Wall clock time and date at job start Wed Apr 1 2020 04:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99773 * 2 1 4 4 H 1.48503 * 109.47143 * 240.00211 * 3 2 1 5 5 H 1.48499 * 109.47326 * 120.00022 * 3 2 1 6 6 H 1.48499 * 109.47308 * 359.97438 * 3 2 1 7 7 C 1.38810 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00113 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49415 * 35.00373 * 10 9 7 12 12 C 1.53039 * 109.50009 * 274.94164 * 10 9 7 13 13 C 1.53042 * 109.54076 * 178.71410 * 12 10 9 14 14 C 1.53190 * 109.33963 * 61.31192 * 13 12 10 15 15 N 1.46923 * 108.77765 * 305.38560 * 14 13 12 16 16 C 1.34780 * 120.63140 * 233.62835 * 15 14 13 17 17 O 1.21280 * 120.00136 * 174.72664 * 16 15 14 18 18 C 1.50697 * 119.99942 * 354.72764 * 16 15 14 19 19 H 1.09008 * 109.50610 * 40.84493 * 18 16 15 20 20 C 1.53100 * 109.50771 * 280.76039 * 18 16 15 21 21 O 1.43018 * 109.25985 * 183.21435 * 20 18 16 22 22 C 1.43014 * 113.73587 * 58.66894 * 21 20 18 23 23 C 1.53092 * 109.25976 * 301.33300 * 22 21 20 24 24 N 1.47004 * 109.51035 * 160.97716 * 18 16 15 25 25 C 1.46902 * 111.00153 * 302.32733 * 24 18 16 26 26 C 1.52999 * 109.47347 * 163.21788 * 25 24 18 27 27 F 1.39894 * 109.47756 * 305.11927 * 26 25 24 28 28 F 1.39904 * 109.46666 * 65.12076 * 26 25 24 29 29 C 1.46928 * 118.73977 * 53.60245 * 15 14 13 30 30 H 0.96997 * 119.99451 * 180.02562 * 1 2 3 31 31 H 0.96997 * 120.00284 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46071 * 298.69827 * 12 10 9 33 33 H 1.08999 * 109.46153 * 58.66137 * 12 10 9 34 34 H 1.09004 * 109.46803 * 301.36237 * 13 12 10 35 35 H 1.08996 * 109.52753 * 181.30244 * 13 12 10 36 36 H 1.08996 * 109.58974 * 185.59661 * 14 13 12 37 37 H 1.09009 * 109.58400 * 65.16952 * 14 13 12 38 38 H 1.08998 * 109.50606 * 303.14994 * 20 18 16 39 39 H 1.09001 * 109.50663 * 63.23511 * 20 18 16 40 40 H 1.09006 * 109.50535 * 61.26333 * 22 21 20 41 41 H 1.08998 * 109.50479 * 181.35007 * 22 21 20 42 42 H 1.09005 * 109.50773 * 176.78422 * 23 22 21 43 43 H 1.09008 * 109.50374 * 296.86658 * 23 22 21 44 44 H 1.08997 * 109.47580 * 283.22610 * 25 24 18 45 45 H 1.09000 * 109.46704 * 43.22404 * 25 24 18 46 46 H 1.09004 * 109.46999 * 185.11232 * 26 25 24 47 47 H 1.09003 * 109.58662 * 186.60455 * 29 15 14 48 48 H 1.09003 * 109.69792 * 66.25421 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 3.1039 1.6965 1.2125 6 1 1.2852 2.7464 -0.0006 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9694 -3.5512 0.5871 12 6 2.4200 -4.0364 -1.4394 13 6 3.2131 -5.3453 -1.4390 14 6 2.3483 -6.4623 -0.8463 15 7 1.8768 -6.0420 0.4802 16 6 2.0799 -6.8223 1.5602 17 8 1.7723 -6.4231 2.6634 18 6 2.6892 -8.1910 1.3971 19 1 3.4959 -8.1454 0.6654 20 6 1.6179 -9.1735 0.9164 21 8 2.1829 -10.4848 0.8353 22 6 2.7109 -10.9619 2.0758 23 6 3.7931 -9.9975 2.5683 24 7 3.2220 -8.6483 2.6886 25 6 4.2148 -7.7013 3.2136 26 6 4.4351 -7.9674 4.7041 27 9 3.2074 -7.9195 5.3730 28 9 5.0086 -9.2324 4.8721 29 6 1.1803 -4.7546 0.6073 30 1 -0.4849 -0.8401 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 1.5076 -4.1655 -2.0216 33 1 3.0246 -3.2452 -1.8827 34 1 4.1137 -5.2243 -0.8370 35 1 3.4906 -5.6035 -2.4609 36 1 2.9408 -7.3723 -0.7521 37 1 1.4930 -6.6463 -1.4966 38 1 0.7862 -9.1784 1.6209 39 1 1.2600 -8.8692 -0.0672 40 1 1.9109 -11.0188 2.8140 41 1 3.1433 -11.9519 1.9306 42 1 4.1583 -10.3264 3.5413 43 1 4.6182 -9.9820 1.8561 44 1 5.1561 -7.8280 2.6789 45 1 3.8531 -6.6823 3.0761 46 1 5.1020 -7.2089 5.1139 47 1 1.0022 -4.5378 1.6606 48 1 0.2288 -4.7977 0.0771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999800326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:32 Heat of formation + Delta-G solvation = -146.303959 kcal Electronic energy + Delta-G solvation = -32859.365224 eV Core-core repulsion = 28199.944699 eV Total energy + Delta-G solvation = -4659.420526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.07913 -47.01765 -40.95950 -39.20237 -37.51209 -36.01651 -34.84487 -32.68193 -31.77940 -31.19508 -30.66296 -28.20938 -26.61874 -25.77532 -24.57792 -23.54646 -22.66370 -22.28043 -21.46041 -20.10914 -19.11339 -17.83855 -17.70772 -17.39574 -17.26330 -17.03183 -16.54680 -16.29808 -15.76842 -15.39151 -15.10669 -14.93153 -14.43379 -14.29378 -14.20266 -14.09960 -13.99092 -13.66675 -13.61670 -13.41171 -13.36826 -13.08599 -12.91830 -12.56543 -12.39113 -12.22226 -12.06553 -11.80108 -11.42165 -11.28779 -11.04159 -10.86153 -10.81664 -10.62151 -10.48765 -10.36897 -10.14188 -10.01196 -9.66349 -9.26121 -8.97362 -8.81911 -8.55320 -7.11647 -6.15021 -3.16367 2.45549 2.72146 3.17373 3.48575 3.50113 3.52202 3.65753 3.69799 4.03228 4.21492 4.31520 4.44808 4.50938 4.58927 4.62580 4.70056 4.78677 4.87807 4.90339 4.99068 5.14747 5.15465 5.22929 5.32226 5.34558 5.38562 5.42829 5.47624 5.50999 5.55911 5.65033 5.65698 5.85415 5.98418 6.05578 6.22462 6.25835 6.38079 6.43984 6.52924 6.68522 6.73519 6.88794 7.37139 7.74724 8.11800 8.70124 9.15312 10.01649 10.15298 11.33063 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014823 B = 0.002863 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.503157 B = 9777.362053 C =10861.208430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.043 4.043 3 Si 1.080 2.920 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.284 1.284 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.732 5.732 10 C 0.175 3.825 11 H 0.050 0.950 12 C -0.137 4.137 13 C -0.132 4.132 14 C 0.102 3.898 15 N -0.603 5.603 16 C 0.514 3.486 17 O -0.512 6.512 18 C 0.032 3.968 19 H 0.076 0.924 20 C 0.078 3.922 21 O -0.378 6.378 22 C 0.062 3.938 23 C 0.002 3.998 24 N -0.508 5.508 25 C -0.003 4.003 26 C 0.274 3.726 27 F -0.187 7.187 28 F -0.209 7.209 29 C 0.106 3.894 30 H 0.255 0.745 31 H 0.367 0.633 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.046 0.954 44 H 0.064 0.936 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.093 0.907 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.779 -23.226 1.775 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.240 4.240 3 Si 0.910 3.090 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.210 1.210 7 C -0.463 4.463 8 H 0.082 0.918 9 N -0.375 5.375 10 C 0.064 3.936 11 H 0.068 0.932 12 C -0.177 4.177 13 C -0.171 4.171 14 C -0.021 4.021 15 N -0.338 5.338 16 C 0.300 3.700 17 O -0.387 6.387 18 C -0.080 4.080 19 H 0.093 0.907 20 C 0.000 4.000 21 O -0.296 6.296 22 C -0.015 4.015 23 C -0.126 4.126 24 N -0.234 5.234 25 C -0.132 4.132 26 C 0.220 3.780 27 F -0.168 7.168 28 F -0.191 7.191 29 C -0.017 4.017 30 H 0.067 0.933 31 H 0.201 0.799 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.134 0.866 46 H 0.131 0.869 47 H 0.112 0.888 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.258 -21.463 2.582 23.517 hybrid contribution 0.678 -1.505 -0.479 1.718 sum 9.935 -22.967 2.102 25.112 Atomic orbital electron populations 1.70889 1.06042 1.28486 1.53215 1.25781 0.97037 1.00995 1.00226 0.83248 0.74247 0.75623 0.75850 1.22266 1.22226 1.20976 1.19985 0.91929 0.85541 1.48857 0.91779 1.42316 1.04819 1.00498 1.89824 1.20391 0.94519 0.85488 0.93203 0.93211 1.22269 0.99635 0.95286 1.00556 1.21923 0.98696 0.95904 1.00593 1.21900 0.98618 0.97771 0.83786 1.48141 1.57552 1.20463 1.07604 1.20096 0.79548 0.85786 0.84551 1.90756 1.50069 1.73454 1.24402 1.22371 0.99475 0.94306 0.91830 0.90690 1.22535 0.93715 0.81274 1.02440 1.88013 1.78118 1.31104 1.32399 1.22731 0.95784 0.96798 0.86194 1.23294 0.96895 0.88688 1.03690 1.61838 1.34957 1.01858 1.24727 1.23389 0.95837 1.00258 0.93672 1.21846 0.81205 0.82359 0.92572 1.93037 1.45653 1.96391 1.81763 1.92861 1.84927 1.44932 1.96381 1.22024 0.94968 0.81311 1.03399 0.93331 0.79925 0.92518 0.91450 0.91965 0.91098 0.90247 0.90974 0.91235 0.87646 0.91804 0.87967 0.87180 0.93582 0.91756 0.86553 0.86932 0.88849 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.79 13.70 55.49 0.76 -28.03 16 2 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 3 Si 1.08 25.64 29.92 -169.99 -5.09 20.55 16 4 H -0.30 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.33 -9.15 9.93 -15.06 -0.15 -9.30 16 8 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.73 -17.81 5.12 -53.31 -0.27 -18.08 16 10 C 0.17 3.36 2.92 -67.82 -0.20 3.16 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.14 -2.23 5.47 -26.69 -0.15 -2.38 16 13 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 14 C 0.10 1.06 5.72 -3.71 -0.02 1.04 16 15 N -0.60 -8.14 2.97 -172.77 -0.51 -8.66 16 16 C 0.51 7.22 5.92 -10.99 -0.07 7.15 16 17 O -0.51 -9.17 14.38 5.56 0.08 -9.09 16 18 C 0.03 0.35 1.55 -68.76 -0.11 0.24 16 19 H 0.08 0.72 6.36 -51.92 -0.33 0.39 16 20 C 0.08 0.79 6.16 37.21 0.23 1.02 16 21 O -0.38 -3.84 10.83 -35.23 -0.38 -4.22 16 22 C 0.06 0.53 7.01 37.21 0.26 0.79 16 23 C 0.00 0.02 5.33 -3.72 -0.02 0.00 16 24 N -0.51 -5.72 4.06 -227.73 -0.92 -6.64 16 25 C 0.00 -0.03 4.94 -3.82 -0.02 -0.05 16 26 C 0.27 2.74 5.57 37.16 0.21 2.94 16 27 F -0.19 -2.57 17.17 2.25 0.04 -2.53 16 28 F -0.21 -2.08 14.49 2.25 0.03 -2.05 16 29 C 0.11 1.77 5.91 -3.71 -0.02 1.75 16 30 H 0.26 7.67 6.77 -40.82 -0.28 7.39 16 31 H 0.37 9.22 6.63 -40.82 -0.27 8.95 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.65 5.34 -51.93 -0.28 0.38 16 37 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.11 0.90 7.47 -51.93 -0.39 0.51 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.11 0.99 5.42 -51.93 -0.28 0.70 16 43 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 44 H 0.06 0.53 8.03 -51.93 -0.42 0.12 16 45 H 0.12 1.47 5.67 -51.93 -0.29 1.18 16 46 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.09 1.79 7.00 -51.93 -0.36 1.43 16 48 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 376.10 15.07 5.67 5.67 Total: -1.00 -33.88 376.10 -8.08 -41.96 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.17 Total: 7.80 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.31 Total: 3.34 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.95 Total: -61.41 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.30 Total: -13.32 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.07 Total: -4.58 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.09 Total: 20.55 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.88 -8.08 -41.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999800326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.345 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds