Wall clock time and date at job start Wed Apr 1 2020 04:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00286 * 2 1 4 4 H 1.48495 * 109.47316 * 269.99754 * 3 2 1 5 5 H 1.48505 * 109.47199 * 29.99837 * 3 2 1 6 6 H 1.48505 * 109.47325 * 149.99853 * 3 2 1 7 7 C 1.38816 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99719 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99832 * 179.97438 * 9 7 2 11 11 H 1.08996 * 107.81037 * 38.33411 * 10 9 7 12 12 C 1.49272 * 108.02149 * 282.76130 * 10 9 7 13 13 C 1.51832 * 112.65117 * 280.41106 * 12 10 9 14 14 C 1.52257 * 110.43245 * 306.92749 * 13 12 10 15 15 C 1.52923 * 110.24024 * 61.74340 * 14 13 12 16 16 H 1.08998 * 111.94451 * 67.92808 * 15 14 13 17 17 C 1.55142 * 107.00919 * 191.99496 * 15 14 13 18 18 N 1.47322 * 106.87180 * 92.01046 * 17 15 14 19 19 C 1.34777 * 125.74031 * 179.91244 * 18 17 15 20 20 O 1.21283 * 119.99750 * 179.69367 * 19 18 17 21 21 C 1.50702 * 119.99928 * 359.97438 * 19 18 17 22 22 C 1.50700 * 109.46869 * 179.72354 * 21 19 18 23 23 N 1.31865 * 119.63329 * 269.71917 * 22 21 19 24 24 C 1.31852 * 121.75173 * 179.75056 * 23 22 21 25 25 C 1.38238 * 120.81369 * 0.53673 * 24 23 22 26 26 C 1.38584 * 119.19063 * 359.73388 * 25 24 23 27 27 C 1.38422 * 119.63688 * 90.00241 * 22 21 19 28 28 F 1.35101 * 120.44193 * 359.94933 * 27 22 21 29 29 C 1.47817 * 108.51757 * 359.65418 * 18 17 15 30 30 C 1.49687 * 108.11689 * 154.99941 * 10 9 7 31 31 H 1.09003 * 109.18429 * 319.78330 * 30 10 9 32 32 H 0.96999 * 120.00089 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99854 * 359.97438 * 9 7 2 34 34 H 1.09008 * 108.87727 * 159.65379 * 12 10 9 35 35 H 1.09000 * 109.02129 * 41.26626 * 12 10 9 36 36 H 1.09003 * 109.31599 * 186.63113 * 13 12 10 37 37 H 1.09003 * 109.30844 * 67.21940 * 13 12 10 38 38 H 1.09002 * 109.33602 * 301.50960 * 14 13 12 39 39 H 1.09001 * 109.21645 * 181.90620 * 14 13 12 40 40 H 1.09006 * 110.08000 * 332.60519 * 17 15 14 41 41 H 1.08996 * 109.87880 * 211.31485 * 17 15 14 42 42 H 1.09004 * 109.46965 * 299.72211 * 21 19 18 43 43 H 1.08994 * 109.46990 * 59.72065 * 21 19 18 44 44 H 1.07992 * 119.59243 * 180.24823 * 24 23 22 45 45 H 1.08001 * 120.40187 * 179.71770 * 25 24 23 46 46 H 1.08007 * 120.79898 * 180.02562 * 26 25 24 47 47 H 1.09001 * 110.51013 * 143.23238 * 29 18 17 48 48 H 1.08999 * 110.51003 * 265.95433 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9296 -3.5385 0.6442 12 6 2.5604 -3.9000 -1.3839 13 6 1.4878 -4.4501 -2.3070 14 6 0.8398 -5.6837 -1.6933 15 6 0.1578 -5.3216 -0.3733 16 1 -0.7077 -4.6767 -0.5255 17 6 -0.2031 -6.6556 0.3319 18 7 0.9300 -6.9950 1.2102 19 6 1.0137 -8.0820 2.0026 20 8 2.0020 -8.2625 2.6820 21 6 -0.1181 -9.0764 2.0396 22 6 0.2256 -10.1933 2.9913 23 7 0.8537 -11.2623 2.5424 24 6 1.1789 -12.2615 3.3387 25 6 0.8598 -12.2281 4.6834 26 6 0.1948 -11.1242 5.1930 27 6 -0.1269 -10.0883 4.3257 28 9 -0.7746 -8.9925 4.7785 29 6 1.9622 -5.9461 1.0714 30 6 1.1741 -4.7046 0.6018 31 1 0.6404 -4.2786 1.4514 32 1 -0.4850 0.8400 -0.0004 33 1 0.3554 -2.3880 0.0005 34 1 3.3846 -4.6120 -1.3400 35 1 2.9316 -2.9621 -1.7969 36 1 1.9375 -4.7173 -3.2633 37 1 0.7269 -3.6869 -2.4705 38 1 1.6039 -6.4391 -1.5096 39 1 0.0981 -6.0814 -2.3859 40 1 -0.3494 -7.4425 -0.4081 41 1 -1.1088 -6.5282 0.9247 42 1 -1.0278 -8.5792 2.3763 43 1 -0.2755 -9.4850 1.0415 44 1 1.6967 -13.1187 2.9347 45 1 1.1253 -13.0523 5.3288 46 1 -0.0668 -11.0706 6.2395 47 1 2.4422 -5.7534 2.0308 48 1 2.7016 -6.2344 0.3242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992799900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:20 Heat of formation + Delta-G solvation = -33.114880 kcal Electronic energy + Delta-G solvation = -30706.066206 eV Core-core repulsion = 26482.323152 eV Total energy + Delta-G solvation = -4223.743054 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.26117 -40.78413 -40.24754 -38.59546 -35.70429 -33.59690 -33.53019 -32.24872 -31.56820 -30.81930 -29.39386 -28.37536 -26.61629 -24.75852 -23.92954 -23.31389 -22.48517 -22.02976 -21.06261 -19.35435 -18.06661 -17.97211 -17.58573 -17.24481 -17.03366 -16.66669 -16.06597 -15.97287 -15.34960 -14.91245 -14.58906 -14.32838 -14.08842 -14.04017 -13.89732 -13.70255 -13.52616 -13.46359 -13.37583 -12.95818 -12.68338 -12.59359 -12.38529 -12.12805 -11.84255 -11.69528 -11.32634 -11.16662 -10.91305 -10.83975 -10.68992 -10.30814 -10.16168 -10.05740 -9.97085 -9.92939 -9.79886 -9.60402 -9.51000 -9.17200 -8.84660 -8.59550 -6.93091 -5.75625 -3.03304 0.54218 0.73142 2.59638 2.85303 3.33694 3.43878 3.49805 3.50788 3.65207 3.90291 4.21070 4.32454 4.43443 4.54383 4.59700 4.60105 4.86200 4.90403 4.96543 5.05496 5.20093 5.27941 5.33401 5.39697 5.46035 5.47936 5.55298 5.59551 5.61296 5.69882 5.79952 5.82678 5.87882 5.96420 6.04108 6.13057 6.22819 6.23591 6.34461 6.39558 6.43679 6.52221 6.81416 6.83527 7.01255 7.18975 7.48134 7.51594 7.71526 8.11450 8.43248 9.54793 10.12048 10.47615 11.47134 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.002292 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.970286 B =12210.836886 C =12835.239090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.188 3.812 11 H 0.039 0.961 12 C -0.126 4.126 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.088 4.088 16 H 0.101 0.899 17 C 0.098 3.902 18 N -0.614 5.614 19 C 0.537 3.463 20 O -0.539 6.539 21 C -0.092 4.092 22 C 0.127 3.873 23 N -0.448 5.448 24 C 0.093 3.907 25 C -0.147 4.147 26 C -0.108 4.108 27 C 0.062 3.938 28 F -0.126 7.126 29 C 0.115 3.885 30 C -0.089 4.089 31 H 0.085 0.915 32 H 0.254 0.746 33 H 0.382 0.618 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.165 0.835 45 H 0.145 0.855 46 H 0.148 0.852 47 H 0.077 0.923 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 -25.613 4.122 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.368 5.368 10 C 0.079 3.921 11 H 0.057 0.943 12 C -0.166 4.166 13 C -0.147 4.147 14 C -0.146 4.146 15 C -0.107 4.107 16 H 0.119 0.881 17 C -0.025 4.025 18 N -0.348 5.348 19 C 0.325 3.675 20 O -0.417 6.417 21 C -0.133 4.133 22 C -0.013 4.013 23 N -0.157 5.157 24 C -0.065 4.065 25 C -0.166 4.166 26 C -0.135 4.135 27 C 0.041 3.959 28 F -0.104 7.104 29 C -0.007 4.007 30 C -0.109 4.109 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.216 0.784 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.182 0.818 45 H 0.163 0.837 46 H 0.166 0.834 47 H 0.096 0.904 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.990 -25.645 3.694 25.986 hybrid contribution -0.201 1.235 0.984 1.591 sum -2.191 -24.411 4.678 24.951 Atomic orbital electron populations 1.69649 1.05039 1.25516 1.57997 1.24698 0.95477 0.97530 1.03269 0.86238 0.78698 0.84112 0.77447 1.21841 1.21881 1.20842 1.19210 0.90961 0.84130 1.42211 0.91285 1.42554 1.05655 0.99464 1.89162 1.18602 0.93763 0.86043 0.93733 0.94313 1.21204 0.97025 1.00616 0.97723 1.20997 0.99148 0.96964 0.97626 1.21448 0.99299 0.98319 0.95579 1.22124 0.99394 0.94169 0.95008 0.88108 1.22499 0.89084 0.97905 0.92969 1.48586 1.20423 1.22960 1.42843 1.19756 0.87914 0.80789 0.79072 1.90722 1.32872 1.75207 1.42860 1.20539 0.98821 0.92763 1.01155 1.20627 0.95689 0.94395 0.90546 1.67480 1.09121 1.00098 1.38959 1.22820 0.96766 0.96606 0.90296 1.22081 0.98835 0.98648 0.97066 1.21653 0.98247 0.92830 1.00732 1.18521 0.98411 0.85490 0.93516 1.91536 1.78459 1.51176 1.89274 1.22324 0.90718 0.86067 1.01597 1.21551 0.96503 0.94084 0.98719 0.89704 0.93626 0.78413 0.94443 0.90930 0.93237 0.91411 0.92377 0.92394 0.91116 0.91329 0.86907 0.86347 0.81819 0.83675 0.83405 0.90450 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.90 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.28 9.33 -15.06 -0.14 -6.42 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -17.14 4.99 -56.85 -0.28 -17.43 16 10 C 0.19 3.52 2.24 -71.40 -0.16 3.36 16 11 H 0.04 0.78 7.96 -51.93 -0.41 0.36 16 12 C -0.13 -2.16 5.33 -29.16 -0.16 -2.32 16 13 C -0.11 -1.65 5.89 -27.70 -0.16 -1.82 16 14 C -0.11 -1.37 4.71 -27.15 -0.13 -1.49 16 15 C -0.09 -1.15 3.51 -89.13 -0.31 -1.47 16 16 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 17 C 0.10 1.08 5.90 -2.46 -0.01 1.06 16 18 N -0.61 -8.27 3.34 -169.78 -0.57 -8.84 16 19 C 0.54 7.75 7.85 -10.98 -0.09 7.66 16 20 O -0.54 -9.87 16.31 5.55 0.09 -9.78 16 21 C -0.09 -1.00 5.02 -29.03 -0.15 -1.15 16 22 C 0.13 1.51 5.28 -82.51 -0.44 1.07 16 23 N -0.45 -5.19 10.27 -9.42 -0.10 -5.28 16 24 C 0.09 0.78 11.18 -17.54 -0.20 0.58 16 25 C -0.15 -1.01 10.11 -39.45 -0.40 -1.41 16 26 C -0.11 -0.91 10.16 -39.22 -0.40 -1.31 16 27 C 0.06 0.70 7.27 -39.28 -0.29 0.41 16 28 F -0.13 -1.52 16.49 2.25 0.04 -1.48 16 29 C 0.12 1.71 5.84 -2.60 -0.02 1.70 16 30 C -0.09 -1.40 2.23 -91.14 -0.20 -1.60 16 31 H 0.08 1.49 8.07 -51.93 -0.42 1.07 16 32 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.38 9.58 7.73 -40.82 -0.32 9.26 16 34 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 35 H 0.07 1.43 7.53 -51.93 -0.39 1.04 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.06 0.73 6.99 -51.93 -0.36 0.36 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.64 7.76 -51.93 -0.40 0.23 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.11 1.02 7.63 -51.93 -0.40 0.62 16 43 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 46 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 47 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 48 H 0.07 1.02 7.42 -51.93 -0.39 0.64 16 LS Contribution 389.13 15.07 5.86 5.86 Total: -1.00 -33.38 389.13 -9.87 -43.25 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.28 Total: 6.94 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -3.34 Total: -3.62 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.22 Total: -58.36 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.38 -9.87 -43.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992799900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.135 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds