Wall clock time and date at job start Wed Apr 1 2020 04:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00367 * 2 1 4 4 H 1.48506 * 109.47208 * 239.99927 * 3 2 1 5 5 H 1.48500 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47123 * 120.00216 * 3 2 1 7 7 C 1.38816 * 119.99448 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99544 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64738 * 28.33279 * 9 7 2 11 11 C 1.54910 * 104.83163 * 155.83467 * 10 9 7 12 12 C 1.55406 * 101.66663 * 36.92515 * 11 10 9 13 13 C 1.47024 * 125.64997 * 208.28908 * 9 7 2 14 14 H 1.08998 * 109.87781 * 300.67019 * 13 9 7 15 15 C 1.53001 * 109.87914 * 61.67662 * 13 9 7 16 16 H 1.08995 * 109.50119 * 293.18281 * 15 13 9 17 17 C 1.53046 * 109.49628 * 173.12159 * 15 13 9 18 18 C 1.53032 * 109.54116 * 178.68407 * 17 15 13 19 19 C 1.53195 * 109.31135 * 61.36068 * 18 17 15 20 20 N 1.46928 * 108.77668 * 305.36823 * 19 18 17 21 21 C 1.34777 * 120.62538 * 233.62993 * 20 19 18 22 22 O 1.21532 * 119.99725 * 180.02562 * 21 20 19 23 23 C 1.48001 * 120.00500 * 0.03314 * 21 20 19 24 24 N 1.32800 * 119.75235 * 321.97691 * 23 21 20 25 25 C 1.31432 * 121.66924 * 180.02562 * 24 23 21 26 26 C 1.38684 * 120.97799 * 359.96807 * 25 24 23 27 27 C 1.38447 * 119.39414 * 0.03160 * 26 25 24 28 28 C 1.38966 * 118.46644 * 359.71971 * 27 26 25 29 29 F 1.35105 * 120.50146 * 180.26305 * 28 27 26 30 30 C 1.46917 * 118.73882 * 53.60595 * 20 19 18 31 31 H 0.97002 * 119.99279 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.36470 * 274.67146 * 10 9 7 33 33 H 1.08997 * 110.36704 * 36.88759 * 10 9 7 34 34 H 1.08994 * 111.00255 * 155.08054 * 11 10 9 35 35 H 1.08998 * 111.00797 * 278.93525 * 11 10 9 36 36 H 1.09003 * 110.85244 * 206.30284 * 12 11 10 37 37 H 1.08999 * 110.69732 * 82.95017 * 12 11 10 38 38 H 1.09004 * 109.45787 * 58.65842 * 17 15 13 39 39 H 1.09000 * 109.45527 * 298.70674 * 17 15 13 40 40 H 1.09000 * 109.49470 * 301.41412 * 18 17 15 41 41 H 1.09000 * 109.52912 * 181.32946 * 18 17 15 42 42 H 1.08999 * 109.58637 * 65.15708 * 19 18 17 43 43 H 1.09003 * 109.58417 * 185.57799 * 19 18 17 44 44 H 1.07995 * 119.51050 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.30127 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.76802 * 179.97438 * 27 26 25 47 47 H 1.08999 * 109.58641 * 186.59966 * 30 20 19 48 48 H 1.09003 * 109.69870 * 66.24950 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.0176 -2.6047 -0.5686 11 6 -0.0752 -4.1204 -0.8836 12 6 0.7194 -4.7198 0.3099 13 6 1.8082 -3.6564 0.5652 14 1 2.7363 -3.9511 0.0756 15 6 2.0405 -3.5001 2.0694 16 1 2.8679 -2.8114 2.2401 17 6 2.3765 -4.8632 2.6786 18 6 2.6412 -4.7028 4.1773 19 6 1.3794 -4.1658 4.8601 20 7 0.9663 -2.9282 4.1843 21 6 0.7699 -1.7950 4.8869 22 8 0.4279 -0.7779 4.3164 23 6 0.9710 -1.7890 6.3532 24 7 0.6031 -2.8426 7.0731 25 6 0.7637 -2.8773 8.3771 26 6 1.3281 -1.8076 9.0556 27 6 1.7268 -0.6873 8.3466 28 6 1.5507 -0.6785 6.9682 29 9 1.9300 0.3912 6.2352 30 6 0.7719 -2.9495 2.7282 31 1 -0.4849 0.8401 0.0004 32 1 -0.7846 -2.3390 0.1589 33 1 -0.1424 -2.0211 -1.4807 34 1 -1.1042 -4.4796 -0.8883 35 1 0.4186 -4.3419 -1.8297 36 1 1.1692 -5.6743 0.0364 37 1 0.0769 -4.8312 1.1833 38 1 3.2650 -5.2685 2.1942 39 1 1.5389 -5.5444 2.5287 40 1 3.4628 -4.0026 4.3287 41 1 2.9036 -5.6698 4.6066 42 1 0.5819 -4.9053 4.7877 43 1 1.5922 -3.9562 5.9084 44 1 0.4516 -3.7520 8.9284 45 1 1.4545 -1.8476 10.1275 46 1 2.1685 0.1585 8.8525 47 1 0.5838 -1.9374 2.3699 48 1 -0.0756 -3.5885 2.4800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963381451.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:12 Heat of formation + Delta-G solvation = -29.696296 kcal Electronic energy + Delta-G solvation = -32413.095642 eV Core-core repulsion = 28189.500829 eV Total energy + Delta-G solvation = -4223.594813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.18920 -41.88849 -40.65661 -39.55438 -37.82378 -34.81558 -34.14793 -33.40574 -32.38386 -32.03205 -31.14786 -28.43119 -27.01060 -26.46045 -25.16080 -24.59800 -23.93179 -22.50725 -21.90708 -21.10949 -19.79536 -18.88214 -18.75636 -18.55270 -18.15595 -17.48642 -17.01956 -16.84784 -16.53135 -16.11381 -15.97721 -15.67925 -15.52917 -15.24760 -15.00805 -14.63909 -14.37024 -14.29223 -14.27719 -14.04782 -13.94998 -13.66398 -13.49691 -13.06807 -12.97305 -12.87050 -12.76695 -12.65768 -12.13242 -12.06021 -11.88960 -11.76164 -11.61018 -11.48886 -11.34278 -11.17946 -11.11781 -10.97379 -10.61611 -10.47308 -10.19188 -9.59922 -8.60025 -7.91605 -5.31209 -0.55504 -0.06533 1.31721 1.38928 1.41590 1.49884 1.83658 2.44470 2.48069 2.82910 3.07323 3.31192 3.51532 3.56385 3.65810 3.86815 3.93115 3.93339 4.11942 4.14537 4.18006 4.29711 4.31984 4.36811 4.41416 4.53381 4.62775 4.73994 4.78888 4.81568 4.86090 4.89835 4.95185 4.97646 5.06500 5.08614 5.17252 5.23939 5.30544 5.38608 5.42440 5.47663 5.56991 5.58919 5.64032 5.67285 5.80460 6.29996 6.32248 6.53760 7.01410 7.12420 7.80279 8.52558 9.20089 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.004497 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.248309 B = 6224.826933 C = 8019.134535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.040 4.040 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.061 0.939 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.133 4.133 12 C -0.111 4.111 13 C 0.157 3.843 14 H 0.037 0.963 15 C -0.093 4.093 16 H 0.026 0.974 17 C -0.107 4.107 18 C -0.130 4.130 19 C 0.100 3.900 20 N -0.589 5.589 21 C 0.545 3.455 22 O -0.578 6.578 23 C 0.031 3.969 24 N -0.440 5.440 25 C 0.091 3.909 26 C -0.093 4.093 27 C -0.108 4.108 28 C 0.065 3.935 29 F -0.142 7.142 30 C 0.139 3.861 31 H 0.244 0.756 32 H -0.002 1.002 33 H 0.008 0.992 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.219 0.781 45 H 0.207 0.793 46 H 0.182 0.818 47 H 0.051 0.949 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.939 -15.758 21.798 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.078 0.922 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.172 4.172 12 C -0.148 4.148 13 C 0.050 3.950 14 H 0.055 0.945 15 C -0.114 4.114 16 H 0.045 0.955 17 C -0.145 4.145 18 C -0.168 4.168 19 C -0.021 4.021 20 N -0.319 5.319 21 C 0.332 3.668 22 O -0.457 6.457 23 C -0.105 4.105 24 N -0.152 5.152 25 C -0.070 4.070 26 C -0.112 4.112 27 C -0.134 4.134 28 C 0.042 3.958 29 F -0.121 7.121 30 C 0.017 3.983 31 H 0.053 0.947 32 H 0.016 0.984 33 H 0.027 0.973 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.132 0.868 42 H 0.105 0.895 43 H 0.128 0.872 44 H 0.236 0.764 45 H 0.224 0.776 46 H 0.200 0.800 47 H 0.070 0.930 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.342 -15.674 20.934 26.364 hybrid contribution 0.604 3.129 -0.411 3.213 sum 3.946 -12.545 20.522 24.375 Atomic orbital electron populations 1.70054 1.06250 1.25081 1.56009 1.25739 0.96169 1.00598 1.01108 0.85584 0.77835 0.80654 0.77914 1.19111 1.22099 1.21877 1.18899 0.89882 0.83663 1.44457 0.92171 1.44569 1.16927 1.05744 1.65829 1.21138 0.86817 0.92634 0.94366 1.22885 1.00576 0.95126 0.98572 1.22664 0.96603 0.97626 0.97944 1.21238 0.96419 0.86872 0.90484 0.94522 1.21750 0.95313 0.97334 0.97005 0.95514 1.21604 1.02904 0.94854 0.95100 1.21973 0.96496 1.02430 0.95853 1.22360 0.97430 0.84220 0.98057 1.48196 1.65159 1.10392 1.08199 1.18565 0.77986 0.83480 0.86796 1.90892 1.49000 1.34353 1.71467 1.20894 1.03308 0.92644 0.93697 1.67805 1.14856 1.22354 1.10199 1.23933 0.94209 1.00653 0.88165 1.22912 0.93459 0.90607 1.04256 1.22138 0.99698 1.02609 0.88996 1.19248 1.00093 0.84339 0.92081 1.91550 1.88632 1.53812 1.78088 1.21377 0.97728 1.01832 0.77404 0.94735 0.98412 0.97320 0.90028 0.91378 0.88118 0.90949 0.90344 0.89616 0.93771 0.86795 0.89497 0.87220 0.76423 0.77646 0.80033 0.93032 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.26 11.24 21.65 0.24 -61.01 16 2 C -0.04 -2.52 5.45 84.86 0.46 -2.05 16 3 Si 0.95 51.58 29.55 68.60 2.03 53.61 16 4 H -0.27 -13.39 7.11 99.48 0.71 -12.69 16 5 H -0.29 -16.07 7.11 99.48 0.71 -15.36 16 6 H -0.29 -16.07 7.11 99.48 0.71 -15.36 16 7 C -0.24 -14.43 9.72 84.03 0.82 -13.62 16 8 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 9 N -0.61 -32.26 2.21 -668.25 -1.48 -33.73 16 10 C 0.18 9.01 5.38 86.86 0.47 9.48 16 11 C -0.13 -4.86 7.09 32.07 0.23 -4.63 16 12 C -0.11 -3.54 5.17 31.87 0.16 -3.38 16 13 C 0.16 6.42 3.00 45.34 0.14 6.56 16 14 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 15 C -0.09 -3.63 2.10 -10.72 -0.02 -3.65 16 16 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 17 C -0.11 -2.78 4.82 30.62 0.15 -2.63 16 18 C -0.13 -2.95 6.08 30.67 0.19 -2.76 16 19 C 0.10 2.62 5.94 86.36 0.51 3.14 16 20 N -0.59 -22.96 2.97 -822.16 -2.44 -25.40 16 21 C 0.54 24.21 7.35 86.83 0.64 24.84 16 22 O -0.58 -33.08 15.60 -3.82 -0.06 -33.14 16 23 C 0.03 1.02 5.98 41.91 0.25 1.27 16 24 N -0.44 -10.24 7.32 -184.79 -1.35 -11.60 16 25 C 0.09 1.05 11.18 84.86 0.95 2.00 16 26 C -0.09 -0.76 10.11 22.43 0.23 -0.54 16 27 C -0.11 -1.77 10.16 22.49 0.23 -1.54 16 28 C 0.07 1.97 7.27 22.76 0.17 2.14 16 29 F -0.14 -5.58 16.20 44.97 0.73 -4.85 16 30 C 0.14 6.18 5.25 86.36 0.45 6.64 16 31 H 0.24 15.95 8.31 -92.71 -0.77 15.17 16 32 H 0.00 -0.12 7.74 -2.39 -0.02 -0.14 16 33 H 0.01 0.48 7.85 -2.39 -0.02 0.46 16 34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.07 2.23 5.46 -2.39 -0.01 2.21 16 38 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.09 1.90 6.79 -2.39 -0.02 1.89 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 43 H 0.11 2.60 4.70 -2.39 -0.01 2.58 16 44 H 0.22 0.38 8.06 -2.91 -0.02 0.36 16 45 H 0.21 -0.50 8.06 -2.91 -0.02 -0.53 16 46 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 47 H 0.05 3.08 6.43 -2.39 -0.02 3.07 16 48 H 0.06 2.73 6.23 -2.39 -0.01 2.71 16 Total: -1.00 -93.25 377.28 4.65 -88.59 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 0.97 Total: 6.28 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 6.01 Total: 21.25 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -5.03 Total: -131.75 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.06 Total: -33.14 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.73 Total: -4.85 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.03 Total: 53.61 kcal Total: -93.25 4.65 -88.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963381451.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.897 kcal (2) G-P(sol) polarization free energy of solvation -93.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds