Wall clock time and date at job start Wed Apr 1 2020 04:41:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31613 * 1
3 3 Si 1.86797 * 120.00286 * 2 1
4 4 H 1.48495 * 109.47316 * 269.99754 * 3 2 1
5 5 H 1.48505 * 109.47199 * 29.99837 * 3 2 1
6 6 H 1.48505 * 109.47325 * 149.99853 * 3 2 1
7 7 C 1.38816 * 119.99781 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99719 * 179.97438 * 7 2 1
9 9 N 1.36936 * 120.00051 * 0.02562 * 7 2 1
10 10 C 1.46501 * 119.99832 * 179.97438 * 9 7 2
11 11 H 1.08996 * 107.81037 * 38.33411 * 10 9 7
12 12 C 1.49272 * 108.02149 * 282.76130 * 10 9 7
13 13 C 1.51832 * 112.65117 * 280.41106 * 12 10 9
14 14 C 1.52257 * 110.43245 * 306.92749 * 13 12 10
15 15 C 1.52923 * 110.24024 * 61.74340 * 14 13 12
16 16 H 1.08998 * 111.94451 * 67.92808 * 15 14 13
17 17 C 1.55142 * 107.00919 * 191.99496 * 15 14 13
18 18 N 1.47322 * 106.87180 * 92.01046 * 17 15 14
19 19 C 1.34777 * 125.74031 * 179.91244 * 18 17 15
20 20 O 1.21283 * 119.99750 * 179.69367 * 19 18 17
21 21 C 1.50702 * 119.99928 * 359.97438 * 19 18 17
22 22 C 1.50700 * 109.46869 * 179.72354 * 21 19 18
23 23 N 1.31865 * 119.63329 * 269.71917 * 22 21 19
24 24 C 1.31852 * 121.75173 * 179.75056 * 23 22 21
25 25 C 1.38238 * 120.81369 * 0.53673 * 24 23 22
26 26 C 1.38584 * 119.19063 * 359.73388 * 25 24 23
27 27 C 1.38422 * 119.63688 * 90.00241 * 22 21 19
28 28 F 1.35101 * 120.44193 * 359.94933 * 27 22 21
29 29 C 1.47817 * 108.51757 * 359.65418 * 18 17 15
30 30 C 1.49687 * 108.11689 * 154.99941 * 10 9 7
31 31 H 1.09003 * 109.18429 * 319.78330 * 30 10 9
32 32 H 0.96999 * 120.00089 * 0.02562 * 1 2 3
33 33 H 0.97001 * 119.99854 * 359.97438 * 9 7 2
34 34 H 1.09008 * 108.87727 * 159.65379 * 12 10 9
35 35 H 1.09000 * 109.02129 * 41.26626 * 12 10 9
36 36 H 1.09003 * 109.31599 * 186.63113 * 13 12 10
37 37 H 1.09003 * 109.30844 * 67.21940 * 13 12 10
38 38 H 1.09002 * 109.33602 * 301.50960 * 14 13 12
39 39 H 1.09001 * 109.21645 * 181.90620 * 14 13 12
40 40 H 1.09006 * 110.08000 * 332.60519 * 17 15 14
41 41 H 1.08996 * 109.87880 * 211.31485 * 17 15 14
42 42 H 1.09004 * 109.46965 * 299.72211 * 21 19 18
43 43 H 1.08994 * 109.46990 * 59.72065 * 21 19 18
44 44 H 1.07992 * 119.59243 * 180.24823 * 24 23 22
45 45 H 1.08001 * 120.40187 * 179.71770 * 25 24 23
46 46 H 1.08007 * 120.79898 * 180.02562 * 26 25 24
47 47 H 1.09001 * 110.51013 * 143.23238 * 29 18 17
48 48 H 1.08999 * 110.51003 * 265.95433 * 29 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4978 2.0463 -1.4000
5 1 1.4477 2.6527 0.7000
6 1 3.5478 1.4401 0.7001
7 6 2.0102 -1.2022 0.0005
8 1 3.0901 -1.2022 0.0001
9 7 1.3255 -2.3881 0.0005
10 6 2.0580 -3.6568 0.0005
11 1 2.9296 -3.5385 0.6442
12 6 2.5604 -3.9000 -1.3839
13 6 1.4878 -4.4501 -2.3070
14 6 0.8398 -5.6837 -1.6933
15 6 0.1578 -5.3216 -0.3733
16 1 -0.7077 -4.6767 -0.5255
17 6 -0.2031 -6.6556 0.3319
18 7 0.9300 -6.9950 1.2102
19 6 1.0137 -8.0820 2.0026
20 8 2.0020 -8.2625 2.6820
21 6 -0.1181 -9.0764 2.0396
22 6 0.2256 -10.1933 2.9913
23 7 0.8537 -11.2623 2.5424
24 6 1.1789 -12.2615 3.3387
25 6 0.8598 -12.2281 4.6834
26 6 0.1948 -11.1242 5.1930
27 6 -0.1269 -10.0883 4.3257
28 9 -0.7746 -8.9925 4.7785
29 6 1.9622 -5.9461 1.0714
30 6 1.1741 -4.7046 0.6018
31 1 0.6404 -4.2786 1.4514
32 1 -0.4850 0.8400 -0.0004
33 1 0.3554 -2.3880 0.0005
34 1 3.3846 -4.6120 -1.3400
35 1 2.9316 -2.9621 -1.7969
36 1 1.9375 -4.7173 -3.2633
37 1 0.7269 -3.6869 -2.4705
38 1 1.6039 -6.4391 -1.5096
39 1 0.0981 -6.0814 -2.3859
40 1 -0.3494 -7.4425 -0.4081
41 1 -1.1088 -6.5282 0.9247
42 1 -1.0278 -8.5792 2.3763
43 1 -0.2755 -9.4850 1.0415
44 1 1.6967 -13.1187 2.9347
45 1 1.1253 -13.0523 5.3288
46 1 -0.0668 -11.0706 6.2395
47 1 2.4422 -5.7534 2.0308
48 1 2.7016 -6.2344 0.3242
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000992799900.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:41:20
Heat of formation + Delta-G solvation = -33.114880 kcal
Electronic energy + Delta-G solvation = -30706.066206 eV
Core-core repulsion = 26482.323152 eV
Total energy + Delta-G solvation = -4223.743054 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.175 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-49.26117 -40.78413 -40.24754 -38.59546 -35.70429 -33.59690 -33.53019 -32.24872
-31.56820 -30.81930 -29.39386 -28.37536 -26.61629 -24.75852 -23.92954 -23.31389
-22.48517 -22.02976 -21.06261 -19.35435 -18.06661 -17.97211 -17.58573 -17.24481
-17.03366 -16.66669 -16.06597 -15.97287 -15.34960 -14.91245 -14.58906 -14.32838
-14.08842 -14.04017 -13.89732 -13.70255 -13.52616 -13.46359 -13.37583 -12.95818
-12.68338 -12.59359 -12.38529 -12.12805 -11.84255 -11.69528 -11.32634 -11.16662
-10.91305 -10.83975 -10.68992 -10.30814 -10.16168 -10.05740 -9.97085 -9.92939
-9.79886 -9.60402 -9.51000 -9.17200 -8.84660 -8.59550 -6.93091 -5.75625
-3.03304 0.54218 0.73142 2.59638 2.85303 3.33694 3.43878 3.49805
3.50788 3.65207 3.90291 4.21070 4.32454 4.43443 4.54383 4.59700
4.60105 4.86200 4.90403 4.96543 5.05496 5.20093 5.27941 5.33401
5.39697 5.46035 5.47936 5.55298 5.59551 5.61296 5.69882 5.79952
5.82678 5.87882 5.96420 6.04108 6.13057 6.22819 6.23591 6.34461
6.39558 6.43679 6.52221 6.81416 6.83527 7.01255 7.18975 7.48134
7.51594 7.71526 8.11450 8.43248 9.54793 10.12048 10.47615 11.47134
Molecular weight = 347.18amu
Principal moments of inertia in cm(-1)
A = 0.019728 B = 0.002292 C = 0.002181
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1418.970286 B =12210.836886 C =12835.239090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C -0.014 4.014
3 Si 0.904 3.096
4 H -0.291 1.291
5 H -0.292 1.292
6 H -0.283 1.283
7 C -0.234 4.234
8 H 0.069 0.931
9 N -0.726 5.726
10 C 0.188 3.812
11 H 0.039 0.961
12 C -0.126 4.126
13 C -0.110 4.110
14 C -0.109 4.109
15 C -0.088 4.088
16 H 0.101 0.899
17 C 0.098 3.902
18 N -0.614 5.614
19 C 0.537 3.463
20 O -0.539 6.539
21 C -0.092 4.092
22 C 0.127 3.873
23 N -0.448 5.448
24 C 0.093 3.907
25 C -0.147 4.147
26 C -0.108 4.108
27 C 0.062 3.938
28 F -0.126 7.126
29 C 0.115 3.885
30 C -0.089 4.089
31 H 0.085 0.915
32 H 0.254 0.746
33 H 0.382 0.618
34 H 0.037 0.963
35 H 0.072 0.928
36 H 0.049 0.951
37 H 0.067 0.933
38 H 0.058 0.942
39 H 0.057 0.943
40 H 0.071 0.929
41 H 0.068 0.932
42 H 0.113 0.887
43 H 0.118 0.882
44 H 0.165 0.835
45 H 0.145 0.855
46 H 0.148 0.852
47 H 0.077 0.923
48 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.847 -25.613 4.122 26.098
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.582 5.582
2 C -0.210 4.210
3 Si 0.735 3.265
4 H -0.218 1.218
5 H -0.219 1.219
6 H -0.208 1.208
7 C -0.365 4.365
8 H 0.087 0.913
9 N -0.368 5.368
10 C 0.079 3.921
11 H 0.057 0.943
12 C -0.166 4.166
13 C -0.147 4.147
14 C -0.146 4.146
15 C -0.107 4.107
16 H 0.119 0.881
17 C -0.025 4.025
18 N -0.348 5.348
19 C 0.325 3.675
20 O -0.417 6.417
21 C -0.133 4.133
22 C -0.013 4.013
23 N -0.157 5.157
24 C -0.065 4.065
25 C -0.166 4.166
26 C -0.135 4.135
27 C 0.041 3.959
28 F -0.104 7.104
29 C -0.007 4.007
30 C -0.109 4.109
31 H 0.103 0.897
32 H 0.064 0.936
33 H 0.216 0.784
34 H 0.056 0.944
35 H 0.091 0.909
36 H 0.068 0.932
37 H 0.086 0.914
38 H 0.076 0.924
39 H 0.076 0.924
40 H 0.089 0.911
41 H 0.087 0.913
42 H 0.131 0.869
43 H 0.137 0.863
44 H 0.182 0.818
45 H 0.163 0.837
46 H 0.166 0.834
47 H 0.096 0.904
48 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -1.990 -25.645 3.694 25.986
hybrid contribution -0.201 1.235 0.984 1.591
sum -2.191 -24.411 4.678 24.951
Atomic orbital electron populations
1.69649 1.05039 1.25516 1.57997 1.24698 0.95477 0.97530 1.03269
0.86238 0.78698 0.84112 0.77447 1.21841 1.21881 1.20842 1.19210
0.90961 0.84130 1.42211 0.91285 1.42554 1.05655 0.99464 1.89162
1.18602 0.93763 0.86043 0.93733 0.94313 1.21204 0.97025 1.00616
0.97723 1.20997 0.99148 0.96964 0.97626 1.21448 0.99299 0.98319
0.95579 1.22124 0.99394 0.94169 0.95008 0.88108 1.22499 0.89084
0.97905 0.92969 1.48586 1.20423 1.22960 1.42843 1.19756 0.87914
0.80789 0.79072 1.90722 1.32872 1.75207 1.42860 1.20539 0.98821
0.92763 1.01155 1.20627 0.95689 0.94395 0.90546 1.67480 1.09121
1.00098 1.38959 1.22820 0.96766 0.96606 0.90296 1.22081 0.98835
0.98648 0.97066 1.21653 0.98247 0.92830 1.00732 1.18521 0.98411
0.85490 0.93516 1.91536 1.78459 1.51176 1.89274 1.22324 0.90718
0.86067 1.01597 1.21551 0.96503 0.94084 0.98719 0.89704 0.93626
0.78413 0.94443 0.90930 0.93237 0.91411 0.92377 0.92394 0.91116
0.91329 0.86907 0.86347 0.81819 0.83675 0.83405 0.90450 0.91166
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16
2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16
3 Si 0.90 22.21 29.55 -169.99 -5.02 17.19 16
4 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16
5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16
6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
7 C -0.23 -6.28 9.33 -15.06 -0.14 -6.42 16
8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16
9 N -0.73 -17.14 4.99 -56.85 -0.28 -17.43 16
10 C 0.19 3.52 2.24 -71.40 -0.16 3.36 16
11 H 0.04 0.78 7.96 -51.93 -0.41 0.36 16
12 C -0.13 -2.16 5.33 -29.16 -0.16 -2.32 16
13 C -0.11 -1.65 5.89 -27.70 -0.16 -1.82 16
14 C -0.11 -1.37 4.71 -27.15 -0.13 -1.49 16
15 C -0.09 -1.15 3.51 -89.13 -0.31 -1.47 16
16 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16
17 C 0.10 1.08 5.90 -2.46 -0.01 1.06 16
18 N -0.61 -8.27 3.34 -169.78 -0.57 -8.84 16
19 C 0.54 7.75 7.85 -10.98 -0.09 7.66 16
20 O -0.54 -9.87 16.31 5.55 0.09 -9.78 16
21 C -0.09 -1.00 5.02 -29.03 -0.15 -1.15 16
22 C 0.13 1.51 5.28 -82.51 -0.44 1.07 16
23 N -0.45 -5.19 10.27 -9.42 -0.10 -5.28 16
24 C 0.09 0.78 11.18 -17.54 -0.20 0.58 16
25 C -0.15 -1.01 10.11 -39.45 -0.40 -1.41 16
26 C -0.11 -0.91 10.16 -39.22 -0.40 -1.31 16
27 C 0.06 0.70 7.27 -39.28 -0.29 0.41 16
28 F -0.13 -1.52 16.49 2.25 0.04 -1.48 16
29 C 0.12 1.71 5.84 -2.60 -0.02 1.70 16
30 C -0.09 -1.40 2.23 -91.14 -0.20 -1.60 16
31 H 0.08 1.49 8.07 -51.93 -0.42 1.07 16
32 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16
33 H 0.38 9.58 7.73 -40.82 -0.32 9.26 16
34 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16
35 H 0.07 1.43 7.53 -51.93 -0.39 1.04 16
36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16
38 H 0.06 0.73 6.99 -51.93 -0.36 0.36 16
39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
40 H 0.07 0.64 7.76 -51.93 -0.40 0.23 16
41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
42 H 0.11 1.02 7.63 -51.93 -0.40 0.62 16
43 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16
44 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16
45 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16
46 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16
47 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16
48 H 0.07 1.02 7.42 -51.93 -0.39 0.64 16
LS Contribution 389.13 15.07 5.86 5.86
Total: -1.00 -33.38 389.13 -9.87 -43.25
By element:
Atomic # 1 Polarization: 14.21 SS G_CDS: -7.28 Total: 6.94 kcal
Atomic # 6 Polarization: -0.29 SS G_CDS: -3.34 Total: -3.62 kcal
Atomic # 7 Polarization: -58.13 SS G_CDS: -0.22 Total: -58.36 kcal
Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal
Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -33.38 -9.87 -43.25 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000992799900.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.135 kcal
(2) G-P(sol) polarization free energy of solvation -33.381 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.246 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.115 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds