Wall clock time and date at job start Wed Apr 1 2020 04:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99773 * 2 1 4 4 H 1.48503 * 109.47143 * 240.00211 * 3 2 1 5 5 H 1.48499 * 109.47326 * 120.00022 * 3 2 1 6 6 H 1.48499 * 109.47308 * 359.97438 * 3 2 1 7 7 C 1.38810 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00113 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49415 * 35.00373 * 10 9 7 12 12 C 1.53039 * 109.50009 * 274.94164 * 10 9 7 13 13 C 1.53042 * 109.54076 * 178.71410 * 12 10 9 14 14 C 1.53190 * 109.33963 * 61.31192 * 13 12 10 15 15 N 1.46923 * 108.77765 * 305.38560 * 14 13 12 16 16 C 1.34780 * 120.63140 * 233.62835 * 15 14 13 17 17 O 1.21280 * 120.00136 * 174.72664 * 16 15 14 18 18 C 1.50697 * 119.99942 * 354.72764 * 16 15 14 19 19 H 1.09008 * 109.50610 * 40.84493 * 18 16 15 20 20 C 1.53100 * 109.50771 * 280.76039 * 18 16 15 21 21 O 1.43018 * 109.25985 * 183.21435 * 20 18 16 22 22 C 1.43014 * 113.73587 * 58.66894 * 21 20 18 23 23 C 1.53092 * 109.25976 * 301.33300 * 22 21 20 24 24 N 1.47004 * 109.51035 * 160.97716 * 18 16 15 25 25 C 1.46902 * 111.00153 * 302.32733 * 24 18 16 26 26 C 1.52999 * 109.47347 * 163.21788 * 25 24 18 27 27 F 1.39894 * 109.47756 * 305.11927 * 26 25 24 28 28 F 1.39904 * 109.46666 * 65.12076 * 26 25 24 29 29 C 1.46928 * 118.73977 * 53.60245 * 15 14 13 30 30 H 0.96997 * 119.99451 * 180.02562 * 1 2 3 31 31 H 0.96997 * 120.00284 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46071 * 298.69827 * 12 10 9 33 33 H 1.08999 * 109.46153 * 58.66137 * 12 10 9 34 34 H 1.09004 * 109.46803 * 301.36237 * 13 12 10 35 35 H 1.08996 * 109.52753 * 181.30244 * 13 12 10 36 36 H 1.08996 * 109.58974 * 185.59661 * 14 13 12 37 37 H 1.09009 * 109.58400 * 65.16952 * 14 13 12 38 38 H 1.08998 * 109.50606 * 303.14994 * 20 18 16 39 39 H 1.09001 * 109.50663 * 63.23511 * 20 18 16 40 40 H 1.09006 * 109.50535 * 61.26333 * 22 21 20 41 41 H 1.08998 * 109.50479 * 181.35007 * 22 21 20 42 42 H 1.09005 * 109.50773 * 176.78422 * 23 22 21 43 43 H 1.09008 * 109.50374 * 296.86658 * 23 22 21 44 44 H 1.08997 * 109.47580 * 283.22610 * 25 24 18 45 45 H 1.09000 * 109.46704 * 43.22404 * 25 24 18 46 46 H 1.09004 * 109.46999 * 185.11232 * 26 25 24 47 47 H 1.09003 * 109.58662 * 186.60455 * 29 15 14 48 48 H 1.09003 * 109.69792 * 66.25421 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 3.1039 1.6965 1.2125 6 1 1.2852 2.7464 -0.0006 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9694 -3.5512 0.5871 12 6 2.4200 -4.0364 -1.4394 13 6 3.2131 -5.3453 -1.4390 14 6 2.3483 -6.4623 -0.8463 15 7 1.8768 -6.0420 0.4802 16 6 2.0799 -6.8223 1.5602 17 8 1.7723 -6.4231 2.6634 18 6 2.6892 -8.1910 1.3971 19 1 3.4959 -8.1454 0.6654 20 6 1.6179 -9.1735 0.9164 21 8 2.1829 -10.4848 0.8353 22 6 2.7109 -10.9619 2.0758 23 6 3.7931 -9.9975 2.5683 24 7 3.2220 -8.6483 2.6886 25 6 4.2148 -7.7013 3.2136 26 6 4.4351 -7.9674 4.7041 27 9 3.2074 -7.9195 5.3730 28 9 5.0086 -9.2324 4.8721 29 6 1.1803 -4.7546 0.6073 30 1 -0.4849 -0.8401 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 1.5076 -4.1655 -2.0216 33 1 3.0246 -3.2452 -1.8827 34 1 4.1137 -5.2243 -0.8370 35 1 3.4906 -5.6035 -2.4609 36 1 2.9408 -7.3723 -0.7521 37 1 1.4930 -6.6463 -1.4966 38 1 0.7862 -9.1784 1.6209 39 1 1.2600 -8.8692 -0.0672 40 1 1.9109 -11.0188 2.8140 41 1 3.1433 -11.9519 1.9306 42 1 4.1583 -10.3264 3.5413 43 1 4.6182 -9.9820 1.8561 44 1 5.1561 -7.8280 2.6789 45 1 3.8531 -6.6823 3.0761 46 1 5.1020 -7.2089 5.1139 47 1 1.0022 -4.5378 1.6606 48 1 0.2288 -4.7977 0.0771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999800326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:31 Heat of formation + Delta-G solvation = -171.318792 kcal Electronic energy + Delta-G solvation = -32860.449949 eV Core-core repulsion = 28199.944699 eV Total energy + Delta-G solvation = -4660.505250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.91191 -47.89707 -41.95637 -40.17688 -38.75679 -36.88659 -36.50787 -34.17035 -32.84433 -32.53293 -31.43511 -29.84228 -27.46909 -26.79244 -25.91900 -25.13123 -23.60348 -23.43249 -22.42683 -21.32641 -20.23386 -19.39437 -18.72546 -18.58004 -18.21887 -17.84327 -17.37050 -17.25388 -16.95270 -16.58893 -16.13428 -15.87180 -15.78136 -15.55127 -15.41932 -15.31162 -15.01513 -14.87321 -14.81336 -14.76928 -14.25734 -14.20666 -13.89396 -13.57506 -13.34866 -13.31620 -12.98092 -12.82306 -12.75189 -12.56166 -12.33664 -12.19907 -12.05709 -11.91774 -11.85838 -11.79663 -11.54729 -11.34406 -11.00845 -10.92785 -10.64303 -9.78736 -9.57102 -9.15788 -8.41537 -5.36557 1.37544 1.56254 1.65660 1.67404 1.82841 2.37104 2.69380 2.76195 2.89223 3.27493 3.32807 3.38048 3.50843 3.60035 3.63484 3.75679 3.88941 3.91468 3.96107 3.97489 4.03277 4.13672 4.19648 4.21227 4.25723 4.37941 4.46908 4.48240 4.59695 4.62092 4.66288 4.73209 4.77490 4.80231 4.88484 4.95663 5.06620 5.30284 5.33089 5.45336 5.50586 5.58730 5.72023 5.96010 6.30275 6.46896 7.00986 7.06268 7.94753 8.05497 9.10220 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014823 B = 0.002863 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.503157 B = 9777.362053 C =10861.208430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.103 4.103 3 Si 1.126 2.874 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.293 1.293 7 C -0.329 4.329 8 H 0.064 0.936 9 N -0.748 5.748 10 C 0.173 3.827 11 H 0.029 0.971 12 C -0.127 4.127 13 C -0.122 4.122 14 C 0.100 3.900 15 N -0.600 5.600 16 C 0.514 3.486 17 O -0.559 6.559 18 C 0.043 3.957 19 H 0.099 0.901 20 C 0.081 3.919 21 O -0.381 6.381 22 C 0.059 3.941 23 C 0.006 3.994 24 N -0.533 5.533 25 C -0.001 4.001 26 C 0.269 3.731 27 F -0.213 7.213 28 F -0.208 7.208 29 C 0.120 3.880 30 H 0.244 0.756 31 H 0.360 0.640 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.126 0.874 40 H 0.053 0.947 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.145 0.855 47 H 0.061 0.939 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.007 -25.439 0.230 28.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.294 4.294 3 Si 0.951 3.049 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.219 1.219 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.390 5.390 10 C 0.064 3.936 11 H 0.047 0.953 12 C -0.168 4.168 13 C -0.161 4.161 14 C -0.021 4.021 15 N -0.333 5.333 16 C 0.302 3.698 17 O -0.436 6.436 18 C -0.069 4.069 19 H 0.117 0.883 20 C 0.003 3.997 21 O -0.299 6.299 22 C -0.018 4.018 23 C -0.121 4.121 24 N -0.259 5.259 25 C -0.130 4.130 26 C 0.215 3.785 27 F -0.195 7.195 28 F -0.189 7.189 29 C -0.004 4.004 30 H 0.055 0.945 31 H 0.192 0.808 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.144 0.856 40 H 0.071 0.929 41 H 0.147 0.853 42 H 0.127 0.873 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.163 0.837 47 H 0.079 0.921 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.536 -23.757 1.007 26.429 hybrid contribution 0.021 -0.909 0.045 0.911 sum 11.556 -24.666 1.051 27.259 Atomic orbital electron populations 1.70994 1.07167 1.27936 1.56125 1.27180 0.97107 1.04597 1.00505 0.82649 0.73424 0.71693 0.77137 1.20078 1.20661 1.21900 1.20290 0.92129 0.86820 1.46768 0.91785 1.42510 1.04669 1.01637 1.90156 1.20558 0.93483 0.84358 0.95166 0.95326 1.22057 1.00008 0.97321 0.97367 1.21877 0.97937 0.93464 1.02823 1.22206 0.99646 0.98310 0.81987 1.48171 1.57074 1.18932 1.09160 1.20714 0.78621 0.86774 0.83711 1.90741 1.51958 1.74595 1.26324 1.22323 1.00063 0.92001 0.92473 0.88324 1.22546 0.92817 0.81345 1.02994 1.88017 1.78089 1.30766 1.33023 1.22891 0.95460 0.97913 0.85520 1.23308 0.97289 0.87385 1.04094 1.61814 1.35989 1.02961 1.25123 1.23345 0.96669 0.98762 0.94208 1.22216 0.80684 0.83122 0.92483 1.92982 1.47616 1.96550 1.82346 1.92858 1.84697 1.45017 1.96361 1.21561 0.95102 0.82564 1.01153 0.94511 0.80795 0.92442 0.93840 0.92065 0.87761 0.86811 0.88984 0.93115 0.85601 0.92875 0.85295 0.87284 0.92113 0.89127 0.89110 0.83748 0.92059 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.26 13.70 21.65 0.30 -60.96 16 2 C -0.10 -5.97 5.50 84.86 0.47 -5.50 16 3 Si 1.13 52.03 29.92 68.60 2.05 54.08 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.33 -18.48 9.93 84.03 0.83 -17.64 16 8 H 0.06 3.53 7.83 -2.91 -0.02 3.50 16 9 N -0.75 -37.59 5.12 -322.58 -1.65 -39.24 16 10 C 0.17 6.78 2.92 45.07 0.13 6.91 16 11 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 12 C -0.13 -4.03 5.47 30.62 0.17 -3.86 16 13 C -0.12 -2.48 6.08 30.67 0.19 -2.30 16 14 C 0.10 1.70 5.72 86.36 0.49 2.19 16 15 N -0.60 -15.43 2.97 -818.91 -2.43 -17.87 16 16 C 0.51 14.05 5.92 87.66 0.52 14.57 16 17 O -0.56 -20.65 14.38 -3.03 -0.04 -20.69 16 18 C 0.04 0.84 1.55 44.18 0.07 0.91 16 19 H 0.10 1.47 6.36 -2.38 -0.02 1.45 16 20 C 0.08 1.43 6.16 72.02 0.44 1.88 16 21 O -0.38 -6.56 10.83 -148.98 -1.61 -8.18 16 22 C 0.06 0.85 7.01 72.01 0.50 1.36 16 23 C 0.01 0.09 5.33 86.31 0.46 0.55 16 24 N -0.53 -11.12 4.06 -874.42 -3.55 -14.67 16 25 C 0.00 -0.02 4.94 86.30 0.43 0.40 16 26 C 0.27 5.09 5.57 71.98 0.40 5.49 16 27 F -0.21 -5.94 17.17 44.97 0.77 -5.17 16 28 F -0.21 -3.79 14.49 44.97 0.65 -3.14 16 29 C 0.12 4.12 5.91 86.36 0.51 4.63 16 30 H 0.24 15.30 6.77 -92.71 -0.63 14.67 16 31 H 0.36 18.91 6.63 -92.71 -0.61 18.29 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.11 1.25 5.34 -2.39 -0.01 1.24 16 37 H 0.09 1.31 8.14 -2.38 -0.02 1.30 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.13 1.68 7.47 -2.39 -0.02 1.66 16 40 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.11 1.72 5.42 -2.38 -0.01 1.70 16 43 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.09 1.24 8.03 -2.39 -0.02 1.23 16 45 H 0.09 2.28 5.67 -2.39 -0.01 2.27 16 46 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.06 2.50 7.00 -2.39 -0.02 2.48 16 48 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -77.35 376.10 0.61 -76.74 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.51 Total: 29.51 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 5.61 Total: 9.59 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -7.34 Total: -132.74 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -1.66 Total: -28.87 kcal Atomic # 9 Polarization: -9.73 SS G_CDS: 1.42 Total: -8.31 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.05 Total: 54.08 kcal Total: -77.35 0.61 -76.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999800326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.580 kcal (2) G-P(sol) polarization free energy of solvation -77.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds