Wall clock time and date at job start Wed Apr 1 2020 04:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48508 * 109.46709 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47306 * 300.00145 * 3 2 1 6 6 H 1.48499 * 109.46926 * 60.00513 * 3 2 1 7 7 C 1.38810 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00221 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00302 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00308 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.92800 * 329.98769 * 10 9 7 12 12 C 1.53813 * 109.94169 * 208.82272 * 10 9 7 13 13 C 1.52520 * 111.70486 * 298.15413 * 12 10 9 14 14 C 1.53840 * 111.66458 * 305.96095 * 13 12 10 15 15 C 1.51435 * 107.03933 * 57.19660 * 14 13 12 16 16 H 1.09002 * 109.87466 * 54.70175 * 15 14 13 17 17 C 1.52337 * 117.44793 * 181.23336 * 15 14 13 18 18 N 1.48238 * 105.86519 * 145.30325 * 17 15 14 19 19 C 1.34779 * 125.78461 * 176.82363 * 18 17 15 20 20 O 1.21274 * 120.00346 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.99568 * 0.02562 * 19 18 17 22 22 C 1.50709 * 109.46988 * 179.97438 * 21 19 18 23 23 C 1.38233 * 119.58947 * 124.99897 * 22 21 19 24 24 C 1.38584 * 119.18962 * 180.02562 * 23 22 21 25 25 C 1.38878 * 118.40142 * 359.97438 * 24 23 22 26 26 F 1.35094 * 120.44604 * 179.97438 * 25 24 23 27 27 C 1.38425 * 119.10975 * 0.02562 * 25 24 23 28 28 N 1.31843 * 119.58516 * 304.72890 * 22 21 19 29 29 C 1.48659 * 108.43340 * 357.08694 * 18 17 15 30 30 C 1.51618 * 109.94521 * 91.24819 * 10 9 7 31 31 H 1.08998 * 110.50196 * 174.56948 * 30 10 9 32 32 H 0.97000 * 120.00221 * 359.97438 * 1 2 3 33 33 H 0.97006 * 120.00173 * 359.97438 * 9 7 2 34 34 H 1.09001 * 109.03435 * 177.57982 * 12 10 9 35 35 H 1.09007 * 109.03643 * 58.73048 * 12 10 9 36 36 H 1.09008 * 109.04416 * 185.40198 * 13 12 10 37 37 H 1.08996 * 109.04282 * 66.52637 * 13 12 10 38 38 H 1.09001 * 109.93899 * 297.81407 * 14 13 12 39 39 H 1.08999 * 110.01137 * 176.62172 * 14 13 12 40 40 H 1.08994 * 110.16611 * 26.20330 * 17 15 14 41 41 H 1.08997 * 110.17180 * 264.40623 * 17 15 14 42 42 H 1.09006 * 109.47667 * 60.00250 * 21 19 18 43 43 H 1.08999 * 109.47548 * 299.99839 * 21 19 18 44 44 H 1.08004 * 120.40676 * 359.97438 * 23 22 21 45 45 H 1.07998 * 120.80265 * 180.02562 * 24 23 22 46 46 H 1.08001 * 119.63656 * 179.97438 * 27 25 24 47 47 H 1.08997 * 110.62589 * 93.84534 * 29 18 17 48 48 H 1.09006 * 110.62307 * 216.86351 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0127 -3.5351 -0.5102 12 6 1.2239 -4.7448 -0.6956 13 6 -0.0917 -5.0001 0.0326 14 6 0.1354 -5.3214 1.5198 15 6 0.8936 -4.1537 2.1154 16 1 0.3543 -3.2257 1.9247 17 6 1.2716 -4.2398 3.5886 18 7 2.5849 -3.5632 3.7102 19 6 3.2618 -3.3566 4.8572 20 8 4.3329 -2.7883 4.8354 21 6 2.6875 -3.8318 6.1670 22 6 3.6329 -3.4806 7.2869 23 6 3.1733 -2.7438 8.3624 24 6 4.0499 -2.4251 9.3874 25 6 5.3645 -2.8626 9.2922 26 9 6.2540 -2.5749 10.2675 27 6 5.7515 -3.5964 8.1842 28 7 4.8867 -3.8846 7.2312 29 6 3.0259 -3.1454 2.3534 30 6 2.2888 -4.1196 1.4270 31 1 2.7477 -5.1082 1.4378 32 1 -0.4850 0.8400 0.0004 33 1 0.3556 -2.3881 0.0005 34 1 1.7995 -5.6700 -0.7247 35 1 1.0097 -4.4289 -1.7166 36 1 -0.6019 -5.8402 -0.4388 37 1 -0.7205 -4.1134 -0.0477 38 1 0.7226 -6.2345 1.6174 39 1 -0.8225 -5.4399 2.0263 40 1 1.3562 -5.2825 3.8944 41 1 0.5271 -3.7279 4.1982 42 1 2.5507 -4.9127 6.1331 43 1 1.7254 -3.3491 6.3384 44 1 2.1438 -2.4197 8.4031 45 1 3.7185 -1.8511 10.2401 46 1 6.7719 -3.9405 8.1012 47 1 2.7252 -2.1174 2.1515 48 1 4.1050 -3.2586 2.2486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992739071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:48 Heat of formation + Delta-G solvation = -49.475564 kcal Electronic energy + Delta-G solvation = -30841.992196 eV Core-core repulsion = 26617.539689 eV Total energy + Delta-G solvation = -4224.452506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.02457 -41.67092 -41.08378 -39.59909 -36.76600 -35.32900 -33.87028 -33.49776 -33.04237 -31.65362 -30.59582 -29.00596 -28.03066 -25.97046 -25.13504 -24.86282 -23.40733 -22.09603 -21.97079 -20.32732 -20.05870 -19.09440 -18.67428 -18.43251 -17.80896 -17.43437 -16.91697 -16.80381 -16.50237 -16.11924 -15.81780 -15.67291 -15.45854 -15.14780 -14.98164 -14.88885 -14.50176 -14.19680 -14.05707 -14.00746 -13.67548 -13.49138 -13.28182 -13.17256 -13.01103 -12.87522 -12.86490 -12.63748 -12.62293 -12.34741 -12.10855 -11.77633 -11.58363 -11.32958 -11.08198 -10.96777 -10.89384 -10.85394 -10.55976 -10.51546 -9.86858 -9.53180 -8.91767 -7.91846 -5.14856 -0.16711 0.12301 1.41457 1.44980 1.51619 1.72828 2.00705 2.55748 2.61512 2.95402 3.24515 3.41072 3.46922 3.60095 3.72784 3.77586 3.87544 3.90064 3.99037 4.14438 4.28791 4.32939 4.41999 4.46584 4.51835 4.56254 4.61055 4.68472 4.71044 4.73821 4.76052 4.83646 4.85288 4.91430 4.95324 4.99712 5.14087 5.16887 5.26043 5.32851 5.45061 5.48865 5.52686 5.58940 5.60308 5.61802 5.82049 6.32425 6.66418 6.86380 7.24855 7.40308 8.18081 8.41957 9.31306 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.002920 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.491810 B = 9585.320287 C =11205.773321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.067 4.067 3 Si 0.948 3.052 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.300 1.300 7 C -0.217 4.217 8 H 0.064 0.936 9 N -0.719 5.719 10 C 0.177 3.823 11 H 0.039 0.961 12 C -0.115 4.115 13 C -0.113 4.113 14 C -0.088 4.088 15 C -0.099 4.099 16 H 0.061 0.939 17 C 0.113 3.887 18 N -0.620 5.620 19 C 0.520 3.480 20 O -0.586 6.586 21 C -0.077 4.077 22 C 0.114 3.886 23 C -0.130 4.130 24 C -0.105 4.105 25 C 0.032 3.968 26 F -0.135 7.135 27 C 0.063 3.937 28 N -0.466 5.466 29 C 0.120 3.880 30 C -0.110 4.110 31 H 0.091 0.909 32 H 0.248 0.752 33 H 0.378 0.622 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.182 0.818 45 H 0.178 0.822 46 H 0.174 0.826 47 H 0.055 0.945 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.251 -15.309 16.329 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.228 1.228 7 C -0.349 4.349 8 H 0.082 0.918 9 N -0.360 5.360 10 C 0.068 3.932 11 H 0.057 0.943 12 C -0.153 4.153 13 C -0.150 4.150 14 C -0.125 4.125 15 C -0.118 4.118 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.354 5.354 19 C 0.310 3.690 20 O -0.466 6.466 21 C -0.116 4.116 22 C -0.024 4.024 23 C -0.150 4.150 24 C -0.132 4.132 25 C 0.011 3.989 26 F -0.114 7.114 27 C -0.096 4.096 28 N -0.174 5.174 29 C -0.002 4.002 30 C -0.131 4.131 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.212 0.788 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.199 0.801 45 H 0.195 0.805 46 H 0.191 0.809 47 H 0.073 0.927 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.803 -15.369 15.679 21.970 hybrid contribution 0.491 2.312 0.456 2.407 sum 1.294 -13.057 16.136 20.797 Atomic orbital electron populations 1.69755 1.05882 1.25375 1.60301 1.25200 0.96104 0.99823 1.04848 0.85439 0.78226 0.81891 0.76506 1.20196 1.22008 1.22768 1.19442 0.90822 0.85410 1.39229 0.91795 1.42523 1.05454 1.00173 1.87857 1.20176 0.94414 0.85890 0.92720 0.94328 1.21732 0.96965 0.98039 0.98572 1.21447 0.96671 1.00985 0.95921 1.21234 1.00484 0.96410 0.94411 1.21764 0.96229 1.00647 0.93197 0.92043 1.21956 0.83058 0.98422 0.97367 1.49322 1.22183 1.57747 1.06142 1.20700 0.84123 0.78849 0.85339 1.90698 1.24003 1.44719 1.87201 1.20678 0.98417 1.05837 0.86717 1.21069 0.91025 0.95200 0.95117 1.22254 1.03025 0.97108 0.92564 1.21990 0.90911 0.99041 1.01210 1.18964 0.89101 1.02106 0.88765 1.91504 1.67443 1.91839 1.60595 1.23089 1.00951 0.96731 0.88784 1.67468 1.03461 1.20764 1.25732 1.21892 0.97471 0.99324 0.81503 1.22668 0.95978 0.97877 0.96589 0.89069 0.94307 0.78831 0.89825 0.93273 0.90183 0.94380 0.89789 0.90153 0.88145 0.89907 0.84433 0.83805 0.80076 0.80475 0.80930 0.92700 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.95 13.06 21.65 0.28 -56.67 16 2 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.95 47.15 29.55 68.60 2.03 49.17 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 6 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 7 C -0.22 -11.57 8.09 84.03 0.68 -10.89 16 8 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 9 N -0.72 -33.08 3.84 -323.79 -1.24 -34.33 16 10 C 0.18 6.35 3.01 44.81 0.13 6.48 16 11 H 0.04 1.49 8.05 -2.39 -0.02 1.47 16 12 C -0.11 -3.20 5.51 30.71 0.17 -3.03 16 13 C -0.11 -2.76 5.58 30.72 0.17 -2.59 16 14 C -0.09 -1.78 5.70 30.37 0.17 -1.61 16 15 C -0.10 -2.69 2.21 -10.62 -0.02 -2.71 16 16 H 0.06 2.24 6.59 -2.39 -0.02 2.23 16 17 C 0.11 2.53 6.23 85.83 0.54 3.07 16 18 N -0.62 -19.28 3.38 -812.39 -2.75 -22.02 16 19 C 0.52 16.67 7.80 87.66 0.68 17.36 16 20 O -0.59 -24.95 15.64 -3.01 -0.05 -25.00 16 21 C -0.08 -1.52 5.31 29.11 0.15 -1.37 16 22 C 0.11 2.62 5.76 42.56 0.24 2.87 16 23 C -0.13 -2.15 9.71 22.35 0.22 -1.93 16 24 C -0.11 -1.72 10.16 22.51 0.23 -1.50 16 25 C 0.03 0.67 7.35 22.47 0.17 0.83 16 26 F -0.14 -2.81 17.28 44.97 0.78 -2.03 16 27 C 0.06 1.52 11.17 84.73 0.95 2.47 16 28 N -0.47 -13.06 9.24 -183.70 -1.70 -14.76 16 29 C 0.12 4.57 6.43 86.07 0.55 5.12 16 30 C -0.11 -3.41 2.37 -10.24 -0.02 -3.43 16 31 H 0.09 2.43 8.01 -2.39 -0.02 2.41 16 32 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.38 18.57 5.97 -92.70 -0.55 18.02 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.04 1.16 7.03 -2.39 -0.02 1.15 16 38 H 0.08 1.35 8.03 -2.39 -0.02 1.33 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 1.55 8.08 -2.39 -0.02 1.53 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.14 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.14 1.82 7.87 -2.39 -0.02 1.80 16 44 H 0.18 1.59 7.95 -2.91 -0.02 1.57 16 45 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 47 H 0.05 2.58 6.15 -2.39 -0.01 2.57 16 48 H 0.04 1.77 8.07 -2.38 -0.02 1.75 16 Total: -1.00 -76.16 384.10 3.26 -72.91 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.43 Total: 26.92 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 5.48 Total: 5.81 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -5.40 Total: -127.77 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.05 Total: -25.00 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.17 kcal Total: -76.16 3.26 -72.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992739071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.432 kcal (2) G-P(sol) polarization free energy of solvation -76.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds