Wall clock time and date at job start Wed Apr 1 2020 04:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00117 * 2 1 4 4 H 1.48497 * 109.47195 * 239.99930 * 3 2 1 5 5 H 1.48498 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47157 * 120.00106 * 3 2 1 7 7 C 1.38810 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99685 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64511 * 345.44068 * 9 7 2 11 11 C 1.54910 * 104.82814 * 204.09558 * 10 9 7 12 12 C 1.55153 * 101.58317 * 322.98653 * 11 10 9 13 13 C 1.47015 * 125.64914 * 165.39954 * 9 7 2 14 14 H 1.09002 * 109.88470 * 59.40505 * 13 9 7 15 15 C 1.53000 * 109.88377 * 298.39179 * 13 9 7 16 16 H 1.08998 * 109.52552 * 62.38568 * 15 13 9 17 17 C 1.53075 * 109.62502 * 182.41570 * 15 13 9 18 18 C 1.53041 * 109.65625 * 181.16882 * 17 15 13 19 19 C 1.53185 * 109.31507 * 298.69703 * 18 17 15 20 20 N 1.46931 * 108.77746 * 54.63727 * 19 18 17 21 21 C 1.34773 * 120.63286 * 126.40888 * 20 19 18 22 22 O 1.21526 * 120.00007 * 173.25736 * 21 20 19 23 23 C 1.48056 * 119.99954 * 353.25859 * 21 20 19 24 24 C 1.39380 * 119.68937 * 156.98420 * 23 21 20 25 25 C 1.38468 * 119.08848 * 179.77395 * 24 23 21 26 26 C 1.38895 * 118.47121 * 0.49544 * 25 24 23 27 27 F 1.35103 * 120.35044 * 179.72813 * 26 25 24 28 28 C 1.38877 * 119.29646 * 359.74377 * 26 25 24 29 29 N 1.31456 * 120.85807 * 0.02562 * 28 26 25 30 30 C 1.46920 * 118.73427 * 306.39510 * 20 19 18 31 31 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.36462 * 322.92808 * 10 9 7 33 33 H 1.08997 * 110.36849 * 85.25271 * 10 9 7 34 34 H 1.08998 * 111.00839 * 81.06701 * 11 10 9 35 35 H 1.09003 * 111.00111 * 204.88214 * 11 10 9 36 36 H 1.09001 * 110.72195 * 277.14739 * 12 11 10 37 37 H 1.09000 * 110.72633 * 153.86620 * 12 11 10 38 38 H 1.08997 * 109.34623 * 61.14831 * 17 15 13 39 39 H 1.09001 * 109.44060 * 301.25619 * 17 15 13 40 40 H 1.09006 * 109.49527 * 178.74845 * 18 17 15 41 41 H 1.08999 * 109.49848 * 58.65207 * 18 17 15 42 42 H 1.09002 * 109.59072 * 294.85360 * 19 18 17 43 43 H 1.09004 * 109.70632 * 174.49316 * 19 18 17 44 44 H 1.07994 * 120.45290 * 359.97438 * 24 23 21 45 45 H 1.08005 * 120.76137 * 180.24037 * 25 24 23 46 46 H 1.08006 * 119.57241 * 179.97438 * 28 26 25 47 47 H 1.09003 * 109.58747 * 173.38999 * 30 20 19 48 48 H 1.09001 * 109.58941 * 293.67314 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1084 -2.5523 0.3012 11 6 -0.2488 -4.0208 0.7739 12 6 0.7642 -4.7444 -0.1522 13 6 1.8984 -3.7082 -0.3001 14 1 2.7020 -3.9322 0.4015 15 6 2.4375 -3.7278 -1.7318 16 1 3.2401 -2.9967 -1.8289 17 6 2.9779 -5.1221 -2.0588 18 6 3.5438 -5.1346 -3.4806 19 6 2.4253 -4.8046 -4.4740 20 7 1.8055 -3.5313 -4.0825 21 6 1.6943 -2.5209 -4.9674 22 8 1.0724 -1.5196 -4.6714 23 6 2.3298 -2.6307 -6.3001 24 6 1.8482 -1.8641 -7.3599 25 6 2.4549 -1.9732 -8.5998 26 6 3.5186 -2.8550 -8.7412 27 9 4.1347 -2.9955 -9.9353 28 6 3.9419 -3.5910 -7.6422 29 7 3.3491 -3.4628 -6.4759 30 6 1.3090 -3.3806 -2.7079 31 1 -0.4850 0.8401 0.0004 32 1 -0.4105 -1.8681 1.0941 33 1 -0.7057 -2.3834 -0.5948 34 1 0.0367 -4.1233 1.8209 35 1 -1.2614 -4.3891 0.6094 36 1 0.3135 -4.9635 -1.1201 37 1 1.1335 -5.6559 0.3177 38 1 2.1696 -5.8495 -1.9833 39 1 3.7662 -5.3806 -1.3518 40 1 3.9478 -6.1223 -3.7027 41 1 4.3355 -4.3900 -3.5636 42 1 1.6761 -5.5961 -4.4570 43 1 2.8400 -4.7155 -5.4781 44 1 1.0155 -1.1919 -7.2151 45 1 2.1062 -1.3890 -9.4387 46 1 4.7684 -4.2784 -7.7473 47 1 0.9893 -2.3512 -2.5456 48 1 0.4671 -4.0542 -2.5476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963291023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:42 Heat of formation + Delta-G solvation = -19.715715 kcal Electronic energy + Delta-G solvation = -31824.161687 eV Core-core repulsion = 27600.999664 eV Total energy + Delta-G solvation = -4223.162023 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.12377 -42.04223 -40.63682 -39.51707 -37.84191 -34.82873 -34.10885 -33.51585 -32.45301 -31.97466 -31.12945 -28.34399 -26.94769 -26.47379 -25.17021 -24.75926 -23.95848 -22.44564 -21.92157 -21.13416 -19.78842 -18.89741 -18.78874 -18.63424 -18.13069 -17.35307 -16.97815 -16.83507 -16.37955 -16.14473 -15.87583 -15.72438 -15.56706 -15.25027 -15.01972 -14.79238 -14.54927 -14.42057 -14.23170 -13.97560 -13.90519 -13.70090 -13.41731 -13.09375 -12.94225 -12.87297 -12.72571 -12.66383 -12.12505 -11.99908 -11.85906 -11.74464 -11.54053 -11.44654 -11.34329 -11.16255 -11.10117 -11.09418 -10.64256 -10.28883 -10.16612 -9.54711 -8.73606 -7.84813 -5.18292 -0.67685 -0.09135 1.37130 1.42045 1.46290 1.47434 1.90184 2.45736 2.48094 2.78240 2.97622 3.34713 3.46188 3.61437 3.66107 3.70155 3.93432 3.95729 4.03219 4.15755 4.21673 4.24063 4.31709 4.36965 4.43727 4.56368 4.63883 4.67297 4.73482 4.79394 4.86976 4.90213 4.98840 4.99684 5.09728 5.14640 5.21500 5.24049 5.34517 5.36820 5.43651 5.49660 5.60304 5.62325 5.69428 5.71613 5.82804 6.28073 6.29407 6.47970 7.02669 7.14448 7.84351 8.50525 9.26204 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.003607 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.825335 B = 7761.265440 C = 9199.018137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.058 4.058 3 Si 0.960 3.040 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.227 4.227 8 H 0.068 0.932 9 N -0.611 5.611 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.113 4.113 13 C 0.158 3.842 14 H 0.037 0.963 15 C -0.093 4.093 16 H 0.030 0.970 17 C -0.109 4.109 18 C -0.118 4.118 19 C 0.071 3.929 20 N -0.589 5.589 21 C 0.551 3.449 22 O -0.579 6.579 23 C 0.056 3.944 24 C -0.089 4.089 25 C -0.100 4.100 26 C 0.076 3.924 27 F -0.120 7.120 28 C 0.078 3.922 29 N -0.429 5.429 30 C 0.137 3.863 31 H 0.243 0.757 32 H 0.029 0.971 33 H -0.012 1.012 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.144 0.856 44 H 0.152 0.848 45 H 0.186 0.814 46 H 0.211 0.789 47 H 0.045 0.955 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.267 -16.180 -17.435 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.251 4.251 3 Si 0.790 3.210 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.357 4.357 8 H 0.086 0.914 9 N -0.335 5.335 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.150 4.150 13 C 0.051 3.949 14 H 0.055 0.945 15 C -0.114 4.114 16 H 0.048 0.952 17 C -0.147 4.147 18 C -0.156 4.156 19 C -0.049 4.049 20 N -0.319 5.319 21 C 0.338 3.662 22 O -0.459 6.459 23 C -0.079 4.079 24 C -0.110 4.110 25 C -0.126 4.126 26 C 0.054 3.946 27 F -0.098 7.098 28 C -0.083 4.083 29 N -0.140 5.140 30 C 0.015 3.985 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.006 0.994 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.160 0.840 44 H 0.170 0.830 45 H 0.203 0.797 46 H 0.228 0.772 47 H 0.064 0.936 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.171 -15.925 -16.541 24.054 hybrid contribution -0.129 2.414 -0.560 2.482 sum 7.041 -13.510 -17.101 22.903 Atomic orbital electron populations 1.70118 1.06057 1.24884 1.58006 1.25529 0.96375 1.00501 1.02726 0.85423 0.77500 0.80281 0.77819 1.21783 1.21932 1.19686 1.19083 0.90256 0.83885 1.42487 0.91435 1.44707 1.06355 1.02149 1.80257 1.21170 0.84565 0.93081 0.95876 1.22885 0.99644 0.95656 0.99298 1.22643 0.95149 0.97363 0.99870 1.21205 0.95318 0.85746 0.92630 0.94527 1.21761 0.96146 0.97775 0.95762 0.95167 1.21613 1.01171 0.94585 0.97282 1.21775 0.97139 1.02902 0.93780 1.22975 0.95794 0.82665 1.03505 1.48178 1.57866 1.14961 1.10867 1.18485 0.80113 0.82929 0.84649 1.90848 1.43985 1.32407 1.78622 1.20932 0.95894 0.97270 0.93841 1.22066 1.00261 0.97335 0.91374 1.21932 0.94192 0.97722 0.98764 1.19046 0.94190 0.98649 0.82688 1.91577 1.81130 1.94389 1.42703 1.23639 0.99880 0.98945 0.85835 1.67521 1.06898 1.15615 1.23977 1.21406 0.96311 1.01317 0.79476 0.94740 0.95291 0.99392 0.91626 0.90122 0.90785 0.88376 0.90030 0.90777 0.87494 0.93246 0.90953 0.83972 0.83047 0.79708 0.77224 0.93596 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.22 10.57 21.65 0.23 -59.99 16 2 C -0.06 -3.50 5.47 84.86 0.46 -3.04 16 3 Si 0.96 49.78 29.55 68.60 2.03 51.81 16 4 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 5 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 6 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 7 C -0.23 -13.38 9.85 84.03 0.83 -12.55 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 9 N -0.61 -31.82 2.41 -668.26 -1.61 -33.43 16 10 C 0.18 9.07 5.41 86.85 0.47 9.54 16 11 C -0.14 -4.98 7.08 31.98 0.23 -4.76 16 12 C -0.11 -3.56 5.21 31.78 0.17 -3.40 16 13 C 0.16 6.30 2.96 45.35 0.13 6.43 16 14 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 15 C -0.09 -3.45 2.10 -10.70 -0.02 -3.48 16 16 H 0.03 1.34 8.05 -2.39 -0.02 1.32 16 17 C -0.11 -2.72 4.91 30.63 0.15 -2.57 16 18 C -0.12 -2.56 6.08 30.67 0.19 -2.38 16 19 C 0.07 1.72 6.12 86.36 0.53 2.24 16 20 N -0.59 -20.59 2.97 -822.08 -2.45 -23.04 16 21 C 0.55 21.17 7.58 86.85 0.66 21.82 16 22 O -0.58 -28.49 16.00 -3.80 -0.06 -28.55 16 23 C 0.06 1.58 6.40 41.89 0.27 1.84 16 24 C -0.09 -2.02 9.62 22.60 0.22 -1.80 16 25 C -0.10 -1.50 10.15 22.48 0.23 -1.28 16 26 C 0.08 1.08 7.36 22.58 0.17 1.25 16 27 F -0.12 -1.60 17.28 44.97 0.78 -0.82 16 28 C 0.08 1.14 11.17 84.90 0.95 2.09 16 29 N -0.43 -9.40 6.54 -184.73 -1.21 -10.61 16 30 C 0.14 5.61 5.26 86.36 0.45 6.06 16 31 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.03 1.67 6.93 -2.39 -0.02 1.65 16 33 H -0.01 -0.68 8.06 -2.39 -0.02 -0.70 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.07 2.23 5.43 -2.39 -0.01 2.21 16 37 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.08 1.75 7.08 -2.39 -0.02 1.74 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.14 3.08 3.93 -48.41 -0.19 2.89 16 44 H 0.15 3.56 7.81 -2.91 -0.02 3.54 16 45 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 46 H 0.21 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.05 2.52 6.67 -2.39 -0.02 2.50 16 48 H 0.07 2.64 5.95 -2.39 -0.01 2.63 16 Total: -1.00 -80.87 376.68 4.58 -76.30 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.80 Total: 12.29 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 6.07 Total: 16.04 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -5.04 Total: -127.07 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.06 Total: -28.55 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.78 Total: -0.82 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.03 Total: 51.81 kcal Total: -80.87 4.58 -76.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963291023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.580 kcal (2) G-P(sol) polarization free energy of solvation -80.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds