Wall clock time and date at job start Wed Apr 1 2020 04:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48508 * 109.46709 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47306 * 300.00145 * 3 2 1 6 6 H 1.48499 * 109.46926 * 60.00513 * 3 2 1 7 7 C 1.38810 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00221 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00302 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00308 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.92800 * 329.98769 * 10 9 7 12 12 C 1.53813 * 109.94169 * 208.82272 * 10 9 7 13 13 C 1.52520 * 111.70486 * 298.15413 * 12 10 9 14 14 C 1.53840 * 111.66458 * 305.96095 * 13 12 10 15 15 C 1.51435 * 107.03933 * 57.19660 * 14 13 12 16 16 H 1.09002 * 109.87466 * 54.70175 * 15 14 13 17 17 C 1.52337 * 117.44793 * 181.23336 * 15 14 13 18 18 N 1.48238 * 105.86519 * 145.30325 * 17 15 14 19 19 C 1.34779 * 125.78461 * 176.82363 * 18 17 15 20 20 O 1.21274 * 120.00346 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.99568 * 0.02562 * 19 18 17 22 22 C 1.50709 * 109.46988 * 179.97438 * 21 19 18 23 23 C 1.38233 * 119.58947 * 124.99897 * 22 21 19 24 24 C 1.38584 * 119.18962 * 180.02562 * 23 22 21 25 25 C 1.38878 * 118.40142 * 359.97438 * 24 23 22 26 26 F 1.35094 * 120.44604 * 179.97438 * 25 24 23 27 27 C 1.38425 * 119.10975 * 0.02562 * 25 24 23 28 28 N 1.31843 * 119.58516 * 304.72890 * 22 21 19 29 29 C 1.48659 * 108.43340 * 357.08694 * 18 17 15 30 30 C 1.51618 * 109.94521 * 91.24819 * 10 9 7 31 31 H 1.08998 * 110.50196 * 174.56948 * 30 10 9 32 32 H 0.97000 * 120.00221 * 359.97438 * 1 2 3 33 33 H 0.97006 * 120.00173 * 359.97438 * 9 7 2 34 34 H 1.09001 * 109.03435 * 177.57982 * 12 10 9 35 35 H 1.09007 * 109.03643 * 58.73048 * 12 10 9 36 36 H 1.09008 * 109.04416 * 185.40198 * 13 12 10 37 37 H 1.08996 * 109.04282 * 66.52637 * 13 12 10 38 38 H 1.09001 * 109.93899 * 297.81407 * 14 13 12 39 39 H 1.08999 * 110.01137 * 176.62172 * 14 13 12 40 40 H 1.08994 * 110.16611 * 26.20330 * 17 15 14 41 41 H 1.08997 * 110.17180 * 264.40623 * 17 15 14 42 42 H 1.09006 * 109.47667 * 60.00250 * 21 19 18 43 43 H 1.08999 * 109.47548 * 299.99839 * 21 19 18 44 44 H 1.08004 * 120.40676 * 359.97438 * 23 22 21 45 45 H 1.07998 * 120.80265 * 180.02562 * 24 23 22 46 46 H 1.08001 * 119.63656 * 179.97438 * 27 25 24 47 47 H 1.08997 * 110.62589 * 93.84534 * 29 18 17 48 48 H 1.09006 * 110.62307 * 216.86351 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0127 -3.5351 -0.5102 12 6 1.2239 -4.7448 -0.6956 13 6 -0.0917 -5.0001 0.0326 14 6 0.1354 -5.3214 1.5198 15 6 0.8936 -4.1537 2.1154 16 1 0.3543 -3.2257 1.9247 17 6 1.2716 -4.2398 3.5886 18 7 2.5849 -3.5632 3.7102 19 6 3.2618 -3.3566 4.8572 20 8 4.3329 -2.7883 4.8354 21 6 2.6875 -3.8318 6.1670 22 6 3.6329 -3.4806 7.2869 23 6 3.1733 -2.7438 8.3624 24 6 4.0499 -2.4251 9.3874 25 6 5.3645 -2.8626 9.2922 26 9 6.2540 -2.5749 10.2675 27 6 5.7515 -3.5964 8.1842 28 7 4.8867 -3.8846 7.2312 29 6 3.0259 -3.1454 2.3534 30 6 2.2888 -4.1196 1.4270 31 1 2.7477 -5.1082 1.4378 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 0.0005 34 1 1.7995 -5.6700 -0.7247 35 1 1.0097 -4.4289 -1.7166 36 1 -0.6019 -5.8402 -0.4388 37 1 -0.7205 -4.1134 -0.0477 38 1 0.7226 -6.2345 1.6174 39 1 -0.8225 -5.4399 2.0263 40 1 1.3562 -5.2825 3.8944 41 1 0.5271 -3.7279 4.1982 42 1 2.5507 -4.9127 6.1331 43 1 1.7254 -3.3491 6.3384 44 1 2.1438 -2.4197 8.4031 45 1 3.7185 -1.8511 10.2401 46 1 6.7719 -3.9405 8.1012 47 1 2.7252 -2.1174 2.1515 48 1 4.1050 -3.2586 2.2486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992739071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:49 Heat of formation + Delta-G solvation = -29.934861 kcal Electronic energy + Delta-G solvation = -30841.144848 eV Core-core repulsion = 26617.539689 eV Total energy + Delta-G solvation = -4223.605158 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.19558 -40.61555 -40.00052 -38.33193 -35.37063 -33.66334 -32.93764 -32.70232 -31.38878 -30.46008 -29.03689 -27.93986 -26.79028 -24.57973 -24.14559 -23.33247 -22.46604 -20.86386 -20.76201 -19.09820 -18.70598 -17.86568 -17.54963 -17.15737 -16.68299 -16.43906 -15.97256 -15.68129 -15.00535 -14.76648 -14.49323 -14.43449 -14.24606 -13.98090 -13.96475 -13.69524 -13.28035 -13.19090 -12.90702 -12.66234 -12.55656 -12.35672 -12.18836 -11.97788 -11.78600 -11.54099 -11.35160 -11.13391 -10.89205 -10.74326 -10.39288 -10.29817 -10.16570 -10.09349 -9.91363 -9.77614 -9.54722 -9.52572 -9.35453 -9.01691 -8.90925 -8.20339 -6.99674 -5.81086 -3.08601 0.65857 0.89207 2.94537 3.14214 3.42507 3.50459 3.51120 3.51468 3.75860 4.06369 4.33109 4.48966 4.56222 4.58111 4.68153 4.84753 5.05399 5.07642 5.16183 5.21825 5.30746 5.39133 5.48587 5.52366 5.56987 5.59475 5.65909 5.70179 5.70872 5.80955 5.85516 5.96374 5.99933 6.05586 6.12761 6.25769 6.33886 6.36301 6.40164 6.54949 6.64281 6.64801 6.78293 6.87224 6.87802 7.11375 7.68862 7.69718 7.88529 8.38007 8.49140 9.50310 10.06718 10.41749 11.41151 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.002920 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.491810 B = 9585.320287 C =11205.773321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.716 5.716 10 C 0.187 3.813 11 H 0.054 0.946 12 C -0.122 4.122 13 C -0.114 4.114 14 C -0.097 4.097 15 C -0.108 4.108 16 H 0.104 0.896 17 C 0.113 3.887 18 N -0.618 5.618 19 C 0.530 3.470 20 O -0.531 6.531 21 C -0.088 4.088 22 C 0.139 3.861 23 C -0.137 4.137 24 C -0.109 4.109 25 C 0.039 3.961 26 F -0.133 7.133 27 C 0.082 3.918 28 N -0.428 5.428 29 C 0.119 3.881 30 C -0.118 4.118 31 H 0.065 0.935 32 H 0.254 0.746 33 H 0.385 0.615 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.166 0.834 47 H 0.101 0.899 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 -12.770 14.535 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.357 5.357 10 C 0.076 3.924 11 H 0.073 0.927 12 C -0.161 4.161 13 C -0.152 4.152 14 C -0.135 4.135 15 C -0.127 4.127 16 H 0.122 0.878 17 C -0.010 4.010 18 N -0.353 5.353 19 C 0.317 3.683 20 O -0.408 6.408 21 C -0.129 4.129 22 C 0.000 4.000 23 C -0.157 4.157 24 C -0.135 4.135 25 C 0.018 3.982 26 F -0.112 7.112 27 C -0.077 4.077 28 N -0.136 5.136 29 C -0.002 4.002 30 C -0.141 4.141 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.220 0.780 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.164 0.836 45 H 0.165 0.835 46 H 0.183 0.817 47 H 0.119 0.881 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.221 -12.775 13.883 18.996 hybrid contribution -0.048 1.558 1.021 1.864 sum 2.173 -11.217 14.904 18.779 Atomic orbital electron populations 1.69651 1.05031 1.25520 1.57729 1.24679 0.95431 0.97531 1.02964 0.86222 0.79093 0.84463 0.77120 1.20455 1.21927 1.21976 1.19267 0.91031 0.84035 1.42399 0.91070 1.42453 1.05744 0.99487 1.88035 1.19920 0.94875 0.86537 0.91065 0.92749 1.21812 0.96244 0.98337 0.99668 1.21453 0.98021 1.01224 0.94476 1.21250 0.99377 0.96944 0.95954 1.21862 0.97742 1.01163 0.91911 0.87774 1.21726 0.84523 0.96295 0.98428 1.49212 1.21011 1.57864 1.07212 1.19698 0.84763 0.79935 0.83885 1.90727 1.21458 1.42280 1.86302 1.20603 0.97781 1.04067 0.90436 1.20716 0.91204 0.94175 0.93865 1.21889 1.01391 0.98701 0.93740 1.21594 0.91799 0.99730 1.00410 1.18854 0.88319 1.02006 0.89058 1.91511 1.67187 1.91830 1.60653 1.22910 1.00538 0.95909 0.88377 1.67525 1.02197 1.19210 1.24638 1.22228 0.98356 1.00942 0.78627 1.22856 0.94805 0.97837 0.98557 0.91661 0.93617 0.78013 0.92861 0.91902 0.92910 0.91412 0.92439 0.92311 0.92137 0.91709 0.87065 0.87242 0.83601 0.83506 0.81668 0.88051 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.90 22.15 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.07 8.09 -15.06 -0.12 -6.20 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -15.95 3.84 -53.70 -0.21 -16.15 16 10 C 0.19 3.35 3.01 -68.21 -0.21 3.14 16 11 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 12 C -0.12 -1.81 5.51 -26.55 -0.15 -1.96 16 13 C -0.11 -1.55 5.58 -26.54 -0.15 -1.70 16 14 C -0.10 -1.19 5.70 -27.08 -0.15 -1.35 16 15 C -0.11 -1.58 2.21 -90.36 -0.20 -1.78 16 16 H 0.10 1.91 6.59 -51.93 -0.34 1.57 16 17 C 0.11 1.46 6.23 -3.42 -0.02 1.44 16 18 N -0.62 -9.95 3.38 -170.71 -0.58 -10.53 16 19 C 0.53 8.73 7.80 -10.98 -0.09 8.64 16 20 O -0.53 -11.01 15.64 5.56 0.09 -10.93 16 21 C -0.09 -1.01 5.31 -29.03 -0.15 -1.16 16 22 C 0.14 1.72 5.76 -82.58 -0.48 1.25 16 23 C -0.14 -1.34 9.71 -39.46 -0.38 -1.72 16 24 C -0.11 -1.03 10.16 -39.22 -0.40 -1.43 16 25 C 0.04 0.43 7.35 -39.28 -0.29 0.14 16 26 F -0.13 -1.44 17.28 2.25 0.04 -1.40 16 27 C 0.08 0.98 11.17 -17.46 -0.20 0.78 16 28 N -0.43 -6.06 9.24 -9.41 -0.09 -6.15 16 29 C 0.12 2.20 6.43 -2.68 -0.02 2.18 16 30 C -0.12 -1.91 2.37 -89.76 -0.21 -2.12 16 31 H 0.07 0.97 8.01 -51.93 -0.42 0.56 16 32 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.38 9.14 5.97 -40.82 -0.24 8.89 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.07 1.07 7.03 -51.93 -0.36 0.70 16 38 H 0.06 0.64 8.03 -51.93 -0.42 0.23 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.11 0.94 7.87 -51.93 -0.41 0.53 16 44 H 0.15 0.98 7.95 -52.48 -0.42 0.57 16 45 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 46 H 0.17 1.60 8.06 -52.49 -0.42 1.17 16 47 H 0.10 2.25 6.15 -51.93 -0.32 1.93 16 48 H 0.06 1.21 8.07 -51.93 -0.42 0.79 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -32.11 384.10 -9.67 -41.79 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.11 Total: 8.60 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -3.30 Total: -2.20 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.15 Total: -58.77 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.11 -9.67 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992739071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.850 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds