 28 C 0.068 3.932 29 N -0.419 5.419 30 C 0.124 3.876 31 H 0.252 0.748 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.129 0.871 44 H 0.159 0.841 45 H 0.155 0.845 46 H 0.175 0.825 47 H 0.113 0.887 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -12.430 -15.464 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.195 4.195 3 Si 0.736 3.264 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.357 4.357 8 H 0.088 0.912 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.189 4.189 12 C -0.166 4.166 13 C 0.060 3.940 14 H 0.052 0.948 15 C -0.126 4.126 16 H 0.088 0.912 17 C -0.155 4.155 18 C -0.163 4.163 19 C -0.046 4.046 20 N -0.319 5.319 21 C 0.347 3.653 22 O -0.390 6.390 23 C -0.057 4.057 24 C -0.105 4.105 25 C -0.139 4.139 26 C 0.041 3.959 27 F -0.106 7.106 28 C -0.092 4.092 29 N -0.130 5.130 30 C 0.004 3.996 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.146 0.854 44 H 0.177 0.823 45 H 0.172 0.828 46 H 0.192 0.808 47 H 0.131 0.869 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.955 -12.104 -14.573 19.582 hybrid contribution 0.459 1.289 -1.043 1.721 sum 5.413 -10.815 -15.617 19.752 Atomic orbital electron populations 1.69907 1.04878 1.25135 1.56072 1.24821 0.95570 0.97528 1.01620 0.86312 0.78660 0.83707 0.77758 1.21193 1.21639 1.21317 1.18826 0.90118 0.82301 1.44411 0.91151 1.44488 1.06022 1.01108 1.80073 1.21414 0.85202 0.89887 0.98661 1.23023 0.97412 0.99898 0.98583 1.22666 0.97220 0.97229 0.99471 1.20908 0.94072 0.87226 0.91785 0.94774 1.21948 0.97970 0.95500 0.97145 0.91198 1.21649 1.00155 0.97937 0.95784 1.21783 0.98055 1.01162 0.95258 1.22626 0.95157 0.84430 1.02402 1.48024 1.58232 1.13508 1.12102 1.17752 0.80814 0.83757 0.83007 1.90896 1.41045 1.30087 1.76971 1.21546 0.94085 0.94449 0.95587 1.22085 1.00014 0.97649 0.90787 1.21690 0.94919 0.98065 0.99247 1.19027 0.94814 0.99454 0.82598 1.91545 1.81373 1.94560 1.43091 1.23099 0.99924 0.99149 0.87031 1.67685 1.07277 1.15599 1.22484 1.21825 0.95426 1.05200 0.77171 0.93741 0.91309 0.95742 0.92510 0.92628 0.91696 0.92581 0.92188 0.92247 0.91634 0.91630 0.92858 0.85434 0.82328 0.82765 0.80841 0.86899 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.18 10.57 55.49 0.59 -26.59 16 2 C 0.00 0.05 5.47 -17.43 -0.10 -0.04 16 3 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.23 -6.34 9.85 -15.06 -0.15 -6.49 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.59 -14.72 2.41 -162.57 -0.39 -15.12 16 10 C 0.17 4.18 5.41 -2.53 -0.01 4.16 16 11 C -0.15 -2.83 7.08 -24.58 -0.17 -3.00 16 12 C -0.13 -2.19 5.21 -24.89 -0.13 -2.31 16 13 C 0.17 3.37 2.96 -66.95 -0.20 3.17 16 14 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 15 C -0.10 -1.91 2.10 -90.48 -0.19 -2.10 16 16 H 0.07 1.48 8.05 -51.93 -0.42 1.06 16 17 C -0.12 -1.65 4.91 -26.67 -0.13 -1.78 16 18 C -0.12 -1.55 6.08 -26.61 -0.16 -1.71 16 19 C 0.08 1.00 6.12 -3.71 -0.02 0.98 16 20 N -0.59 -9.98 2.97 -173.80 -0.52 -10.49 16 21 C 0.56 10.12 7.58 -12.23 -0.09 10.03 16 22 O -0.52 -11.47 16.00 5.34 0.09 -11.38 16 23 C 0.08 1.12 6.40 -83.02 -0.53 0.59 16 24 C -0.08 -0.96 9.62 -39.07 -0.38 -1.33 16 25 C -0.11 -0.98 10.15 -39.25 -0.40 -1.38 16 26 C 0.06 0.56 7.36 -39.10 -0.29 0.27 16 27 F -0.13 -1.11 17.28 2.25 0.04 -1.07 16 28 C 0.07 0.62 11.17 -17.48 -0.20 0.42 16 29 N -0.42 -4.98 6.54 -9.74 -0.06 -5.04 16 30 C 0.12 2.42 5.26 -3.71 -0.02 2.40 16 31 H 0.25 7.39 8.31 -40.82 -0.34 7.06 16 32 H 0.07 1.86 6.93 -51.93 -0.36 1.50 16 33 H 0.02 0.64 8.06 -51.93 -0.42 0.23 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.06 5.43 -51.93 -0.28 0.78 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.79 7.08 -51.93 -0.37 0.42 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.13 1.54 3.93 -75.24 -0.30 1.25 16 44 H 0.16 1.74 7.81 -52.49 -0.41 1.33 16 45 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 46 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 47 H 0.11 2.83 6.67 -51.93 -0.35 2.48 16 48 H 0.06 1.13 5.95 -51.93 -0.31 0.82 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -32.39 376.68 -9.75 -42.14 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.98 Total: 2.07 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -3.17 Total: 1.86 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.39 Total: -57.24 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.39 -9.75 -42.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963291023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.589 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds