Wall clock time and date at job start Wed Apr 1 2020 04:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99736 * 2 1 4 4 H 1.48499 * 109.47181 * 239.99977 * 3 2 1 5 5 H 1.48506 * 109.47048 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47314 * 119.99722 * 3 2 1 7 7 C 1.38810 * 120.00415 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99924 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99792 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00056 * 180.02562 * 9 7 2 11 11 H 1.09002 * 108.17665 * 37.85939 * 10 9 7 12 12 C 1.51488 * 108.27577 * 280.90171 * 10 9 7 13 13 C 1.52666 * 110.82226 * 191.66893 * 12 10 9 14 14 C 1.53270 * 109.24367 * 59.76865 * 13 12 10 15 15 C 1.52902 * 109.46343 * 295.97355 * 14 13 12 16 16 H 1.08998 * 111.18070 * 288.67614 * 15 14 13 17 17 C 1.54796 * 107.41394 * 166.64311 * 15 14 13 18 18 N 1.46938 * 107.28313 * 262.34304 * 17 15 14 19 19 C 1.34775 * 125.40817 * 178.41934 * 18 17 15 20 20 O 1.21282 * 120.00707 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.99789 * 0.02598 * 19 18 17 22 22 C 1.50701 * 109.47314 * 179.97438 * 21 19 18 23 23 C 1.38238 * 119.59046 * 124.99763 * 22 21 19 24 24 C 1.38590 * 119.18914 * 180.02562 * 23 22 21 25 25 C 1.38878 * 118.39973 * 0.02562 * 24 23 22 26 26 F 1.35104 * 120.44439 * 180.02562 * 25 24 23 27 27 C 1.38426 * 119.11245 * 0.27044 * 25 24 23 28 28 N 1.31850 * 119.58901 * 305.02300 * 22 21 19 29 29 C 1.47236 * 109.19214 * 358.68472 * 18 17 15 30 30 C 1.49573 * 108.28006 * 154.99495 * 10 9 7 31 31 H 1.08995 * 107.99451 * 281.13319 * 30 10 9 32 32 H 0.97004 * 120.00645 * 0.02562 * 1 2 3 33 33 H 0.96995 * 120.00015 * 359.97438 * 9 7 2 34 34 H 1.08997 * 109.20805 * 312.01959 * 12 10 9 35 35 H 1.09004 * 109.20840 * 71.37398 * 12 10 9 36 36 H 1.09000 * 109.62091 * 179.76634 * 13 12 10 37 37 H 1.08996 * 109.62330 * 300.13333 * 13 12 10 38 38 H 1.09000 * 110.18068 * 175.58309 * 14 13 12 39 39 H 1.08996 * 108.90304 * 55.58850 * 14 13 12 40 40 H 1.09000 * 109.88442 * 142.92428 * 17 15 14 41 41 H 1.09003 * 110.00901 * 21.83206 * 17 15 14 42 42 H 1.09000 * 109.47143 * 59.99834 * 21 19 18 43 43 H 1.08998 * 109.47013 * 299.99771 * 21 19 18 44 44 H 1.07999 * 120.40630 * 0.02562 * 23 22 21 45 45 H 1.07997 * 120.79933 * 179.97438 * 24 23 22 46 46 H 1.08006 * 119.63549 * 179.73132 * 27 25 24 47 47 H 1.09002 * 110.23987 * 100.19976 * 29 18 17 48 48 H 1.08996 * 110.24624 * 222.19593 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1037 1.6966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 2.9358 -3.5421 0.6379 12 6 2.5324 -3.9328 -1.4103 13 6 3.0483 -5.3638 -1.5396 14 6 1.9206 -6.3409 -1.1894 15 6 1.5256 -6.1588 0.2765 16 1 2.3001 -6.5383 0.9431 17 6 0.1847 -6.9019 0.4907 18 7 -0.8880 -5.9018 0.3998 19 6 -2.2069 -6.1597 0.5020 20 8 -3.0105 -5.2559 0.4112 21 6 -2.6831 -7.5714 0.7290 22 6 -4.1881 -7.5876 0.8061 23 6 -4.9058 -8.4175 -0.0348 24 6 -6.2895 -8.4254 0.0428 25 6 -6.9039 -7.5924 0.9688 26 9 -8.2501 -7.5674 1.0798 27 6 -6.1187 -6.7844 1.7729 28 7 -4.8039 -6.8096 1.6743 29 6 -0.2937 -4.5739 0.1731 30 6 1.1776 -4.7064 0.6018 31 1 1.2067 -4.5911 1.6852 32 1 -0.4851 0.8400 -0.0004 33 1 0.3557 -2.3881 0.0005 34 1 1.7029 -3.7867 -2.1022 35 1 3.3349 -3.2390 -1.6612 36 1 3.3801 -5.5423 -2.5624 37 1 3.8810 -5.5161 -0.8529 38 1 2.2486 -7.3676 -1.3518 39 1 1.0609 -6.1306 -1.8255 40 1 0.1730 -7.3694 1.4753 41 1 0.0509 -7.6600 -0.2811 42 1 -2.2678 -7.9492 1.6633 43 1 -2.3545 -8.2029 -0.0964 44 1 -4.3945 -9.0521 -0.7436 45 1 -6.8759 -9.0632 -0.6019 46 1 -6.5878 -6.1301 2.4929 47 1 -0.3592 -4.3065 -0.8816 48 1 -0.7978 -3.8256 0.7847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992739068.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:45 Heat of formation + Delta-G solvation = -55.835330 kcal Electronic energy + Delta-G solvation = -30527.413179 eV Core-core repulsion = 26302.684892 eV Total energy + Delta-G solvation = -4224.728287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.01726 -41.78468 -41.10753 -39.57683 -36.95396 -35.45503 -33.88836 -33.48226 -33.40424 -31.91666 -30.51404 -29.12174 -27.87438 -25.93528 -25.28674 -24.90038 -23.41481 -22.76912 -22.11449 -20.45842 -19.63119 -19.06387 -18.64797 -18.40456 -17.92372 -17.42255 -17.05576 -16.83080 -16.65561 -16.25744 -16.04966 -15.48888 -15.28243 -15.04848 -14.94483 -14.83746 -14.67775 -14.40122 -14.12628 -14.03906 -13.90020 -13.63066 -13.43537 -13.14995 -13.09400 -12.91347 -12.78647 -12.75293 -12.39282 -12.28798 -12.11205 -11.94396 -11.86438 -11.26380 -11.16771 -10.98026 -10.95570 -10.89842 -10.69636 -10.51075 -9.86163 -9.57970 -9.00367 -7.93887 -5.23290 -0.15392 0.14418 1.43418 1.47182 1.53344 1.69953 1.98199 2.54665 2.63249 2.96569 3.26368 3.38650 3.44069 3.55185 3.60889 3.76364 3.79347 3.83875 3.94220 4.16861 4.22962 4.31463 4.32858 4.35263 4.44275 4.47333 4.53821 4.61737 4.68881 4.71867 4.75769 4.85951 4.87360 4.88056 4.94004 4.96880 4.99622 5.14361 5.23748 5.30473 5.34611 5.40521 5.48640 5.53649 5.60838 5.63248 5.76312 6.27537 6.61548 6.89137 7.24296 7.32596 8.10888 8.31399 9.29453 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.002613 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.215314 B =10711.577064 C =12654.977183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.082 4.082 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.276 1.276 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.747 5.747 10 C 0.188 3.812 11 H 0.039 0.961 12 C -0.122 4.122 13 C -0.109 4.109 14 C -0.105 4.105 15 C -0.078 4.078 16 H 0.124 0.876 17 C 0.097 3.903 18 N -0.616 5.616 19 C 0.517 3.483 20 O -0.585 6.585 21 C -0.073 4.073 22 C 0.110 3.890 23 C -0.124 4.124 24 C -0.105 4.105 25 C 0.032 3.968 26 F -0.136 7.136 27 C 0.059 3.941 28 N -0.471 5.471 29 C 0.131 3.869 30 C -0.081 4.081 31 H 0.059 0.941 32 H 0.248 0.752 33 H 0.371 0.629 34 H 0.030 0.970 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.045 0.955 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.137 0.863 43 H 0.159 0.841 44 H 0.191 0.809 45 H 0.180 0.820 46 H 0.166 0.834 47 H 0.041 0.959 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 -29.457 -0.888 29.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.274 4.274 3 Si 0.802 3.198 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.202 1.202 7 C -0.367 4.367 8 H 0.096 0.904 9 N -0.388 5.388 10 C 0.080 3.920 11 H 0.057 0.943 12 C -0.162 4.162 13 C -0.147 4.147 14 C -0.142 4.142 15 C -0.097 4.097 16 H 0.142 0.858 17 C -0.024 4.024 18 N -0.350 5.350 19 C 0.307 3.693 20 O -0.465 6.465 21 C -0.112 4.112 22 C -0.028 4.028 23 C -0.143 4.143 24 C -0.131 4.131 25 C 0.010 3.990 26 F -0.115 7.115 27 C -0.100 4.100 28 N -0.180 5.180 29 C 0.007 3.993 30 C -0.101 4.101 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.204 0.796 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.128 0.872 42 H 0.155 0.845 43 H 0.177 0.823 44 H 0.208 0.792 45 H 0.198 0.802 46 H 0.183 0.817 47 H 0.059 0.941 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.385 -28.346 -0.343 28.448 hybrid contribution -1.286 1.964 -0.311 2.368 sum -3.671 -26.382 -0.655 26.644 Atomic orbital electron populations 1.69856 1.06848 1.25896 1.59979 1.25603 0.96251 1.01295 1.04238 0.85217 0.77102 0.79220 0.78289 1.20218 1.22673 1.20202 1.19612 0.91434 0.85286 1.40342 0.90373 1.43005 1.05550 1.01265 1.88974 1.19295 0.93409 0.84372 0.94937 0.94291 1.21687 0.99253 0.97704 0.97570 1.21453 0.98642 0.92627 1.02025 1.21667 0.97923 1.00566 0.94090 1.21940 0.97427 0.91251 0.99120 0.85784 1.22686 0.84545 0.90822 1.04301 1.48544 1.05800 1.09357 1.71291 1.20896 0.80354 0.92151 0.75883 1.90765 1.54540 1.49333 1.51814 1.20712 0.89407 0.92791 1.08331 1.21186 0.96657 0.92455 0.92553 1.22295 0.93313 0.99505 0.99188 1.22025 0.95983 0.98076 0.97052 1.18994 0.77899 1.01377 1.00730 1.91505 1.29032 1.95619 1.95368 1.23018 0.89335 0.98323 0.99324 1.67469 1.10174 1.18809 1.21512 1.21508 0.93895 0.85023 0.98846 1.21002 0.92342 0.96574 1.00180 0.92236 0.94334 0.79625 0.95064 0.94117 0.91191 0.90646 0.87597 0.93585 0.88672 0.87248 0.84515 0.82340 0.79201 0.80235 0.81651 0.94056 0.95462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.59 13.06 21.65 0.28 -63.31 16 2 C -0.08 -4.93 5.50 84.86 0.47 -4.47 16 3 Si 0.97 48.02 29.55 68.60 2.03 50.05 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.23 -13.40 9.79 84.03 0.82 -12.57 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 9 N -0.75 -38.91 4.97 -330.57 -1.64 -40.55 16 10 C 0.19 7.22 2.57 43.40 0.11 7.33 16 11 H 0.04 1.52 8.06 -2.39 -0.02 1.50 16 12 C -0.12 -4.17 5.33 29.99 0.16 -4.01 16 13 C -0.11 -2.38 5.92 30.57 0.18 -2.20 16 14 C -0.11 -1.78 4.87 30.65 0.15 -1.63 16 15 C -0.08 -1.43 3.28 -10.26 -0.03 -1.46 16 16 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 17 C 0.10 1.46 5.93 86.91 0.52 1.98 16 18 N -0.62 -16.89 3.33 -813.69 -2.71 -19.60 16 19 C 0.52 15.42 7.77 87.66 0.68 16.10 16 20 O -0.59 -25.22 15.63 -3.04 -0.05 -25.27 16 21 C -0.07 -1.19 5.27 29.10 0.15 -1.03 16 22 C 0.11 2.32 5.76 42.56 0.25 2.57 16 23 C -0.12 -1.68 9.71 22.35 0.22 -1.47 16 24 C -0.11 -1.55 10.16 22.51 0.23 -1.32 16 25 C 0.03 0.65 7.35 22.47 0.17 0.82 16 26 F -0.14 -2.89 17.28 44.97 0.78 -2.11 16 27 C 0.06 1.47 11.17 84.73 0.95 2.41 16 28 N -0.47 -13.43 9.22 -183.69 -1.69 -15.12 16 29 C 0.13 4.90 4.75 86.52 0.41 5.31 16 30 C -0.08 -2.54 2.43 -11.66 -0.03 -2.57 16 31 H 0.06 1.97 8.13 -2.39 -0.02 1.95 16 32 H 0.25 15.83 8.31 -92.71 -0.77 15.06 16 33 H 0.37 21.36 5.67 -92.71 -0.53 20.83 16 34 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 0.96 7.99 -2.39 -0.02 0.94 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.11 0.87 7.70 -2.39 -0.02 0.85 16 42 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.16 0.96 7.87 -2.39 -0.02 0.94 16 44 H 0.19 0.77 7.95 -2.91 -0.02 0.75 16 45 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 46 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 47 H 0.04 1.74 8.06 -2.39 -0.02 1.72 16 48 H 0.03 1.29 7.53 -2.39 -0.02 1.28 16 Total: -1.00 -88.39 388.29 2.83 -85.56 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.44 Total: 26.55 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 5.39 Total: 3.81 kcal Atomic # 7 Polarization: -132.82 SS G_CDS: -5.76 Total: -138.58 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -88.39 2.83 -85.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992739068.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.729 kcal (2) G-P(sol) polarization free energy of solvation -88.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds