Wall clock time and date at job start Wed Apr 1 2020 04:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 119.99893 * 2 1 4 4 H 1.48502 * 109.46804 * 270.00502 * 3 2 1 5 5 H 1.48498 * 109.46823 * 29.99733 * 3 2 1 6 6 H 1.48501 * 109.47129 * 150.00195 * 3 2 1 7 7 C 1.38807 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00067 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99925 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.50001 * 325.06190 * 10 9 7 12 12 C 1.53038 * 109.52307 * 85.14672 * 10 9 7 13 13 C 1.53351 * 109.60506 * 181.34011 * 12 10 9 14 14 C 1.53196 * 109.15021 * 298.70926 * 13 12 10 15 15 N 1.46926 * 108.88989 * 54.57809 * 14 13 12 16 16 C 1.34776 * 120.62903 * 126.34259 * 15 14 13 17 17 O 1.21282 * 120.00277 * 174.15073 * 16 15 14 18 18 C 1.50699 * 120.00161 * 354.14903 * 16 15 14 19 19 H 1.09005 * 109.50993 * 316.88445 * 18 16 15 20 20 C 1.53103 * 109.50617 * 76.96844 * 18 16 15 21 21 O 1.43013 * 109.25600 * 176.78368 * 20 18 16 22 22 C 1.43014 * 113.74366 * 301.33004 * 21 20 18 23 23 C 1.53098 * 109.25643 * 58.67152 * 22 21 20 24 24 N 1.47010 * 109.25877 * 303.15438 * 23 22 21 25 25 C 1.46899 * 111.00146 * 182.39117 * 24 23 22 26 26 C 1.52997 * 109.47046 * 52.19033 * 25 24 23 27 27 F 1.39901 * 109.46977 * 293.73109 * 26 25 24 28 28 F 1.39897 * 109.47313 * 53.73157 * 26 25 24 29 29 C 1.46922 * 118.74024 * 306.32257 * 15 14 13 30 30 H 0.97002 * 120.00182 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99919 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.46398 * 301.35048 * 12 10 9 33 33 H 1.09002 * 109.46075 * 61.32403 * 12 10 9 34 34 H 1.09008 * 109.68089 * 178.74772 * 13 12 10 35 35 H 1.09004 * 109.47792 * 58.54818 * 13 12 10 36 36 H 1.08994 * 109.58553 * 294.72207 * 14 13 12 37 37 H 1.08998 * 109.58543 * 174.43882 * 14 13 12 38 38 H 1.08994 * 109.50701 * 296.71796 * 20 18 16 39 39 H 1.08998 * 109.50286 * 56.81122 * 20 18 16 40 40 H 1.08998 * 109.51180 * 178.60684 * 22 21 20 41 41 H 1.09003 * 109.50600 * 298.69774 * 22 21 20 42 42 H 1.09005 * 109.50651 * 63.08743 * 23 22 21 43 43 H 1.08994 * 109.50819 * 183.17251 * 23 22 21 44 44 H 1.09002 * 109.47475 * 172.18945 * 25 24 23 45 45 H 1.09003 * 109.47145 * 292.18741 * 25 24 23 46 46 H 1.09003 * 109.47101 * 173.73136 * 26 25 24 47 47 H 1.09005 * 109.58945 * 173.39857 * 29 15 14 48 48 H 1.08999 * 109.58401 * 293.67842 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9696 -3.5506 -0.5890 12 6 2.4196 -4.0386 1.4367 13 6 3.2156 -5.3494 1.4361 14 6 2.3490 -6.4633 0.8403 15 7 1.8773 -6.0413 -0.4856 16 6 2.0796 -6.8206 -1.5665 17 8 1.5944 -6.5137 -2.6348 18 6 2.9088 -8.0733 -1.4477 19 1 3.7950 -7.8677 -0.8471 20 6 2.0808 -9.1728 -0.7773 21 8 2.8461 -10.3802 -0.7351 22 6 3.2589 -10.8458 -2.0228 23 6 4.0988 -9.7632 -2.7057 24 7 3.3160 -8.5215 -2.7873 25 6 4.0665 -7.4711 -3.4883 26 6 4.5613 -8.0086 -4.8326 27 9 5.5045 -9.0181 -4.6126 28 9 3.4808 -8.5288 -5.5531 29 6 1.1805 -4.7540 -0.6108 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 3.0238 -3.2480 1.8816 33 1 1.5070 -4.1690 2.0182 34 1 3.4928 -5.6110 2.4574 35 1 4.1161 -5.2275 0.8341 36 1 1.4940 -6.6484 1.4905 37 1 2.9397 -7.3744 0.7452 38 1 1.8250 -8.8683 0.2375 39 1 1.1675 -9.3399 -1.3484 40 1 3.8550 -11.7511 -1.9087 41 1 2.3801 -11.0627 -2.6302 42 1 5.0044 -9.5851 -2.1256 43 1 4.3684 -10.0909 -3.7097 44 1 3.4174 -6.6119 -3.6573 45 1 4.9200 -7.1680 -2.8818 46 1 5.0208 -7.1995 -5.4005 47 1 1.0021 -4.5358 -1.6638 48 1 0.2290 -4.8005 -0.0811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999800333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:34 Heat of formation + Delta-G solvation = -142.150052 kcal Electronic energy + Delta-G solvation = -32807.785936 eV Core-core repulsion = 28148.545538 eV Total energy + Delta-G solvation = -4659.240399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.30932 -47.16570 -40.90633 -39.12573 -37.45188 -35.96286 -34.63239 -32.53919 -31.75204 -31.16495 -30.63834 -28.41114 -26.58804 -25.80324 -24.54099 -23.72082 -22.70231 -22.13247 -21.38462 -19.98687 -19.14607 -17.99535 -17.71377 -17.29744 -17.25179 -17.05486 -16.42980 -16.14379 -15.62028 -15.36973 -15.08250 -14.77506 -14.55152 -14.41558 -14.17093 -14.10683 -14.04732 -13.61453 -13.54919 -13.45321 -13.02521 -13.02153 -12.89639 -12.53563 -12.34361 -12.22210 -12.14516 -11.81080 -11.35934 -11.13750 -11.02687 -10.96025 -10.74281 -10.68473 -10.48023 -10.43026 -10.15393 -10.07019 -9.77911 -9.56888 -8.97497 -8.76870 -8.49984 -7.05206 -5.83049 -3.13184 2.49234 2.78410 3.23129 3.39489 3.44581 3.46288 3.52247 3.57185 3.95761 4.27449 4.31355 4.47011 4.53044 4.58043 4.62709 4.70871 4.82469 4.91551 4.93319 5.04065 5.15988 5.19300 5.28123 5.36348 5.44214 5.45326 5.48401 5.51987 5.58334 5.61391 5.67870 5.73230 5.94935 6.06730 6.15055 6.29505 6.31626 6.45212 6.49789 6.61256 6.72787 6.79956 6.96197 7.42974 7.63400 8.16021 8.34684 9.46000 10.00612 10.35546 11.39279 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.002831 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.495018 B = 9889.573393 C =10960.298005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.170 3.830 11 H 0.048 0.952 12 C -0.138 4.138 13 C -0.133 4.133 14 C 0.100 3.900 15 N -0.602 5.602 16 C 0.517 3.483 17 O -0.517 6.517 18 C 0.032 3.968 19 H 0.076 0.924 20 C 0.075 3.925 21 O -0.379 6.379 22 C 0.061 3.939 23 C -0.005 4.005 24 N -0.507 5.507 25 C -0.005 4.005 26 C 0.268 3.732 27 F -0.207 7.207 28 F -0.191 7.191 29 C 0.107 3.893 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.113 0.887 44 H 0.127 0.873 45 H 0.062 0.938 46 H 0.118 0.882 47 H 0.093 0.907 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.580 -22.246 -2.529 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.059 3.941 11 H 0.066 0.934 12 C -0.178 4.178 13 C -0.172 4.172 14 C -0.023 4.023 15 N -0.336 5.336 16 C 0.303 3.697 17 O -0.393 6.393 18 C -0.080 4.080 19 H 0.093 0.907 20 C -0.003 4.003 21 O -0.297 6.297 22 C -0.015 4.015 23 C -0.132 4.132 24 N -0.233 5.233 25 C -0.134 4.134 26 C 0.214 3.786 27 F -0.188 7.188 28 F -0.172 7.172 29 C -0.015 4.015 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.131 0.869 44 H 0.145 0.855 45 H 0.080 0.920 46 H 0.135 0.865 47 H 0.111 0.889 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.033 -22.145 -3.233 24.134 hybrid contribution 0.917 1.274 0.383 1.616 sum 9.950 -20.871 -2.850 23.296 Atomic orbital electron populations 1.69655 1.05117 1.25816 1.57237 1.24749 0.95517 0.97721 1.02699 0.86195 0.78633 0.83791 0.77572 1.21645 1.21719 1.20759 1.19181 0.90933 0.83863 1.43264 0.91192 1.42305 1.05826 0.99466 1.88581 1.20454 0.94527 0.86005 0.93155 0.93362 1.22349 0.99640 0.95160 1.00670 1.21990 0.98653 0.96003 1.00543 1.21927 0.98696 0.97796 0.83840 1.48136 1.57494 1.20541 1.07477 1.20079 0.81287 0.84231 0.84110 1.90704 1.49087 1.72231 1.27240 1.22347 0.99297 0.95103 0.91203 0.90665 1.22640 0.93458 0.82888 1.01310 1.88009 1.72387 1.40432 1.28865 1.22758 0.98529 0.96090 0.84171 1.23483 0.95266 0.90481 1.03964 1.61967 1.41523 1.03691 1.16109 1.23507 0.99244 0.97211 0.93392 1.21940 0.77549 0.86093 0.93054 1.92871 1.66167 1.64249 1.95519 1.93023 1.56460 1.88570 1.79149 1.22038 0.95125 0.80977 1.03403 0.93388 0.78137 0.91507 0.92347 0.91136 0.92000 0.90870 0.90243 0.87525 0.91255 0.88056 0.91869 0.93491 0.86897 0.85484 0.91957 0.86458 0.88898 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.72 -17.37 5.12 -53.31 -0.27 -17.65 16 10 C 0.17 3.19 2.92 -67.81 -0.20 2.99 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.20 5.47 -26.53 -0.15 -2.35 16 13 C -0.13 -1.55 6.11 -26.45 -0.16 -1.71 16 14 C 0.10 1.05 5.49 -3.71 -0.02 1.03 16 15 N -0.60 -8.14 2.97 -172.77 -0.51 -8.65 16 16 C 0.52 7.25 6.30 -10.99 -0.07 7.18 16 17 O -0.52 -9.11 14.02 5.56 0.08 -9.04 16 18 C 0.03 0.36 1.52 -68.75 -0.10 0.26 16 19 H 0.08 0.77 7.03 -51.93 -0.37 0.40 16 20 C 0.07 0.76 5.97 37.21 0.22 0.98 16 21 O -0.38 -3.93 10.83 -35.23 -0.38 -4.31 16 22 C 0.06 0.54 7.01 37.21 0.26 0.80 16 23 C 0.00 -0.04 4.61 -3.71 -0.02 -0.06 16 24 N -0.51 -5.81 4.20 -227.73 -0.96 -6.76 16 25 C -0.01 -0.05 4.99 -3.83 -0.02 -0.07 16 26 C 0.27 2.46 5.16 37.16 0.19 2.65 16 27 F -0.21 -1.93 13.98 2.25 0.03 -1.90 16 28 F -0.19 -2.29 17.06 2.25 0.04 -2.25 16 29 C 0.11 1.79 5.89 -3.71 -0.02 1.77 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.67 4.72 -51.93 -0.24 0.42 16 38 H 0.11 0.90 6.35 -51.93 -0.33 0.57 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.11 1.08 5.17 -51.93 -0.27 0.81 16 44 H 0.13 1.64 5.91 -51.93 -0.31 1.33 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 1.76 7.04 -51.93 -0.37 1.39 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -32.18 374.93 -8.19 -40.37 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -7.24 Total: 8.00 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -0.33 Total: 6.43 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -1.02 Total: -59.89 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.30 Total: -13.34 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.07 Total: -4.16 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.18 -8.19 -40.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999800333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.780 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds