Wall clock time and date at job start Wed Apr 1 2020 04:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99966 * 2 1 4 4 H 1.48496 * 109.47421 * 274.98721 * 3 2 1 5 5 H 1.48494 * 109.47338 * 34.99302 * 3 2 1 6 6 H 1.48507 * 109.46680 * 154.98973 * 3 2 1 7 7 C 1.38814 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99915 * 187.03778 * 7 2 1 9 9 N 1.36936 * 120.00146 * 7.03943 * 7 2 1 10 10 C 1.47894 * 125.68891 * 174.76758 * 9 7 2 11 11 C 1.53894 * 104.06350 * 156.63526 * 10 9 7 12 12 H 1.09005 * 109.20532 * 282.73382 * 11 10 9 13 13 C 1.50735 * 112.51239 * 161.22635 * 11 10 9 14 14 C 1.52825 * 111.73785 * 295.23955 * 13 11 10 15 15 C 1.53332 * 108.09497 * 301.07450 * 14 13 11 16 16 H 1.09000 * 109.67920 * 304.39832 * 15 14 13 17 17 N 1.46502 * 109.67741 * 183.85648 * 15 14 13 18 18 C 1.34780 * 119.99766 * 85.00553 * 17 15 14 19 19 O 1.21284 * 119.99792 * 359.97438 * 18 17 15 20 20 C 1.50697 * 120.00091 * 180.02562 * 18 17 15 21 21 C 1.50699 * 109.47422 * 179.97438 * 20 18 17 22 22 N 1.31871 * 119.63732 * 89.99512 * 21 20 18 23 23 C 1.31844 * 121.75264 * 180.02562 * 22 21 20 24 24 C 1.38238 * 120.81840 * 0.02562 * 23 22 21 25 25 C 1.38591 * 119.18769 * 359.97438 * 24 23 22 26 26 C 1.38423 * 119.63611 * 269.72909 * 21 20 18 27 27 F 1.35099 * 120.44229 * 359.97438 * 26 21 20 28 28 C 1.51428 * 108.64150 * 63.79291 * 15 14 13 29 29 C 1.53003 * 111.69564 * 298.27805 * 28 15 14 30 30 H 1.08999 * 112.55668 * 285.54513 * 29 28 15 31 31 C 1.47174 * 125.64942 * 354.79369 * 9 7 2 32 32 H 0.97006 * 120.00147 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.49117 * 37.99338 * 10 9 7 34 34 H 1.09007 * 110.52670 * 275.28573 * 10 9 7 35 35 H 1.08997 * 109.02676 * 55.82063 * 13 11 10 36 36 H 1.09006 * 109.02870 * 174.73738 * 13 11 10 37 37 H 1.08994 * 109.74244 * 60.72642 * 14 13 11 38 38 H 1.09001 * 109.73743 * 181.38242 * 14 13 11 39 39 H 0.96991 * 120.00149 * 264.99772 * 17 15 14 40 40 H 1.09006 * 109.46867 * 299.99726 * 20 18 17 41 41 H 1.08999 * 109.47524 * 59.99535 * 20 18 17 42 42 H 1.07996 * 119.59408 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.40568 * 179.97438 * 24 23 22 44 44 H 1.08009 * 120.80004 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.43650 * 177.27852 * 28 15 14 46 46 H 1.09003 * 108.24131 * 58.47972 * 28 15 14 47 47 H 1.08998 * 109.96402 * 59.65484 * 31 9 7 48 48 H 1.08998 * 109.95784 * 298.44752 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4119 0.5920 7 6 2.0101 -1.2022 -0.0005 8 1 3.0840 -1.2059 0.1141 9 7 1.3332 -2.3835 -0.1464 10 6 1.9502 -3.7215 -0.2740 11 6 0.8454 -4.6884 0.1873 12 1 0.7864 -4.6724 1.2757 13 6 1.0849 -6.1023 -0.2771 14 6 1.0252 -6.2156 -1.7999 15 6 -0.3592 -5.7425 -2.2588 16 1 -1.1316 -6.3167 -1.7472 17 7 -0.4873 -5.9231 -3.7070 18 6 -0.8742 -7.1138 -4.2060 19 8 -1.1158 -8.0359 -3.4561 20 6 -1.0054 -7.2998 -5.6957 21 6 -1.4480 -8.7102 -5.9888 22 7 -2.7351 -8.9881 -6.0606 23 6 -3.1687 -10.2072 -6.3140 24 6 -2.2805 -11.2472 -6.5149 25 6 -0.9192 -10.9960 -6.4477 26 6 -0.4991 -9.6986 -6.1853 27 9 0.8181 -9.4063 -6.1163 28 6 -0.5107 -4.2771 -1.9084 29 6 -0.4252 -4.0449 -0.3985 30 1 -1.3269 -4.3626 0.1251 31 6 -0.1300 -2.5324 -0.2028 32 1 -0.4851 0.8401 -0.0004 33 1 2.8234 -3.8023 0.3734 34 1 2.2226 -3.9196 -1.3107 35 1 2.0674 -6.4271 0.0652 36 1 0.3249 -6.7524 0.1566 37 1 1.7957 -5.5871 -2.2464 38 1 1.1780 -7.2528 -2.0982 39 1 -0.2938 -5.1857 -4.3067 40 1 -1.7432 -6.5986 -6.0858 41 1 -0.0420 -7.1155 -6.1712 42 1 -4.2308 -10.3956 -6.3654 43 1 -2.6429 -12.2433 -6.7217 44 1 -0.2022 -11.7891 -6.6009 45 1 -1.4720 -3.9146 -2.2723 46 1 0.2889 -3.7240 -2.4012 47 1 -0.5298 -1.9635 -1.0421 48 1 -0.5756 -2.1837 0.7288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980173751.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:51 Heat of formation + Delta-G solvation = -51.167434 kcal Electronic energy + Delta-G solvation = -30522.096041 eV Core-core repulsion = 26297.570170 eV Total energy + Delta-G solvation = -4224.525872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.04156 -41.57705 -41.01862 -39.99954 -36.96732 -35.08019 -34.26654 -33.31690 -32.88395 -32.24755 -30.62881 -29.04979 -27.65896 -26.77433 -24.63057 -24.11165 -23.58700 -22.69477 -21.98611 -21.18564 -19.72862 -18.76717 -18.72383 -18.29734 -18.08106 -17.62613 -16.97349 -16.74402 -16.70798 -16.52231 -16.14600 -15.67517 -15.06659 -14.99061 -14.90694 -14.86589 -14.62481 -14.18874 -14.09275 -14.08251 -13.90215 -13.76215 -13.40066 -13.16430 -12.97346 -12.90586 -12.85736 -12.63773 -12.45593 -12.16557 -12.08448 -11.75402 -11.71970 -11.40239 -11.16757 -11.02019 -10.98326 -10.77224 -10.65595 -10.61041 -10.01400 -9.86320 -8.83755 -7.83782 -5.17007 -0.11625 0.10481 1.46103 1.47450 1.56380 1.60266 2.09234 2.50735 2.68591 2.99319 3.23106 3.34267 3.56191 3.65985 3.67127 3.74974 3.81015 3.85677 3.99589 4.02965 4.15816 4.25316 4.33308 4.34764 4.40990 4.51357 4.56884 4.58746 4.61956 4.71642 4.76455 4.78917 4.92536 4.94415 5.00255 5.02719 5.10382 5.21336 5.25943 5.31750 5.42968 5.50219 5.53199 5.57829 5.63465 5.72324 5.81644 6.21740 6.54067 6.83832 7.12762 7.21993 7.80359 8.46704 9.26890 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.002113 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.812309 B =13248.162040 C =13437.281723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.975 3.025 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.628 5.628 10 C 0.137 3.863 11 C -0.085 4.085 12 H 0.062 0.938 13 C -0.092 4.092 14 C -0.117 4.117 15 C 0.157 3.843 16 H 0.073 0.927 17 N -0.713 5.713 18 C 0.523 3.477 19 O -0.578 6.578 20 C -0.095 4.095 21 C 0.103 3.897 22 N -0.479 5.479 23 C 0.083 3.917 24 C -0.134 4.134 25 C -0.111 4.111 26 C 0.036 3.964 27 F -0.137 7.137 28 C -0.099 4.099 29 C -0.094 4.094 30 H 0.089 0.911 31 C 0.194 3.806 32 H 0.246 0.754 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.414 0.586 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.191 0.809 43 H 0.185 0.815 44 H 0.172 0.828 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.019 0.981 48 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 -23.726 -15.856 28.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.804 3.196 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.368 4.368 8 H 0.098 0.902 9 N -0.354 5.354 10 C 0.012 3.988 11 C -0.105 4.105 12 H 0.081 0.919 13 C -0.131 4.131 14 C -0.156 4.156 15 C 0.053 3.947 16 H 0.092 0.908 17 N -0.364 5.364 18 C 0.310 3.690 19 O -0.458 6.458 20 C -0.135 4.135 21 C -0.036 4.036 22 N -0.187 5.187 23 C -0.075 4.075 24 C -0.153 4.153 25 C -0.137 4.137 26 C 0.015 3.985 27 F -0.115 7.115 28 C -0.137 4.137 29 C -0.114 4.114 30 H 0.107 0.893 31 C 0.069 3.931 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.250 0.750 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.208 0.792 43 H 0.202 0.798 44 H 0.189 0.811 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.037 0.963 48 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -4.509 -23.464 -15.173 28.304 hybrid contribution 1.235 1.231 0.009 1.744 sum -3.274 -22.232 -15.163 27.109 Atomic orbital electron populations 1.70190 1.06231 1.25137 1.58331 1.25621 0.96571 1.00863 1.02899 0.85104 0.77815 0.79452 0.77265 1.21371 1.22351 1.19381 1.19448 0.91549 0.83998 1.41801 0.90217 1.44904 1.02445 1.02171 1.85894 1.21692 0.94967 0.84304 0.97809 1.21369 0.94793 0.94576 0.99717 0.91927 1.20791 1.02780 0.94453 0.95053 1.21860 0.96607 1.00868 0.96259 1.20547 0.97778 0.96137 0.80265 0.90839 1.45981 1.68592 1.13660 1.08179 1.20641 0.75421 0.82201 0.90781 1.90687 1.51473 1.41955 1.61639 1.20624 1.06303 0.93850 0.92679 1.20765 0.88969 0.95527 0.98291 1.67482 1.14971 1.24539 1.11747 1.23436 1.02639 0.87101 0.94305 1.22518 0.91765 1.02742 0.98295 1.22058 0.98812 0.94867 0.98013 1.18800 0.78468 0.95941 1.05325 1.91490 1.32017 1.94061 1.93977 1.21333 1.02121 0.94525 0.95710 1.22253 0.98035 0.95758 0.95328 0.89262 1.21198 0.83744 0.90943 0.97233 0.94491 0.94612 0.95025 0.90514 0.91181 0.91419 0.92016 0.74991 0.84587 0.84899 0.79188 0.79780 0.81073 0.91556 0.92367 0.96325 0.98546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.47 10.36 21.65 0.22 -57.24 16 2 C -0.07 -3.82 5.48 84.86 0.46 -3.35 16 3 Si 0.97 46.08 29.56 68.60 2.03 48.10 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.24 -13.46 10.27 84.03 0.86 -12.60 16 8 H 0.08 4.32 7.84 -2.91 -0.02 4.30 16 9 N -0.63 -32.18 3.41 -690.36 -2.35 -34.54 16 10 C 0.14 5.51 6.17 86.41 0.53 6.05 16 11 C -0.09 -2.88 2.85 -10.89 -0.03 -2.91 16 12 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 13 C -0.09 -2.48 5.36 29.80 0.16 -2.32 16 14 C -0.12 -3.12 5.39 30.65 0.17 -2.96 16 15 C 0.16 4.28 2.38 44.59 0.11 4.39 16 16 H 0.07 2.23 7.61 -2.39 -0.02 2.21 16 17 N -0.71 -16.46 5.10 -444.45 -2.26 -18.72 16 18 C 0.52 13.25 7.79 87.66 0.68 13.94 16 19 O -0.58 -19.43 15.71 -3.04 -0.05 -19.47 16 20 C -0.09 -1.77 5.82 29.10 0.17 -1.60 16 21 C 0.10 2.25 5.28 42.60 0.22 2.47 16 22 N -0.48 -10.28 10.27 -183.72 -1.89 -12.17 16 23 C 0.08 1.18 11.18 84.69 0.95 2.13 16 24 C -0.13 -1.38 10.11 22.35 0.23 -1.15 16 25 C -0.11 -1.54 10.16 22.51 0.23 -1.31 16 26 C 0.04 0.73 7.27 22.47 0.16 0.89 16 27 F -0.14 -2.96 16.49 44.97 0.74 -2.22 16 28 C -0.10 -3.09 4.02 30.08 0.12 -2.96 16 29 C -0.09 -3.40 3.63 -9.65 -0.04 -3.43 16 30 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 31 C 0.19 9.53 4.67 87.06 0.41 9.93 16 32 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.03 1.23 6.07 -2.38 -0.01 1.22 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.07 1.83 6.74 -2.39 -0.02 1.81 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.41 7.46 8.60 -92.71 -0.80 6.66 16 40 H 0.14 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.13 1.88 7.62 -2.39 -0.02 1.86 16 42 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 44 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.06 2.01 7.16 -2.39 -0.02 1.99 16 47 H 0.02 1.02 6.90 -2.39 -0.02 1.00 16 48 H 0.00 -0.21 7.61 -2.39 -0.02 -0.23 16 Total: -1.00 -76.97 383.83 2.02 -74.95 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.19 Total: 16.12 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 5.40 Total: 5.19 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -6.28 Total: -122.67 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.05 Total: -19.47 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.74 Total: -2.22 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -76.97 2.02 -74.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980173751.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.781 kcal (2) G-P(sol) polarization free energy of solvation -76.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds