Wall clock time and date at job start Wed Apr 1 2020 04:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99736 * 2 1 4 4 H 1.48499 * 109.47181 * 239.99977 * 3 2 1 5 5 H 1.48506 * 109.47048 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47314 * 119.99722 * 3 2 1 7 7 C 1.38810 * 120.00415 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99924 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99792 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00056 * 180.02562 * 9 7 2 11 11 H 1.09002 * 108.17665 * 37.85939 * 10 9 7 12 12 C 1.51488 * 108.27577 * 280.90171 * 10 9 7 13 13 C 1.52666 * 110.82226 * 191.66893 * 12 10 9 14 14 C 1.53270 * 109.24367 * 59.76865 * 13 12 10 15 15 C 1.52902 * 109.46343 * 295.97355 * 14 13 12 16 16 H 1.08998 * 111.18070 * 288.67614 * 15 14 13 17 17 C 1.54796 * 107.41394 * 166.64311 * 15 14 13 18 18 N 1.46938 * 107.28313 * 262.34304 * 17 15 14 19 19 C 1.34775 * 125.40817 * 178.41934 * 18 17 15 20 20 O 1.21282 * 120.00707 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.99789 * 0.02598 * 19 18 17 22 22 C 1.50701 * 109.47314 * 179.97438 * 21 19 18 23 23 C 1.38238 * 119.59046 * 124.99763 * 22 21 19 24 24 C 1.38590 * 119.18914 * 180.02562 * 23 22 21 25 25 C 1.38878 * 118.39973 * 0.02562 * 24 23 22 26 26 F 1.35104 * 120.44439 * 180.02562 * 25 24 23 27 27 C 1.38426 * 119.11245 * 0.27044 * 25 24 23 28 28 N 1.31850 * 119.58901 * 305.02300 * 22 21 19 29 29 C 1.47236 * 109.19214 * 358.68472 * 18 17 15 30 30 C 1.49573 * 108.28006 * 154.99495 * 10 9 7 31 31 H 1.08995 * 107.99451 * 281.13319 * 30 10 9 32 32 H 0.97004 * 120.00645 * 0.02562 * 1 2 3 33 33 H 0.96995 * 120.00015 * 359.97438 * 9 7 2 34 34 H 1.08997 * 109.20805 * 312.01959 * 12 10 9 35 35 H 1.09004 * 109.20840 * 71.37398 * 12 10 9 36 36 H 1.09000 * 109.62091 * 179.76634 * 13 12 10 37 37 H 1.08996 * 109.62330 * 300.13333 * 13 12 10 38 38 H 1.09000 * 110.18068 * 175.58309 * 14 13 12 39 39 H 1.08996 * 108.90304 * 55.58850 * 14 13 12 40 40 H 1.09000 * 109.88442 * 142.92428 * 17 15 14 41 41 H 1.09003 * 110.00901 * 21.83206 * 17 15 14 42 42 H 1.09000 * 109.47143 * 59.99834 * 21 19 18 43 43 H 1.08998 * 109.47013 * 299.99771 * 21 19 18 44 44 H 1.07999 * 120.40630 * 0.02562 * 23 22 21 45 45 H 1.07997 * 120.79933 * 179.97438 * 24 23 22 46 46 H 1.08006 * 119.63549 * 179.73132 * 27 25 24 47 47 H 1.09002 * 110.23987 * 100.19976 * 29 18 17 48 48 H 1.08996 * 110.24624 * 222.19593 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1037 1.6966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 2.9358 -3.5421 0.6379 12 6 2.5324 -3.9328 -1.4103 13 6 3.0483 -5.3638 -1.5396 14 6 1.9206 -6.3409 -1.1894 15 6 1.5256 -6.1588 0.2765 16 1 2.3001 -6.5383 0.9431 17 6 0.1847 -6.9019 0.4907 18 7 -0.8880 -5.9018 0.3998 19 6 -2.2069 -6.1597 0.5020 20 8 -3.0105 -5.2559 0.4112 21 6 -2.6831 -7.5714 0.7290 22 6 -4.1881 -7.5876 0.8061 23 6 -4.9058 -8.4175 -0.0348 24 6 -6.2895 -8.4254 0.0428 25 6 -6.9039 -7.5924 0.9688 26 9 -8.2501 -7.5674 1.0798 27 6 -6.1187 -6.7844 1.7729 28 7 -4.8039 -6.8096 1.6743 29 6 -0.2937 -4.5739 0.1731 30 6 1.1776 -4.7064 0.6018 31 1 1.2067 -4.5911 1.6852 32 1 -0.4851 0.8400 -0.0004 33 1 0.3557 -2.3881 0.0005 34 1 1.7029 -3.7867 -2.1022 35 1 3.3349 -3.2390 -1.6612 36 1 3.3801 -5.5423 -2.5624 37 1 3.8810 -5.5161 -0.8529 38 1 2.2486 -7.3676 -1.3518 39 1 1.0609 -6.1306 -1.8255 40 1 0.1730 -7.3694 1.4753 41 1 0.0509 -7.6600 -0.2811 42 1 -2.2678 -7.9492 1.6633 43 1 -2.3545 -8.2029 -0.0964 44 1 -4.3945 -9.0521 -0.7436 45 1 -6.8759 -9.0632 -0.6019 46 1 -6.5878 -6.1301 2.4929 47 1 -0.3592 -4.3065 -0.8816 48 1 -0.7978 -3.8256 0.7847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992739068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:46 Heat of formation + Delta-G solvation = -32.242174 kcal Electronic energy + Delta-G solvation = -30526.390103 eV Core-core repulsion = 26302.684892 eV Total energy + Delta-G solvation = -4223.705211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.21670 -40.75953 -40.16280 -38.36948 -35.49222 -33.94058 -33.02439 -32.74541 -31.62589 -30.77109 -28.99803 -28.07035 -26.67658 -24.55546 -24.16380 -23.54262 -22.55166 -21.61063 -20.87310 -19.32054 -18.30683 -17.90250 -17.66341 -17.18386 -16.76341 -16.45372 -16.01657 -15.88962 -15.17165 -15.01624 -14.73411 -14.35166 -14.24234 -13.93492 -13.73383 -13.69346 -13.42265 -13.34856 -13.12278 -12.91445 -12.73816 -12.41334 -12.36556 -12.15869 -11.85193 -11.83709 -11.25430 -10.99604 -10.94989 -10.80946 -10.73788 -10.26703 -10.21018 -10.16692 -9.89872 -9.81426 -9.67272 -9.60821 -9.50813 -9.06456 -8.83246 -8.40100 -6.92897 -5.71576 -3.01688 0.61378 0.85119 2.80175 3.01978 3.44545 3.46331 3.50589 3.52287 3.71641 4.00885 4.26313 4.44780 4.47971 4.54777 4.57085 4.66002 4.80534 4.90899 5.03032 5.07991 5.21644 5.27176 5.35034 5.39729 5.44177 5.47814 5.55074 5.60093 5.63826 5.68052 5.76930 5.77755 5.85085 5.96303 6.07214 6.14105 6.29776 6.32083 6.34665 6.41233 6.45946 6.55747 6.63944 6.76073 6.93996 7.17930 7.64570 7.70053 7.73033 8.35478 8.46064 9.56941 10.13494 10.47467 11.50500 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.002613 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.215314 B =10711.577064 C =12654.977183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.191 3.809 11 H 0.042 0.958 12 C -0.129 4.129 13 C -0.117 4.117 14 C -0.110 4.110 15 C -0.087 4.087 16 H 0.091 0.909 17 C 0.101 3.899 18 N -0.618 5.618 19 C 0.529 3.471 20 O -0.517 6.517 21 C -0.087 4.087 22 C 0.135 3.865 23 C -0.138 4.138 24 C -0.109 4.109 25 C 0.041 3.959 26 F -0.132 7.132 27 C 0.084 3.916 28 N -0.426 5.426 29 C 0.120 3.880 30 C -0.088 4.088 31 H 0.070 0.930 32 H 0.256 0.744 33 H 0.385 0.615 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.168 0.832 47 H 0.069 0.931 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.808 -24.541 0.040 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.081 3.919 11 H 0.060 0.940 12 C -0.170 4.170 13 C -0.155 4.155 14 C -0.148 4.148 15 C -0.106 4.106 16 H 0.109 0.891 17 C -0.022 4.022 18 N -0.353 5.353 19 C 0.315 3.685 20 O -0.392 6.392 21 C -0.127 4.127 22 C -0.003 4.003 23 C -0.158 4.158 24 C -0.136 4.136 25 C 0.019 3.981 26 F -0.111 7.111 27 C -0.075 4.075 28 N -0.134 5.134 29 C -0.002 4.002 30 C -0.107 4.107 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.221 0.779 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.163 0.837 45 H 0.165 0.835 46 H 0.185 0.815 47 H 0.088 0.912 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.793 -23.348 0.579 23.842 hybrid contribution -0.594 0.453 -0.587 0.950 sum -5.387 -22.894 -0.008 23.520 Atomic orbital electron populations 1.69652 1.05045 1.25806 1.57292 1.24744 0.95460 0.97626 1.02985 0.86307 0.78518 0.83809 0.77750 1.21349 1.21753 1.21334 1.19161 0.90895 0.84130 1.43056 0.91276 1.42685 1.05897 0.99644 1.89008 1.19010 0.93560 0.85648 0.93640 0.93980 1.21865 1.00899 0.94164 1.00042 1.21500 0.97516 0.96063 1.00427 1.21633 0.99307 0.98743 0.95078 1.21845 0.95471 0.95400 0.97889 0.89115 1.22305 0.87311 0.91617 1.00974 1.48434 1.04763 1.10050 1.72047 1.19768 0.80888 0.90334 0.77483 1.90790 1.52746 1.46761 1.48858 1.20586 0.90391 0.96486 1.05254 1.20695 0.95560 0.91946 0.92118 1.21851 0.93461 1.00447 1.00030 1.21589 0.95418 0.98770 0.97816 1.18869 0.78119 1.00905 1.00160 1.91520 1.28777 1.95533 1.95265 1.22947 0.89235 0.97175 0.98157 1.67537 1.09280 1.17126 1.19444 1.21980 0.92633 0.83779 1.01828 1.21142 0.94404 0.93779 1.01419 0.91137 0.93408 0.77920 0.92406 0.92130 0.92716 0.92423 0.92193 0.91963 0.91751 0.91382 0.86931 0.87292 0.83699 0.83508 0.81525 0.91242 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.58 13.06 55.49 0.72 -27.85 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.62 9.79 -15.06 -0.15 -6.77 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -17.90 4.97 -55.84 -0.28 -18.18 16 10 C 0.19 3.59 2.57 -70.39 -0.18 3.41 16 11 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 12 C -0.13 -2.20 5.33 -27.67 -0.15 -2.35 16 13 C -0.12 -1.46 5.92 -26.76 -0.16 -1.62 16 14 C -0.11 -1.19 4.87 -26.64 -0.13 -1.32 16 15 C -0.09 -0.97 3.28 -89.80 -0.29 -1.26 16 16 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 17 C 0.10 1.01 5.93 -2.86 -0.02 0.99 16 18 N -0.62 -8.73 3.33 -171.12 -0.57 -9.30 16 19 C 0.53 7.96 7.77 -10.98 -0.09 7.88 16 20 O -0.52 -10.45 15.63 5.56 0.09 -10.36 16 21 C -0.09 -0.85 5.27 -29.03 -0.15 -1.01 16 22 C 0.14 1.55 5.76 -82.58 -0.48 1.07 16 23 C -0.14 -1.18 9.71 -39.45 -0.38 -1.57 16 24 C -0.11 -0.94 10.16 -39.21 -0.40 -1.34 16 25 C 0.04 0.43 7.35 -39.28 -0.29 0.14 16 26 F -0.13 -1.39 17.28 2.25 0.04 -1.35 16 27 C 0.08 0.99 11.17 -17.47 -0.20 0.80 16 28 N -0.43 -5.89 9.22 -9.41 -0.09 -5.98 16 29 C 0.12 2.10 4.75 -3.21 -0.02 2.08 16 30 C -0.09 -1.37 2.43 -91.96 -0.22 -1.59 16 31 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 33 H 0.39 10.17 5.67 -40.82 -0.23 9.94 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.76 7.99 -51.93 -0.42 0.34 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.52 7.70 -51.93 -0.40 0.12 16 42 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.11 0.68 7.87 -51.93 -0.41 0.27 16 44 H 0.15 0.75 7.95 -52.49 -0.42 0.33 16 45 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 46 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 47 H 0.07 1.33 8.06 -51.93 -0.42 0.91 16 48 H 0.08 1.77 7.53 -51.93 -0.39 1.38 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -35.05 388.29 -9.94 -44.99 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.30 Total: 7.54 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -3.39 Total: -2.90 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.21 Total: -61.31 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.05 -9.94 -44.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992739068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.751 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds