Wall clock time and date at job start Wed Apr 1 2020 04:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00108 * 2 1 4 4 H 1.48501 * 109.47419 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47042 * 300.00184 * 3 2 1 6 6 H 1.48504 * 109.47045 * 59.99801 * 3 2 1 7 7 C 1.38811 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99923 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00300 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99832 * 179.72132 * 9 7 2 11 11 H 1.08998 * 109.93343 * 329.97717 * 10 9 7 12 12 C 1.53817 * 109.94402 * 208.81016 * 10 9 7 13 13 C 1.52528 * 111.69845 * 298.16403 * 12 10 9 14 14 C 1.53842 * 111.66147 * 305.94882 * 13 12 10 15 15 C 1.51439 * 107.03779 * 57.20403 * 14 13 12 16 16 H 1.08994 * 109.87839 * 54.18748 * 15 14 13 17 17 C 1.52329 * 117.45222 * 180.72368 * 15 14 13 18 18 N 1.48892 * 105.54078 * 145.05207 * 17 15 14 19 19 C 1.34780 * 125.69186 * 177.03069 * 18 17 15 20 20 O 1.21288 * 119.99887 * 180.46214 * 19 18 17 21 21 C 1.50701 * 120.00164 * 0.46381 * 19 18 17 22 22 C 1.50704 * 109.46999 * 179.97438 * 21 19 18 23 23 N 1.31875 * 119.63447 * 90.00198 * 22 21 19 24 24 C 1.31838 * 121.74703 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.82602 * 359.97438 * 24 23 22 26 26 C 1.38597 * 119.18545 * 0.02562 * 25 24 23 27 27 C 1.38423 * 119.63746 * 269.72923 * 22 21 19 28 28 F 1.35099 * 120.44135 * 359.97438 * 27 22 21 29 29 C 1.48657 * 108.52241 * 357.42991 * 18 17 15 30 30 C 1.51617 * 109.94421 * 91.23228 * 10 9 7 31 31 H 1.08997 * 110.50965 * 174.57508 * 30 10 9 32 32 H 0.97000 * 120.00341 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99528 * 359.97438 * 9 7 2 34 34 H 1.09002 * 109.03268 * 58.73395 * 12 10 9 35 35 H 1.08994 * 109.03668 * 177.66744 * 12 10 9 36 36 H 1.09004 * 109.04344 * 66.51259 * 13 12 10 37 37 H 1.09007 * 109.03983 * 185.46022 * 13 12 10 38 38 H 1.09001 * 109.94069 * 176.58198 * 14 13 12 39 39 H 1.08991 * 109.94151 * 297.82271 * 14 13 12 40 40 H 1.09008 * 110.17139 * 264.41900 * 17 15 14 41 41 H 1.09000 * 110.17226 * 26.21706 * 17 15 14 42 42 H 1.08992 * 109.47143 * 299.99976 * 21 19 18 43 43 H 1.09002 * 109.46837 * 60.00058 * 21 19 18 44 44 H 1.08001 * 119.58683 * 180.02562 * 24 23 22 45 45 H 1.07999 * 120.40825 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.79565 * 179.97438 * 26 25 24 47 47 H 1.09003 * 110.62462 * 216.73513 * 29 18 17 48 48 H 1.09004 * 110.76565 * 93.77963 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0102 -3.5338 -0.5211 12 6 1.2205 -4.7431 -0.7011 13 6 -0.0917 -5.0001 0.0327 14 6 0.1425 -5.3253 1.5180 15 6 0.9036 -4.1590 2.1129 16 1 0.3681 -3.2296 1.9194 17 6 1.2783 -4.2436 3.5870 18 7 2.6024 -3.5723 3.7012 19 6 3.2845 -3.3683 4.8455 20 8 4.3558 -2.8001 4.8199 21 6 2.7162 -3.8461 6.1569 22 6 3.6668 -3.4975 7.2732 23 7 3.5478 -2.3397 7.8933 24 6 4.3561 -1.9924 8.8753 25 6 5.3663 -2.8381 9.2939 26 6 5.5243 -4.0642 8.6674 27 6 4.6517 -4.3984 7.6400 28 9 4.7645 -5.5854 7.0048 29 6 3.0399 -3.1568 2.3425 30 6 2.2955 -4.1231 1.4179 31 1 2.7546 -5.1117 1.4242 32 1 -0.4851 0.8400 -0.0004 33 1 0.3555 -2.3881 0.0005 34 1 1.0015 -4.4246 -1.7202 35 1 1.7953 -5.6686 -0.7339 36 1 -0.7208 -4.1130 -0.0423 37 1 -0.6037 -5.8397 -0.4377 38 1 -0.8136 -5.4440 2.0278 39 1 0.7301 -6.2385 1.6105 40 1 0.5342 -3.7280 4.1942 41 1 1.3589 -5.2860 3.8951 42 1 1.7551 -3.3636 6.3338 43 1 2.5791 -4.9269 6.1212 44 1 4.2268 -1.0356 9.3592 45 1 6.0248 -2.5466 10.0987 46 1 6.3051 -4.7449 8.9732 47 1 4.1181 -3.2749 2.2335 48 1 2.7451 -2.1272 2.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992799901.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:22 Heat of formation + Delta-G solvation = -51.174015 kcal Electronic energy + Delta-G solvation = -31272.329849 eV Core-core repulsion = 27047.803692 eV Total energy + Delta-G solvation = -4224.526157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.07359 -41.67536 -41.06780 -39.75551 -36.81905 -35.35403 -34.31306 -33.10377 -32.96791 -31.72242 -30.65328 -29.26614 -28.12167 -26.03725 -25.13395 -24.60199 -23.57623 -22.14581 -21.99921 -20.43664 -20.09849 -19.11731 -18.75915 -18.32920 -18.15093 -17.52422 -16.97368 -16.81080 -16.55972 -16.27082 -15.86033 -15.65781 -15.41979 -15.14567 -14.95533 -14.76362 -14.54263 -14.25847 -14.18955 -14.08563 -13.75490 -13.56283 -13.34081 -13.16000 -13.07273 -12.92801 -12.88269 -12.68567 -12.65191 -12.38208 -12.12385 -11.80205 -11.60578 -11.35724 -11.15232 -11.08914 -10.88684 -10.84807 -10.64702 -10.57009 -9.90649 -9.65713 -8.93757 -7.93238 -5.16544 -0.15692 0.07673 1.40498 1.44040 1.50588 1.54551 1.89975 2.54715 2.60200 2.95318 3.19331 3.37767 3.42229 3.52118 3.66379 3.74155 3.84762 3.91974 3.96457 4.10953 4.26480 4.29567 4.34115 4.41642 4.43719 4.51144 4.54777 4.64555 4.67012 4.69816 4.72863 4.77281 4.86593 4.88760 4.96549 4.98616 5.11564 5.12768 5.18173 5.27778 5.42477 5.45973 5.50814 5.57703 5.59349 5.60365 5.78564 6.30973 6.51433 6.81659 7.06211 7.38785 8.16702 8.39943 9.29972 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.003304 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.885841 B = 8472.663527 C =10219.523596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.068 4.068 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.301 1.301 7 C -0.219 4.219 8 H 0.066 0.934 9 N -0.720 5.720 10 C 0.178 3.822 11 H 0.041 0.959 12 C -0.114 4.114 13 C -0.113 4.113 14 C -0.088 4.088 15 C -0.100 4.100 16 H 0.061 0.939 17 C 0.112 3.888 18 N -0.618 5.618 19 C 0.526 3.474 20 O -0.593 6.593 21 C -0.083 4.083 22 C 0.101 3.899 23 N -0.485 5.485 24 C 0.081 3.919 25 C -0.132 4.132 26 C -0.108 4.108 27 C 0.039 3.961 28 F -0.135 7.135 29 C 0.119 3.881 30 C -0.108 4.108 31 H 0.094 0.906 32 H 0.248 0.752 33 H 0.378 0.622 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.128 0.872 43 H 0.137 0.863 44 H 0.190 0.810 45 H 0.188 0.812 46 H 0.177 0.823 47 H 0.049 0.951 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 -16.485 17.183 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.780 3.220 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.229 1.229 7 C -0.351 4.351 8 H 0.084 0.916 9 N -0.361 5.361 10 C 0.069 3.931 11 H 0.060 0.940 12 C -0.153 4.153 13 C -0.150 4.150 14 C -0.125 4.125 15 C -0.119 4.119 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.350 5.350 19 C 0.315 3.685 20 O -0.475 6.475 21 C -0.123 4.123 22 C -0.038 4.038 23 N -0.193 5.193 24 C -0.077 4.077 25 C -0.151 4.151 26 C -0.134 4.134 27 C 0.017 3.983 28 F -0.113 7.113 29 C -0.003 4.003 30 C -0.130 4.130 31 H 0.112 0.888 32 H 0.057 0.943 33 H 0.211 0.789 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.146 0.854 43 H 0.155 0.845 44 H 0.207 0.793 45 H 0.206 0.794 46 H 0.195 0.805 47 H 0.067 0.933 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.660 -15.539 16.922 23.442 hybrid contribution 0.797 1.078 -0.274 1.368 sum 5.457 -14.461 16.649 22.717 Atomic orbital electron populations 1.69760 1.05955 1.25404 1.60236 1.25225 0.96114 0.99936 1.04751 0.85426 0.78285 0.81799 0.76490 1.20020 1.21825 1.22936 1.19464 0.90884 0.85409 1.39351 0.91649 1.42541 1.05474 1.00239 1.87844 1.20179 0.94544 0.85878 0.92522 0.94041 1.21734 0.96884 0.98075 0.98574 1.21454 0.96811 1.01004 0.95748 1.21242 1.00377 0.96344 0.94560 1.21770 0.96544 1.00834 0.92763 0.92095 1.22105 0.82648 0.98472 0.97706 1.49455 1.21761 1.57632 1.06189 1.20520 0.84105 0.78685 0.85172 1.90666 1.24418 1.45093 1.87289 1.20538 0.99401 1.05069 0.87259 1.20754 0.95755 0.90422 0.96848 1.67470 1.28275 1.15275 1.08326 1.23445 0.90950 1.01159 0.92113 1.22536 0.98794 0.92635 1.01150 1.22074 0.98448 0.99152 0.93773 1.18757 0.99355 0.83612 0.96563 1.91482 1.95432 1.43422 1.81011 1.21896 0.97791 0.99552 0.81025 1.22641 0.95680 0.98009 0.96674 0.88795 0.94313 0.78865 0.93115 0.89629 0.94442 0.90021 0.90292 0.89586 0.90415 0.87885 0.85437 0.84538 0.79318 0.79433 0.80550 0.93278 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.16 13.06 21.65 0.28 -57.88 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.95 47.96 29.55 68.60 2.03 49.99 16 4 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 6 H -0.30 -15.57 7.11 99.48 0.71 -14.87 16 7 C -0.22 -11.90 8.10 84.03 0.68 -11.22 16 8 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 9 N -0.72 -33.85 3.83 -323.80 -1.24 -35.09 16 10 C 0.18 6.49 3.01 44.81 0.13 6.62 16 11 H 0.04 1.60 8.05 -2.39 -0.02 1.58 16 12 C -0.11 -3.24 5.51 30.71 0.17 -3.07 16 13 C -0.11 -2.85 5.57 30.72 0.17 -2.68 16 14 C -0.09 -1.89 5.71 30.37 0.17 -1.72 16 15 C -0.10 -2.90 2.21 -10.62 -0.02 -2.92 16 16 H 0.06 2.35 6.55 -2.39 -0.02 2.34 16 17 C 0.11 2.85 6.29 85.69 0.54 3.39 16 18 N -0.62 -21.01 3.39 -811.12 -2.75 -23.77 16 19 C 0.53 18.78 7.86 87.66 0.69 19.47 16 20 O -0.59 -26.63 16.33 -3.06 -0.05 -26.68 16 21 C -0.08 -2.16 5.03 29.10 0.15 -2.02 16 22 C 0.10 2.79 5.28 42.60 0.22 3.02 16 23 N -0.48 -13.48 10.27 -183.71 -1.89 -15.37 16 24 C 0.08 1.56 11.18 84.69 0.95 2.51 16 25 C -0.13 -1.85 10.11 22.35 0.23 -1.62 16 26 C -0.11 -1.85 10.16 22.51 0.23 -1.62 16 27 C 0.04 0.94 7.27 22.47 0.16 1.10 16 28 F -0.13 -3.35 16.49 44.97 0.74 -2.61 16 29 C 0.12 4.70 6.44 85.98 0.55 5.26 16 30 C -0.11 -3.49 2.36 -10.32 -0.02 -3.51 16 31 H 0.09 2.55 8.01 -2.39 -0.02 2.53 16 32 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.38 18.99 5.97 -92.71 -0.55 18.44 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.04 1.18 7.03 -2.38 -0.02 1.17 16 37 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.47 8.03 -2.39 -0.02 1.45 16 40 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.10 1.87 8.08 -2.39 -0.02 1.85 16 42 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 43 H 0.14 2.69 7.62 -2.39 -0.02 2.67 16 44 H 0.19 2.41 8.06 -2.91 -0.02 2.38 16 45 H 0.19 0.94 8.06 -2.91 -0.02 0.91 16 46 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 47 H 0.05 2.01 8.07 -2.39 -0.02 2.00 16 48 H 0.06 2.69 6.14 -2.39 -0.01 2.68 16 Total: -1.00 -77.70 384.54 3.01 -74.68 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.43 Total: 29.16 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.47 Total: 7.56 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -5.60 Total: -132.11 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.74 Total: -2.61 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -77.70 3.01 -74.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992799901.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.511 kcal (2) G-P(sol) polarization free energy of solvation -77.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds