Wall clock time and date at job start Wed Apr 1 2020 04:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00108 * 2 1 4 4 H 1.48501 * 109.47419 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47042 * 300.00184 * 3 2 1 6 6 H 1.48504 * 109.47045 * 59.99801 * 3 2 1 7 7 C 1.38811 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99923 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00300 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99832 * 179.72132 * 9 7 2 11 11 H 1.08998 * 109.93343 * 329.97717 * 10 9 7 12 12 C 1.53817 * 109.94402 * 208.81016 * 10 9 7 13 13 C 1.52528 * 111.69845 * 298.16403 * 12 10 9 14 14 C 1.53842 * 111.66147 * 305.94882 * 13 12 10 15 15 C 1.51439 * 107.03779 * 57.20403 * 14 13 12 16 16 H 1.08994 * 109.87839 * 54.18748 * 15 14 13 17 17 C 1.52329 * 117.45222 * 180.72368 * 15 14 13 18 18 N 1.48892 * 105.54078 * 145.05207 * 17 15 14 19 19 C 1.34780 * 125.69186 * 177.03069 * 18 17 15 20 20 O 1.21288 * 119.99887 * 180.46214 * 19 18 17 21 21 C 1.50701 * 120.00164 * 0.46381 * 19 18 17 22 22 C 1.50704 * 109.46999 * 179.97438 * 21 19 18 23 23 N 1.31875 * 119.63447 * 90.00198 * 22 21 19 24 24 C 1.31838 * 121.74703 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.82602 * 359.97438 * 24 23 22 26 26 C 1.38597 * 119.18545 * 0.02562 * 25 24 23 27 27 C 1.38423 * 119.63746 * 269.72923 * 22 21 19 28 28 F 1.35099 * 120.44135 * 359.97438 * 27 22 21 29 29 C 1.48657 * 108.52241 * 357.42991 * 18 17 15 30 30 C 1.51617 * 109.94421 * 91.23228 * 10 9 7 31 31 H 1.08997 * 110.50965 * 174.57508 * 30 10 9 32 32 H 0.97000 * 120.00341 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99528 * 359.97438 * 9 7 2 34 34 H 1.09002 * 109.03268 * 58.73395 * 12 10 9 35 35 H 1.08994 * 109.03668 * 177.66744 * 12 10 9 36 36 H 1.09004 * 109.04344 * 66.51259 * 13 12 10 37 37 H 1.09007 * 109.03983 * 185.46022 * 13 12 10 38 38 H 1.09001 * 109.94069 * 176.58198 * 14 13 12 39 39 H 1.08991 * 109.94151 * 297.82271 * 14 13 12 40 40 H 1.09008 * 110.17139 * 264.41900 * 17 15 14 41 41 H 1.09000 * 110.17226 * 26.21706 * 17 15 14 42 42 H 1.08992 * 109.47143 * 299.99976 * 21 19 18 43 43 H 1.09002 * 109.46837 * 60.00058 * 21 19 18 44 44 H 1.08001 * 119.58683 * 180.02562 * 24 23 22 45 45 H 1.07999 * 120.40825 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.79565 * 179.97438 * 26 25 24 47 47 H 1.09003 * 110.62462 * 216.73513 * 29 18 17 48 48 H 1.09004 * 110.76565 * 93.77963 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0102 -3.5338 -0.5211 12 6 1.2205 -4.7431 -0.7011 13 6 -0.0917 -5.0001 0.0327 14 6 0.1425 -5.3253 1.5180 15 6 0.9036 -4.1590 2.1129 16 1 0.3681 -3.2296 1.9194 17 6 1.2783 -4.2436 3.5870 18 7 2.6024 -3.5723 3.7012 19 6 3.2845 -3.3683 4.8455 20 8 4.3558 -2.8001 4.8199 21 6 2.7162 -3.8461 6.1569 22 6 3.6668 -3.4975 7.2732 23 7 3.5478 -2.3397 7.8933 24 6 4.3561 -1.9924 8.8753 25 6 5.3663 -2.8381 9.2939 26 6 5.5243 -4.0642 8.6674 27 6 4.6517 -4.3984 7.6400 28 9 4.7645 -5.5854 7.0048 29 6 3.0399 -3.1568 2.3425 30 6 2.2955 -4.1231 1.4179 31 1 2.7546 -5.1117 1.4242 32 1 -0.4851 0.8400 -0.0004 33 1 0.3555 -2.3881 0.0005 34 1 1.0015 -4.4246 -1.7202 35 1 1.7953 -5.6686 -0.7339 36 1 -0.7208 -4.1130 -0.0423 37 1 -0.6037 -5.8397 -0.4377 38 1 -0.8136 -5.4440 2.0278 39 1 0.7301 -6.2385 1.6105 40 1 0.5342 -3.7280 4.1942 41 1 1.3589 -5.2860 3.8951 42 1 1.7551 -3.3636 6.3338 43 1 2.5791 -4.9269 6.1212 44 1 4.2268 -1.0356 9.3592 45 1 6.0248 -2.5466 10.0987 46 1 6.3051 -4.7449 8.9732 47 1 4.1181 -3.2749 2.2335 48 1 2.7451 -2.1272 2.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992799901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:23 Heat of formation + Delta-G solvation = -30.647103 kcal Electronic energy + Delta-G solvation = -31271.439735 eV Core-core repulsion = 27047.803692 eV Total energy + Delta-G solvation = -4223.636043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.16189 -40.52184 -39.99820 -38.41260 -35.36018 -33.65136 -33.39284 -32.10110 -31.37793 -30.48940 -29.07596 -28.14399 -26.80198 -24.60669 -23.80233 -23.36702 -22.57411 -20.85598 -20.74699 -19.11723 -18.69621 -17.89329 -17.46654 -17.14346 -16.89967 -16.57078 -15.84333 -15.64186 -15.09915 -14.75611 -14.48125 -14.23107 -14.16293 -13.96448 -13.82109 -13.65935 -13.37722 -13.34158 -12.91067 -12.66069 -12.52830 -12.30328 -12.21617 -11.96602 -11.78081 -11.53849 -11.34994 -11.13225 -10.87046 -10.73164 -10.38006 -10.27703 -10.16495 -10.07652 -9.90114 -9.80100 -9.63500 -9.51110 -9.35313 -9.03090 -8.89398 -8.23364 -6.98062 -5.79150 -3.06865 0.67971 0.86370 2.89402 3.10418 3.44571 3.51323 3.52595 3.53186 3.78625 4.06418 4.34082 4.45701 4.59010 4.62476 4.67001 4.84835 5.05624 5.08414 5.16266 5.21837 5.36470 5.41101 5.47572 5.53391 5.58359 5.59747 5.66760 5.71824 5.74654 5.82051 5.87004 5.97249 6.01300 6.06444 6.13317 6.26637 6.34288 6.36707 6.40299 6.53201 6.64829 6.66137 6.79187 6.88349 6.88401 7.12352 7.64836 7.71311 7.84178 8.39894 8.42497 9.52195 10.08367 10.43304 11.43080 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.003304 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.885841 B = 8472.663527 C =10219.523596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.716 5.716 10 C 0.188 3.812 11 H 0.054 0.946 12 C -0.122 4.122 13 C -0.114 4.114 14 C -0.097 4.097 15 C -0.109 4.109 16 H 0.105 0.895 17 C 0.112 3.888 18 N -0.615 5.615 19 C 0.534 3.466 20 O -0.544 6.544 21 C -0.093 4.093 22 C 0.132 3.868 23 N -0.447 5.447 24 C 0.094 3.906 25 C -0.149 4.149 26 C -0.109 4.109 27 C 0.059 3.941 28 F -0.128 7.128 29 C 0.118 3.882 30 C -0.118 4.118 31 H 0.065 0.935 32 H 0.254 0.746 33 H 0.385 0.615 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.165 0.835 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.063 0.937 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -13.584 15.236 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.357 5.357 10 C 0.077 3.923 11 H 0.072 0.928 12 C -0.161 4.161 13 C -0.152 4.152 14 C -0.135 4.135 15 C -0.128 4.128 16 H 0.123 0.877 17 C -0.010 4.010 18 N -0.349 5.349 19 C 0.321 3.679 20 O -0.422 6.422 21 C -0.134 4.134 22 C -0.008 4.008 23 N -0.155 5.155 24 C -0.063 4.063 25 C -0.169 4.169 26 C -0.135 4.135 27 C 0.038 3.962 28 F -0.107 7.107 29 C -0.002 4.002 30 C -0.140 4.140 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.220 0.780 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.136 0.864 43 H 0.128 0.872 44 H 0.182 0.818 45 H 0.163 0.837 46 H 0.165 0.835 47 H 0.081 0.919 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.121 -12.580 14.984 19.994 hybrid contribution 0.843 0.180 0.268 0.903 sum 4.964 -12.400 15.252 20.274 Atomic orbital electron populations 1.69651 1.05040 1.25550 1.57611 1.24681 0.95431 0.97546 1.02862 0.86219 0.79064 0.84461 0.77133 1.20477 1.21928 1.21904 1.19264 0.91023 0.84041 1.42576 0.91077 1.42455 1.05757 0.99485 1.88028 1.19911 0.94863 0.86560 0.91013 0.92756 1.21814 0.96269 0.98319 0.99652 1.21462 0.98030 1.01226 0.94470 1.21251 0.99375 0.96911 0.95972 1.21870 0.97781 1.01297 0.91824 0.87691 1.21877 0.84227 0.96410 0.98514 1.49339 1.20632 1.57829 1.07115 1.19691 0.84683 0.79631 0.83891 1.90708 1.22105 1.42884 1.86464 1.20555 0.99357 1.03560 0.89889 1.20679 0.94516 0.89624 0.96003 1.67512 1.26400 1.14824 1.06748 1.22839 0.90957 0.99739 0.92811 1.22069 0.99629 0.93936 1.01232 1.21617 0.98702 0.98217 0.94972 1.18504 0.98591 0.83730 0.95392 1.91511 1.95335 1.43163 1.80654 1.22187 0.98312 1.01195 0.78509 1.22813 0.94809 0.97840 0.98581 0.91704 0.93593 0.77990 0.91873 0.92859 0.91383 0.92890 0.92263 0.92424 0.91365 0.91981 0.86433 0.87246 0.81832 0.83742 0.83528 0.91873 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.24 -6.21 8.10 -15.06 -0.12 -6.33 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -16.23 3.83 -53.70 -0.21 -16.43 16 10 C 0.19 3.42 3.01 -68.21 -0.21 3.21 16 11 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 12 C -0.12 -1.85 5.51 -26.55 -0.15 -1.99 16 13 C -0.11 -1.59 5.57 -26.53 -0.15 -1.74 16 14 C -0.10 -1.23 5.71 -27.08 -0.15 -1.39 16 15 C -0.11 -1.66 2.21 -90.36 -0.20 -1.86 16 16 H 0.11 1.99 6.55 -51.93 -0.34 1.65 16 17 C 0.11 1.55 6.29 -3.06 -0.02 1.53 16 18 N -0.62 -10.49 3.39 -170.31 -0.58 -11.07 16 19 C 0.53 9.44 7.86 -10.98 -0.09 9.35 16 20 O -0.54 -11.75 16.33 5.55 0.09 -11.66 16 21 C -0.09 -1.25 5.03 -29.03 -0.15 -1.40 16 22 C 0.13 1.85 5.28 -82.50 -0.44 1.41 16 23 N -0.45 -6.29 10.27 -9.42 -0.10 -6.39 16 24 C 0.09 0.99 11.18 -17.55 -0.20 0.79 16 25 C -0.15 -1.27 10.11 -39.45 -0.40 -1.67 16 26 C -0.11 -1.06 10.16 -39.21 -0.40 -1.46 16 27 C 0.06 0.76 7.27 -39.28 -0.29 0.47 16 28 F -0.13 -1.66 16.49 2.25 0.04 -1.63 16 29 C 0.12 2.26 6.44 -2.82 -0.02 2.24 16 30 C -0.12 -1.96 2.36 -89.89 -0.21 -2.17 16 31 H 0.06 0.99 8.01 -51.93 -0.42 0.57 16 32 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.39 9.29 5.97 -40.82 -0.24 9.05 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.09 7.03 -51.93 -0.36 0.73 16 37 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.66 8.03 -51.93 -0.42 0.25 16 40 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 41 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 42 H 0.12 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.11 1.19 7.62 -51.93 -0.40 0.79 16 44 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 45 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.06 1.23 8.07 -51.93 -0.42 0.81 16 48 H 0.10 2.34 6.14 -51.93 -0.32 2.02 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -32.78 384.54 -9.63 -42.41 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -7.10 Total: 9.18 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -3.27 Total: -1.34 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.16 Total: -60.17 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.78 -9.63 -42.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992799901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.762 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds