Wall clock time and date at job start Wed Apr 1 2020 04:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00367 * 2 1 4 4 H 1.48506 * 109.47208 * 239.99927 * 3 2 1 5 5 H 1.48500 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47123 * 120.00216 * 3 2 1 7 7 C 1.38816 * 119.99448 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99544 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64738 * 28.33279 * 9 7 2 11 11 C 1.54910 * 104.83163 * 155.83467 * 10 9 7 12 12 C 1.55406 * 101.66663 * 36.92515 * 11 10 9 13 13 C 1.47024 * 125.64997 * 208.28908 * 9 7 2 14 14 H 1.08998 * 109.87781 * 300.67019 * 13 9 7 15 15 C 1.53001 * 109.87914 * 61.67662 * 13 9 7 16 16 H 1.08995 * 109.50119 * 293.18281 * 15 13 9 17 17 C 1.53046 * 109.49628 * 173.12159 * 15 13 9 18 18 C 1.53032 * 109.54116 * 178.68407 * 17 15 13 19 19 C 1.53195 * 109.31135 * 61.36068 * 18 17 15 20 20 N 1.46928 * 108.77668 * 305.36823 * 19 18 17 21 21 C 1.34777 * 120.62538 * 233.62993 * 20 19 18 22 22 O 1.21532 * 119.99725 * 180.02562 * 21 20 19 23 23 C 1.48001 * 120.00500 * 0.03314 * 21 20 19 24 24 N 1.32800 * 119.75235 * 321.97691 * 23 21 20 25 25 C 1.31432 * 121.66924 * 180.02562 * 24 23 21 26 26 C 1.38684 * 120.97799 * 359.96807 * 25 24 23 27 27 C 1.38447 * 119.39414 * 0.03160 * 26 25 24 28 28 C 1.38966 * 118.46644 * 359.71971 * 27 26 25 29 29 F 1.35105 * 120.50146 * 180.26305 * 28 27 26 30 30 C 1.46917 * 118.73882 * 53.60595 * 20 19 18 31 31 H 0.97002 * 119.99279 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.36470 * 274.67146 * 10 9 7 33 33 H 1.08997 * 110.36704 * 36.88759 * 10 9 7 34 34 H 1.08994 * 111.00255 * 155.08054 * 11 10 9 35 35 H 1.08998 * 111.00797 * 278.93525 * 11 10 9 36 36 H 1.09003 * 110.85244 * 206.30284 * 12 11 10 37 37 H 1.08999 * 110.69732 * 82.95017 * 12 11 10 38 38 H 1.09004 * 109.45787 * 58.65842 * 17 15 13 39 39 H 1.09000 * 109.45527 * 298.70674 * 17 15 13 40 40 H 1.09000 * 109.49470 * 301.41412 * 18 17 15 41 41 H 1.09000 * 109.52912 * 181.32946 * 18 17 15 42 42 H 1.08999 * 109.58637 * 65.15708 * 19 18 17 43 43 H 1.09003 * 109.58417 * 185.57799 * 19 18 17 44 44 H 1.07995 * 119.51050 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.30127 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.76802 * 179.97438 * 27 26 25 47 47 H 1.08999 * 109.58641 * 186.59966 * 30 20 19 48 48 H 1.09003 * 109.69870 * 66.24950 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.0176 -2.6047 -0.5686 11 6 -0.0752 -4.1204 -0.8836 12 6 0.7194 -4.7198 0.3099 13 6 1.8082 -3.6564 0.5652 14 1 2.7363 -3.9511 0.0756 15 6 2.0405 -3.5001 2.0694 16 1 2.8679 -2.8114 2.2401 17 6 2.3765 -4.8632 2.6786 18 6 2.6412 -4.7028 4.1773 19 6 1.3794 -4.1658 4.8601 20 7 0.9663 -2.9282 4.1843 21 6 0.7699 -1.7950 4.8869 22 8 0.4279 -0.7779 4.3164 23 6 0.9710 -1.7890 6.3532 24 7 0.6031 -2.8426 7.0731 25 6 0.7637 -2.8773 8.3771 26 6 1.3281 -1.8076 9.0556 27 6 1.7268 -0.6873 8.3466 28 6 1.5507 -0.6785 6.9682 29 9 1.9300 0.3912 6.2352 30 6 0.7719 -2.9495 2.7282 31 1 -0.4849 0.8401 0.0004 32 1 -0.7846 -2.3390 0.1589 33 1 -0.1424 -2.0211 -1.4807 34 1 -1.1042 -4.4796 -0.8883 35 1 0.4186 -4.3419 -1.8297 36 1 1.1692 -5.6743 0.0364 37 1 0.0769 -4.8312 1.1833 38 1 3.2650 -5.2685 2.1942 39 1 1.5389 -5.5444 2.5287 40 1 3.4628 -4.0026 4.3287 41 1 2.9036 -5.6698 4.6066 42 1 0.5819 -4.9053 4.7877 43 1 1.5922 -3.9562 5.9084 44 1 0.4516 -3.7520 8.9284 45 1 1.4545 -1.8476 10.1275 46 1 2.1685 0.1585 8.8525 47 1 0.5838 -1.9374 2.3699 48 1 -0.0756 -3.5885 2.4800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963381451.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:13 Heat of formation + Delta-G solvation = -6.961289 kcal Electronic energy + Delta-G solvation = -32412.109778 eV Core-core repulsion = 28189.500829 eV Total energy + Delta-G solvation = -4222.608949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.01748 -40.74409 -39.39050 -37.96051 -36.25903 -33.31251 -32.57979 -32.07943 -31.28071 -30.78378 -29.17702 -26.81872 -25.76223 -24.43200 -24.09822 -23.60933 -22.50575 -21.15442 -20.23995 -19.58999 -18.26049 -17.79566 -17.60559 -17.14347 -16.52916 -16.21410 -15.66758 -15.49103 -14.81227 -14.72572 -14.40687 -14.26622 -14.01179 -13.84134 -13.76135 -13.48100 -13.40222 -13.02470 -12.96634 -12.56089 -12.50684 -12.13580 -11.81963 -11.51924 -11.39678 -11.16991 -10.86838 -10.74826 -10.67479 -10.57198 -10.23807 -10.10162 -10.05118 -10.00898 -9.80675 -9.70615 -9.54638 -9.52456 -9.32687 -9.18996 -8.38091 -8.11743 -6.48819 -5.65361 -3.06874 0.37733 0.71824 2.78390 3.13822 3.42592 3.50382 3.56475 3.57648 3.80572 4.10966 4.33783 4.44415 4.51749 4.61756 4.94175 5.08118 5.19329 5.24476 5.34967 5.44860 5.46955 5.54652 5.56419 5.65814 5.68144 5.81034 5.85888 5.89772 6.00777 6.01871 6.15357 6.21229 6.24866 6.31741 6.33700 6.45672 6.46759 6.62148 6.68878 6.78704 7.02012 7.04306 7.14464 7.22857 7.36175 7.50331 7.78060 7.80399 7.92108 8.46398 8.48146 9.32115 9.92813 10.67886 11.47514 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.004497 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.248309 B = 6224.826933 C = 8019.134535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.017 3.983 3 Si 0.900 3.100 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.242 4.242 8 H 0.064 0.936 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.167 3.833 14 H 0.033 0.967 15 C -0.103 4.103 16 H 0.068 0.932 17 C -0.116 4.116 18 C -0.136 4.136 19 C 0.105 3.895 20 N -0.588 5.588 21 C 0.559 3.441 22 O -0.501 6.501 23 C 0.062 3.938 24 N -0.426 5.426 25 C 0.080 3.920 26 C -0.128 4.128 27 C -0.117 4.117 28 C 0.103 3.897 29 F -0.108 7.108 30 C 0.126 3.874 31 H 0.254 0.746 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.170 0.830 45 H 0.149 0.851 46 H 0.153 0.847 47 H 0.123 0.877 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.733 -11.115 17.933 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.183 4.183 3 Si 0.730 3.270 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.370 4.370 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.059 3.941 14 H 0.050 0.950 15 C -0.125 4.125 16 H 0.087 0.913 17 C -0.154 4.154 18 C -0.174 4.174 19 C -0.019 4.019 20 N -0.321 5.321 21 C 0.343 3.657 22 O -0.375 6.375 23 C -0.077 4.077 24 N -0.137 5.137 25 C -0.079 4.079 26 C -0.148 4.148 27 C -0.143 4.143 28 C 0.080 3.920 29 F -0.086 7.086 30 C 0.005 3.995 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.113 0.887 44 H 0.187 0.813 45 H 0.167 0.833 46 H 0.171 0.829 47 H 0.141 0.859 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.089 -10.956 17.072 20.392 hybrid contribution 0.967 1.777 0.584 2.106 sum 3.057 -9.179 17.656 20.133 Atomic orbital electron populations 1.69871 1.05089 1.25525 1.53827 1.25094 0.95451 0.97739 1.00012 0.86410 0.78930 0.83846 0.77796 1.21244 1.21610 1.20910 1.18677 0.89798 0.82039 1.46522 0.91781 1.44354 1.16908 1.05051 1.64928 1.21345 0.88009 0.88791 0.97221 1.23015 0.98383 1.00017 0.97291 1.22680 0.98020 0.97278 0.98466 1.20950 0.95094 0.88077 0.89970 0.94955 1.21918 0.97953 0.95033 0.97572 0.91336 1.21643 1.01246 0.98291 0.94215 1.21967 0.97830 1.00642 0.96972 1.21998 0.96268 0.86133 0.97456 1.48021 1.66008 1.08912 1.09125 1.17691 0.79382 0.84219 0.84383 1.90956 1.45522 1.31743 1.69236 1.21628 0.99575 0.90301 0.96178 1.67891 1.14277 1.23534 1.08030 1.22976 0.96385 0.98819 0.89759 1.22245 0.97575 0.93088 1.01913 1.21705 1.00474 1.00548 0.91594 1.18685 0.98092 0.85206 0.90014 1.91646 1.87903 1.52228 1.76792 1.21830 0.96517 1.05870 0.75256 0.93568 0.94621 0.93528 0.92613 0.92576 0.92584 0.91737 0.92250 0.91908 0.92126 0.91406 0.91482 0.88711 0.81303 0.83343 0.82893 0.85901 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 11.24 55.49 0.62 -26.56 16 2 C 0.02 0.49 5.45 -17.43 -0.09 0.39 16 3 Si 0.90 23.40 29.55 -169.99 -5.02 18.38 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.24 -6.81 9.72 -15.06 -0.15 -6.96 16 8 H 0.06 1.80 7.83 -52.48 -0.41 1.39 16 9 N -0.59 -14.77 2.21 -162.57 -0.36 -15.13 16 10 C 0.17 4.14 5.38 -2.53 -0.01 4.12 16 11 C -0.15 -2.79 7.09 -24.45 -0.17 -2.96 16 12 C -0.13 -2.19 5.17 -24.76 -0.13 -2.32 16 13 C 0.17 3.41 3.00 -66.95 -0.20 3.21 16 14 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 15 C -0.10 -1.97 2.10 -90.50 -0.19 -2.16 16 16 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 17 C -0.12 -1.67 4.82 -26.69 -0.13 -1.80 16 18 C -0.14 -1.75 6.08 -26.61 -0.16 -1.91 16 19 C 0.10 1.46 5.94 -3.71 -0.02 1.44 16 20 N -0.59 -10.88 2.97 -173.83 -0.52 -11.39 16 21 C 0.56 11.35 7.35 -12.26 -0.09 11.26 16 22 O -0.50 -12.66 15.60 5.34 0.08 -12.58 16 23 C 0.06 0.99 5.98 -82.96 -0.50 0.50 16 24 N -0.43 -5.39 7.32 -9.76 -0.07 -5.46 16 25 C 0.08 0.67 11.18 -17.56 -0.20 0.47 16 26 C -0.13 -0.90 10.11 -39.34 -0.40 -1.29 16 27 C -0.12 -1.11 10.16 -39.23 -0.40 -1.51 16 28 C 0.10 1.49 7.27 -38.82 -0.28 1.21 16 29 F -0.11 -1.90 16.20 2.25 0.04 -1.86 16 30 C 0.13 2.62 5.25 -3.72 -0.02 2.60 16 31 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.04 0.95 7.74 -51.93 -0.40 0.55 16 33 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.08 5.46 -51.93 -0.28 0.80 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.85 6.79 -51.93 -0.35 0.50 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.10 1.23 4.70 -51.93 -0.24 0.98 16 44 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.15 0.47 8.06 -52.49 -0.42 0.04 16 46 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.12 3.30 6.43 -51.93 -0.33 2.97 16 48 H 0.06 1.19 6.23 -51.93 -0.32 0.87 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -34.53 377.28 -9.65 -44.18 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.97 Total: 0.46 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -3.14 Total: 4.29 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.32 Total: -58.55 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.53 -9.65 -44.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963381451.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.218 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds