Wall clock time and date at job start Wed Apr 1 2020 04:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99966 * 2 1 4 4 H 1.48496 * 109.47421 * 274.98721 * 3 2 1 5 5 H 1.48494 * 109.47338 * 34.99302 * 3 2 1 6 6 H 1.48507 * 109.46680 * 154.98973 * 3 2 1 7 7 C 1.38814 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99915 * 187.03778 * 7 2 1 9 9 N 1.36936 * 120.00146 * 7.03943 * 7 2 1 10 10 C 1.47894 * 125.68891 * 174.76758 * 9 7 2 11 11 C 1.53894 * 104.06350 * 156.63526 * 10 9 7 12 12 H 1.09005 * 109.20532 * 282.73382 * 11 10 9 13 13 C 1.50735 * 112.51239 * 161.22635 * 11 10 9 14 14 C 1.52825 * 111.73785 * 295.23955 * 13 11 10 15 15 C 1.53332 * 108.09497 * 301.07450 * 14 13 11 16 16 H 1.09000 * 109.67920 * 304.39832 * 15 14 13 17 17 N 1.46502 * 109.67741 * 183.85648 * 15 14 13 18 18 C 1.34780 * 119.99766 * 85.00553 * 17 15 14 19 19 O 1.21284 * 119.99792 * 359.97438 * 18 17 15 20 20 C 1.50697 * 120.00091 * 180.02562 * 18 17 15 21 21 C 1.50699 * 109.47422 * 179.97438 * 20 18 17 22 22 N 1.31871 * 119.63732 * 89.99512 * 21 20 18 23 23 C 1.31844 * 121.75264 * 180.02562 * 22 21 20 24 24 C 1.38238 * 120.81840 * 0.02562 * 23 22 21 25 25 C 1.38591 * 119.18769 * 359.97438 * 24 23 22 26 26 C 1.38423 * 119.63611 * 269.72909 * 21 20 18 27 27 F 1.35099 * 120.44229 * 359.97438 * 26 21 20 28 28 C 1.51428 * 108.64150 * 63.79291 * 15 14 13 29 29 C 1.53003 * 111.69564 * 298.27805 * 28 15 14 30 30 H 1.08999 * 112.55668 * 285.54513 * 29 28 15 31 31 C 1.47174 * 125.64942 * 354.79369 * 9 7 2 32 32 H 0.97006 * 120.00147 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.49117 * 37.99338 * 10 9 7 34 34 H 1.09007 * 110.52670 * 275.28573 * 10 9 7 35 35 H 1.08997 * 109.02676 * 55.82063 * 13 11 10 36 36 H 1.09006 * 109.02870 * 174.73738 * 13 11 10 37 37 H 1.08994 * 109.74244 * 60.72642 * 14 13 11 38 38 H 1.09001 * 109.73743 * 181.38242 * 14 13 11 39 39 H 0.96991 * 120.00149 * 264.99772 * 17 15 14 40 40 H 1.09006 * 109.46867 * 299.99726 * 20 18 17 41 41 H 1.08999 * 109.47524 * 59.99535 * 20 18 17 42 42 H 1.07996 * 119.59408 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.40568 * 179.97438 * 24 23 22 44 44 H 1.08009 * 120.80004 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.43650 * 177.27852 * 28 15 14 46 46 H 1.09003 * 108.24131 * 58.47972 * 28 15 14 47 47 H 1.08998 * 109.96402 * 59.65484 * 31 9 7 48 48 H 1.08998 * 109.95784 * 298.44752 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4119 0.5920 7 6 2.0101 -1.2022 -0.0005 8 1 3.0840 -1.2059 0.1141 9 7 1.3332 -2.3835 -0.1464 10 6 1.9502 -3.7215 -0.2740 11 6 0.8454 -4.6884 0.1873 12 1 0.7864 -4.6724 1.2757 13 6 1.0849 -6.1023 -0.2771 14 6 1.0252 -6.2156 -1.7999 15 6 -0.3592 -5.7425 -2.2588 16 1 -1.1316 -6.3167 -1.7472 17 7 -0.4873 -5.9231 -3.7070 18 6 -0.8742 -7.1138 -4.2060 19 8 -1.1158 -8.0359 -3.4561 20 6 -1.0054 -7.2998 -5.6957 21 6 -1.4480 -8.7102 -5.9888 22 7 -2.7351 -8.9881 -6.0606 23 6 -3.1687 -10.2072 -6.3140 24 6 -2.2805 -11.2472 -6.5149 25 6 -0.9192 -10.9960 -6.4477 26 6 -0.4991 -9.6986 -6.1853 27 9 0.8181 -9.4063 -6.1163 28 6 -0.5107 -4.2771 -1.9084 29 6 -0.4252 -4.0449 -0.3985 30 1 -1.3269 -4.3626 0.1251 31 6 -0.1300 -2.5324 -0.2028 32 1 -0.4851 0.8401 -0.0004 33 1 2.8234 -3.8023 0.3734 34 1 2.2226 -3.9196 -1.3107 35 1 2.0674 -6.4271 0.0652 36 1 0.3249 -6.7524 0.1566 37 1 1.7957 -5.5871 -2.2464 38 1 1.1780 -7.2528 -2.0982 39 1 -0.2938 -5.1857 -4.3067 40 1 -1.7432 -6.5986 -6.0858 41 1 -0.0420 -7.1155 -6.1712 42 1 -4.2308 -10.3956 -6.3654 43 1 -2.6429 -12.2433 -6.7217 44 1 -0.2022 -11.7891 -6.6009 45 1 -1.4720 -3.9146 -2.2723 46 1 0.2889 -3.7240 -2.4012 47 1 -0.5298 -1.9635 -1.0421 48 1 -0.5756 -2.1837 0.7288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980173751.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:52 Heat of formation + Delta-G solvation = -29.321820 kcal Electronic energy + Delta-G solvation = -30521.148744 eV Core-core repulsion = 26297.570170 eV Total energy + Delta-G solvation = -4223.578575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.29705 -40.67553 -39.95906 -38.76813 -35.50224 -33.65904 -33.45410 -32.24859 -31.55345 -30.82289 -29.22702 -28.05030 -26.06477 -24.91055 -23.97817 -23.30794 -22.11141 -21.51368 -20.62222 -19.72971 -18.36558 -18.03277 -17.61354 -17.10741 -16.88608 -16.72963 -15.95084 -15.82543 -15.26986 -15.13024 -14.70606 -14.35556 -14.05753 -14.05089 -13.89518 -13.67540 -13.43991 -13.34900 -13.24162 -12.56096 -12.47267 -12.35692 -12.23747 -12.05611 -11.85737 -11.23675 -11.08662 -11.04447 -10.77163 -10.63850 -10.52100 -10.33416 -10.07192 -9.99165 -9.97888 -9.81721 -9.63657 -9.54694 -9.50026 -9.17788 -8.87140 -8.55737 -6.77923 -5.70017 -3.01353 0.52581 0.71448 2.60139 2.98014 3.40541 3.40937 3.46257 3.48140 3.64006 3.89009 4.18818 4.31336 4.51958 4.52512 4.70991 4.91885 4.97966 5.04067 5.06304 5.19188 5.28385 5.34813 5.38759 5.45953 5.50634 5.59279 5.60893 5.67124 5.74601 5.88608 5.91859 5.97819 6.08505 6.21660 6.27379 6.28598 6.36587 6.49715 6.52036 6.63427 6.64475 6.82399 6.92581 7.05623 7.47191 7.51392 7.58858 7.64831 7.84709 8.20382 8.27892 9.24559 9.85112 10.53084 11.42058 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.002113 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.812309 B =13248.162040 C =13437.281723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.140 3.860 11 C -0.099 4.099 12 H 0.068 0.932 13 C -0.099 4.099 14 C -0.124 4.124 15 C 0.147 3.853 16 H 0.084 0.916 17 N -0.721 5.721 18 C 0.523 3.477 19 O -0.537 6.537 20 C -0.100 4.100 21 C 0.129 3.871 22 N -0.448 5.448 23 C 0.093 3.907 24 C -0.147 4.147 25 C -0.108 4.108 26 C 0.061 3.939 27 F -0.127 7.127 28 C -0.112 4.112 29 C -0.105 4.105 30 H 0.075 0.925 31 C 0.184 3.816 32 H 0.251 0.749 33 H 0.034 0.966 34 H 0.021 0.979 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.401 0.599 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.165 0.835 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 -21.533 -14.569 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.334 5.334 10 C 0.014 3.986 11 C -0.118 4.118 12 H 0.087 0.913 13 C -0.138 4.138 14 C -0.163 4.163 15 C 0.043 3.957 16 H 0.102 0.898 17 N -0.371 5.371 18 C 0.307 3.693 19 O -0.414 6.414 20 C -0.140 4.140 21 C -0.011 4.011 22 N -0.156 5.156 23 C -0.064 4.064 24 C -0.167 4.167 25 C -0.135 4.135 26 C 0.039 3.961 27 F -0.105 7.105 28 C -0.150 4.150 29 C -0.125 4.125 30 H 0.093 0.907 31 C 0.059 3.941 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.235 0.765 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.182 0.818 43 H 0.163 0.837 44 H 0.165 0.835 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.921 -21.265 -13.863 25.857 hybrid contribution 1.389 0.618 -0.389 1.570 sum -3.532 -20.647 -14.252 25.335 Atomic orbital electron populations 1.69970 1.04851 1.24923 1.57128 1.24798 0.95689 0.97573 1.02480 0.86140 0.78688 0.83784 0.77442 1.21712 1.21851 1.20708 1.19069 0.91080 0.82664 1.42556 0.90552 1.44605 1.01629 1.01017 1.86116 1.21510 0.94137 0.85775 0.97167 1.21464 0.96744 0.93495 1.00131 0.91337 1.20846 1.01418 0.96697 0.94841 1.21928 0.96926 1.00899 0.96527 1.20822 0.97911 0.98003 0.78954 0.89809 1.46098 1.68973 1.13176 1.08868 1.20120 0.76635 0.82911 0.89588 1.90715 1.49641 1.40652 1.60376 1.20599 1.04728 0.93490 0.95196 1.20616 0.88557 0.94909 0.97043 1.67488 1.14829 1.22743 1.10545 1.22829 1.00886 0.87506 0.95200 1.22085 0.92646 1.01425 1.00512 1.21648 0.97514 0.95295 0.99017 1.18513 0.78853 0.94761 1.03933 1.91526 1.31449 1.93867 1.93702 1.21542 1.02457 0.93370 0.97651 1.22351 0.96935 0.99917 0.93310 0.90673 1.21459 0.84461 0.87525 1.00640 0.93834 0.94745 0.96114 0.92120 0.92369 0.91331 0.92170 0.76508 0.86198 0.86859 0.81811 0.83687 0.83454 0.91913 0.90908 0.93207 0.94453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 10.36 55.49 0.58 -26.34 16 2 C -0.01 -0.26 5.48 -17.43 -0.10 -0.36 16 3 Si 0.91 22.09 29.56 -169.99 -5.02 17.07 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.26 10.27 -15.06 -0.15 -6.41 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.61 -15.28 3.41 -169.56 -0.58 -15.85 16 10 C 0.14 2.86 6.17 -2.81 -0.02 2.84 16 11 C -0.10 -1.72 2.85 -90.77 -0.26 -1.98 16 12 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 13 C -0.10 -1.45 5.36 -27.96 -0.15 -1.60 16 14 C -0.12 -1.77 5.39 -26.65 -0.14 -1.91 16 15 C 0.15 2.09 2.38 -68.55 -0.16 1.93 16 16 H 0.08 1.32 7.61 -51.93 -0.40 0.93 16 17 N -0.72 -8.74 5.10 -54.41 -0.28 -9.01 16 18 C 0.52 6.85 7.79 -10.99 -0.09 6.77 16 19 O -0.54 -9.16 15.71 5.55 0.09 -9.07 16 20 C -0.10 -0.98 5.82 -29.04 -0.17 -1.15 16 21 C 0.13 1.45 5.28 -82.51 -0.44 1.01 16 22 N -0.45 -5.04 10.27 -9.42 -0.10 -5.13 16 23 C 0.09 0.76 11.18 -17.55 -0.20 0.57 16 24 C -0.15 -0.97 10.11 -39.45 -0.40 -1.37 16 25 C -0.11 -0.86 10.16 -39.22 -0.40 -1.26 16 26 C 0.06 0.64 7.27 -39.28 -0.29 0.36 16 27 F -0.13 -1.41 16.49 2.25 0.04 -1.37 16 28 C -0.11 -1.78 4.02 -27.52 -0.11 -1.89 16 29 C -0.11 -1.91 3.63 -88.85 -0.32 -2.23 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 C 0.18 4.36 4.67 -2.43 -0.01 4.34 16 32 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.42 6.07 -51.92 -0.32 0.11 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.99 6.74 -51.93 -0.35 0.64 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.40 3.89 8.60 -40.82 -0.35 3.53 16 40 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.11 0.87 7.62 -51.93 -0.40 0.47 16 42 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.15 0.47 8.06 -52.49 -0.42 0.04 16 44 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 1.27 7.16 -51.93 -0.37 0.89 16 47 H 0.05 1.30 6.90 -51.93 -0.36 0.94 16 48 H 0.04 1.00 7.61 -51.93 -0.40 0.60 16 LS Contribution 383.83 15.07 5.78 5.78 Total: -1.00 -34.24 383.83 -10.02 -44.26 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.13 Total: 2.02 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -3.40 Total: -2.35 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.38 Total: -56.34 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.24 -10.02 -44.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980173751.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.941 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds