Wall clock time and date at job start Wed Apr 1 2020 04:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00286 * 2 1 4 4 H 1.48495 * 109.47316 * 269.99754 * 3 2 1 5 5 H 1.48505 * 109.47199 * 29.99837 * 3 2 1 6 6 H 1.48505 * 109.47325 * 149.99853 * 3 2 1 7 7 C 1.38816 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99719 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99832 * 179.97438 * 9 7 2 11 11 H 1.08996 * 107.81037 * 38.33411 * 10 9 7 12 12 C 1.49272 * 108.02149 * 282.76130 * 10 9 7 13 13 C 1.51832 * 112.65117 * 280.41106 * 12 10 9 14 14 C 1.52257 * 110.43245 * 306.92749 * 13 12 10 15 15 C 1.52923 * 110.24024 * 61.74340 * 14 13 12 16 16 H 1.08998 * 111.94451 * 67.92808 * 15 14 13 17 17 C 1.55142 * 107.00919 * 191.99496 * 15 14 13 18 18 N 1.47322 * 106.87180 * 92.01046 * 17 15 14 19 19 C 1.34777 * 125.74031 * 179.91244 * 18 17 15 20 20 O 1.21283 * 119.99750 * 179.69367 * 19 18 17 21 21 C 1.50702 * 119.99928 * 359.97438 * 19 18 17 22 22 C 1.50700 * 109.46869 * 179.72354 * 21 19 18 23 23 N 1.31865 * 119.63329 * 269.71917 * 22 21 19 24 24 C 1.31852 * 121.75173 * 179.75056 * 23 22 21 25 25 C 1.38238 * 120.81369 * 0.53673 * 24 23 22 26 26 C 1.38584 * 119.19063 * 359.73388 * 25 24 23 27 27 C 1.38422 * 119.63688 * 90.00241 * 22 21 19 28 28 F 1.35101 * 120.44193 * 359.94933 * 27 22 21 29 29 C 1.47817 * 108.51757 * 359.65418 * 18 17 15 30 30 C 1.49687 * 108.11689 * 154.99941 * 10 9 7 31 31 H 1.09003 * 109.18429 * 319.78330 * 30 10 9 32 32 H 0.96999 * 120.00089 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99854 * 359.97438 * 9 7 2 34 34 H 1.09008 * 108.87727 * 159.65379 * 12 10 9 35 35 H 1.09000 * 109.02129 * 41.26626 * 12 10 9 36 36 H 1.09003 * 109.31599 * 186.63113 * 13 12 10 37 37 H 1.09003 * 109.30844 * 67.21940 * 13 12 10 38 38 H 1.09002 * 109.33602 * 301.50960 * 14 13 12 39 39 H 1.09001 * 109.21645 * 181.90620 * 14 13 12 40 40 H 1.09006 * 110.08000 * 332.60519 * 17 15 14 41 41 H 1.08996 * 109.87880 * 211.31485 * 17 15 14 42 42 H 1.09004 * 109.46965 * 299.72211 * 21 19 18 43 43 H 1.08994 * 109.46990 * 59.72065 * 21 19 18 44 44 H 1.07992 * 119.59243 * 180.24823 * 24 23 22 45 45 H 1.08001 * 120.40187 * 179.71770 * 25 24 23 46 46 H 1.08007 * 120.79898 * 180.02562 * 26 25 24 47 47 H 1.09001 * 110.51013 * 143.23238 * 29 18 17 48 48 H 1.08999 * 110.51003 * 265.95433 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9296 -3.5385 0.6442 12 6 2.5604 -3.9000 -1.3839 13 6 1.4878 -4.4501 -2.3070 14 6 0.8398 -5.6837 -1.6933 15 6 0.1578 -5.3216 -0.3733 16 1 -0.7077 -4.6767 -0.5255 17 6 -0.2031 -6.6556 0.3319 18 7 0.9300 -6.9950 1.2102 19 6 1.0137 -8.0820 2.0026 20 8 2.0020 -8.2625 2.6820 21 6 -0.1181 -9.0764 2.0396 22 6 0.2256 -10.1933 2.9913 23 7 0.8537 -11.2623 2.5424 24 6 1.1789 -12.2615 3.3387 25 6 0.8598 -12.2281 4.6834 26 6 0.1948 -11.1242 5.1930 27 6 -0.1269 -10.0883 4.3257 28 9 -0.7746 -8.9925 4.7785 29 6 1.9622 -5.9461 1.0714 30 6 1.1741 -4.7046 0.6018 31 1 0.6404 -4.2786 1.4514 32 1 -0.4850 0.8400 -0.0004 33 1 0.3554 -2.3880 0.0005 34 1 3.3846 -4.6120 -1.3400 35 1 2.9316 -2.9621 -1.7969 36 1 1.9375 -4.7173 -3.2633 37 1 0.7269 -3.6869 -2.4705 38 1 1.6039 -6.4391 -1.5096 39 1 0.0981 -6.0814 -2.3859 40 1 -0.3494 -7.4425 -0.4081 41 1 -1.1088 -6.5282 0.9247 42 1 -1.0278 -8.5792 2.3763 43 1 -0.2755 -9.4850 1.0415 44 1 1.6967 -13.1187 2.9347 45 1 1.1253 -13.0523 5.3288 46 1 -0.0668 -11.0706 6.2395 47 1 2.4422 -5.7534 2.0308 48 1 2.7016 -6.2344 0.3242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992799900.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:19 Heat of formation + Delta-G solvation = -54.058074 kcal Electronic energy + Delta-G solvation = -30706.974371 eV Core-core repulsion = 26482.323152 eV Total energy + Delta-G solvation = -4224.651219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.07129 -41.83552 -41.09257 -39.77094 -37.13204 -35.19655 -34.30129 -33.26361 -32.97476 -31.96924 -30.87773 -29.34534 -27.89726 -26.21130 -24.85060 -24.54152 -23.51419 -23.20509 -22.34781 -20.39471 -19.32228 -19.16375 -18.74739 -18.31340 -18.21094 -17.49745 -17.16076 -16.87587 -16.55901 -16.27770 -16.01956 -15.52356 -15.37813 -15.10277 -14.95067 -14.86405 -14.73170 -14.40810 -14.16929 -14.12195 -13.97567 -13.78442 -13.28678 -13.16677 -13.05775 -12.95618 -12.82998 -12.67388 -12.61141 -12.34944 -12.17313 -11.96016 -11.78210 -11.30608 -11.20980 -11.12187 -10.89499 -10.83535 -10.69466 -10.64241 -9.89130 -9.70378 -8.94740 -7.91351 -5.17416 -0.13962 0.08309 1.46915 1.47342 1.52227 1.55475 1.85686 2.56981 2.62025 2.97300 3.20309 3.35379 3.43089 3.50084 3.54126 3.70044 3.76598 3.83114 3.98135 4.09711 4.20114 4.24240 4.29482 4.34768 4.39840 4.42502 4.53568 4.56449 4.62499 4.66446 4.71752 4.79694 4.84024 4.88218 4.91131 4.93122 5.00948 5.09123 5.15586 5.18210 5.29799 5.42892 5.52109 5.52818 5.61600 5.68662 5.73773 6.31623 6.45123 6.81224 7.02787 7.38312 8.14654 8.39323 9.31971 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.002292 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.970286 B =12210.836886 C =12835.239090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.074 4.074 3 Si 0.964 3.036 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.230 4.230 8 H 0.069 0.931 9 N -0.734 5.734 10 C 0.191 3.809 11 H 0.019 0.981 12 C -0.122 4.122 13 C -0.106 4.106 14 C -0.101 4.101 15 C -0.086 4.086 16 H 0.095 0.905 17 C 0.102 3.898 18 N -0.613 5.613 19 C 0.533 3.467 20 O -0.586 6.586 21 C -0.085 4.085 22 C 0.102 3.898 23 N -0.476 5.476 24 C 0.084 3.916 25 C -0.133 4.133 26 C -0.112 4.112 27 C 0.033 3.967 28 F -0.139 7.139 29 C 0.123 3.877 30 C -0.083 4.083 31 H 0.061 0.939 32 H 0.249 0.751 33 H 0.373 0.627 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.041 0.959 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.129 0.871 43 H 0.141 0.859 44 H 0.194 0.806 45 H 0.186 0.814 46 H 0.171 0.829 47 H 0.055 0.945 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 -28.611 3.711 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.794 3.206 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.200 1.200 7 C -0.363 4.363 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.083 3.917 11 H 0.037 0.963 12 C -0.161 4.161 13 C -0.143 4.143 14 C -0.138 4.138 15 C -0.105 4.105 16 H 0.113 0.887 17 C -0.019 4.019 18 N -0.346 5.346 19 C 0.323 3.677 20 O -0.467 6.467 21 C -0.125 4.125 22 C -0.037 4.037 23 N -0.184 5.184 24 C -0.073 4.073 25 C -0.152 4.152 26 C -0.138 4.138 27 C 0.012 3.988 28 F -0.118 7.118 29 C -0.001 4.001 30 C -0.103 4.103 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.206 0.794 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.147 0.853 43 H 0.158 0.842 44 H 0.211 0.789 45 H 0.203 0.797 46 H 0.188 0.812 47 H 0.074 0.926 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.085 -28.666 3.262 28.926 hybrid contribution -0.073 2.061 1.165 2.369 sum -2.158 -26.605 4.427 27.057 Atomic orbital electron populations 1.69789 1.06287 1.25714 1.59984 1.25411 0.96310 1.00550 1.04386 0.85272 0.77682 0.80316 0.77314 1.21543 1.22402 1.19970 1.19520 0.91164 0.85394 1.40178 0.91291 1.42701 1.05358 1.00424 1.89004 1.18770 0.93177 0.85134 0.94626 0.96254 1.21060 0.98526 0.99885 0.96646 1.20955 0.97810 0.97400 0.98154 1.21421 1.00003 0.97029 0.95347 1.22100 0.98287 0.95031 0.95039 0.88660 1.22644 0.88528 0.97384 0.93377 1.48637 1.20624 1.22301 1.43033 1.20416 0.88219 0.81050 0.78063 1.90690 1.34938 1.76334 1.44703 1.20558 0.97576 0.91849 1.02500 1.20754 0.96834 0.95027 0.91049 1.67481 1.09886 1.00845 1.40219 1.23472 0.96179 0.96645 0.91032 1.22532 0.96796 0.98913 0.96974 1.22061 0.97713 0.92421 1.01611 1.18860 0.99666 0.86122 0.94184 1.91492 1.78908 1.51987 1.89396 1.22096 0.91125 0.86229 1.00601 1.21300 0.96740 0.93654 0.98604 0.92100 0.94222 0.79445 0.92254 0.94009 0.91314 0.94032 0.91486 0.89463 0.87706 0.89636 0.85312 0.84153 0.78880 0.79656 0.81161 0.92604 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.53 13.06 21.65 0.28 -58.25 16 2 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 3 Si 0.96 46.55 29.55 68.60 2.03 48.58 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.23 -12.69 9.33 84.03 0.78 -11.91 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 9 N -0.73 -35.84 4.99 -333.77 -1.67 -37.51 16 10 C 0.19 7.33 2.24 42.74 0.10 7.43 16 11 H 0.02 0.81 7.96 -2.39 -0.02 0.79 16 12 C -0.12 -4.17 5.33 29.02 0.15 -4.01 16 13 C -0.11 -3.03 5.89 29.96 0.18 -2.86 16 14 C -0.10 -2.24 4.71 30.32 0.14 -2.09 16 15 C -0.09 -2.11 3.51 -9.83 -0.03 -2.15 16 16 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 17 C 0.10 1.96 5.90 86.96 0.51 2.47 16 18 N -0.61 -15.75 3.34 -809.45 -2.70 -18.45 16 19 C 0.53 15.00 7.85 87.66 0.69 15.69 16 20 O -0.59 -21.74 16.31 -3.04 -0.05 -21.79 16 21 C -0.09 -1.72 5.02 29.10 0.15 -1.58 16 22 C 0.10 2.33 5.28 42.60 0.22 2.56 16 23 N -0.48 -10.31 10.27 -183.72 -1.89 -12.20 16 24 C 0.08 1.21 11.18 84.69 0.95 2.16 16 25 C -0.13 -1.44 10.11 22.35 0.23 -1.21 16 26 C -0.11 -1.68 10.16 22.51 0.23 -1.45 16 27 C 0.03 0.72 7.27 22.47 0.16 0.89 16 28 F -0.14 -3.37 16.49 44.97 0.74 -2.63 16 29 C 0.12 3.64 5.84 86.59 0.51 4.15 16 30 C -0.08 -2.65 2.23 -11.13 -0.02 -2.67 16 31 H 0.06 2.23 8.07 -2.39 -0.02 2.21 16 32 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.37 19.43 7.73 -92.71 -0.72 18.71 16 34 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.04 1.68 7.53 -2.39 -0.02 1.66 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.42 6.99 -2.39 -0.02 1.41 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.10 1.39 7.76 -2.38 -0.02 1.38 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.13 2.11 7.63 -2.38 -0.02 2.10 16 43 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 45 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 46 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 47 H 0.06 1.89 8.05 -2.39 -0.02 1.87 16 48 H 0.08 2.19 7.42 -2.39 -0.02 2.17 16 Total: -1.00 -76.15 389.13 2.41 -73.75 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.26 Total: 26.88 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.40 Total: 1.62 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -5.97 Total: -126.41 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.74 Total: -2.63 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -76.15 2.41 -73.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992799900.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.687 kcal (2) G-P(sol) polarization free energy of solvation -76.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds