Wall clock time and date at job start Wed Apr 1 2020 04:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 119.99893 * 2 1 4 4 H 1.48502 * 109.46804 * 270.00502 * 3 2 1 5 5 H 1.48498 * 109.46823 * 29.99733 * 3 2 1 6 6 H 1.48501 * 109.47129 * 150.00195 * 3 2 1 7 7 C 1.38807 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00067 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99925 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.50001 * 325.06190 * 10 9 7 12 12 C 1.53038 * 109.52307 * 85.14672 * 10 9 7 13 13 C 1.53351 * 109.60506 * 181.34011 * 12 10 9 14 14 C 1.53196 * 109.15021 * 298.70926 * 13 12 10 15 15 N 1.46926 * 108.88989 * 54.57809 * 14 13 12 16 16 C 1.34776 * 120.62903 * 126.34259 * 15 14 13 17 17 O 1.21282 * 120.00277 * 174.15073 * 16 15 14 18 18 C 1.50699 * 120.00161 * 354.14903 * 16 15 14 19 19 H 1.09005 * 109.50993 * 316.88445 * 18 16 15 20 20 C 1.53103 * 109.50617 * 76.96844 * 18 16 15 21 21 O 1.43013 * 109.25600 * 176.78368 * 20 18 16 22 22 C 1.43014 * 113.74366 * 301.33004 * 21 20 18 23 23 C 1.53098 * 109.25643 * 58.67152 * 22 21 20 24 24 N 1.47010 * 109.25877 * 303.15438 * 23 22 21 25 25 C 1.46899 * 111.00146 * 182.39117 * 24 23 22 26 26 C 1.52997 * 109.47046 * 52.19033 * 25 24 23 27 27 F 1.39901 * 109.46977 * 293.73109 * 26 25 24 28 28 F 1.39897 * 109.47313 * 53.73157 * 26 25 24 29 29 C 1.46922 * 118.74024 * 306.32257 * 15 14 13 30 30 H 0.97002 * 120.00182 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99919 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.46398 * 301.35048 * 12 10 9 33 33 H 1.09002 * 109.46075 * 61.32403 * 12 10 9 34 34 H 1.09008 * 109.68089 * 178.74772 * 13 12 10 35 35 H 1.09004 * 109.47792 * 58.54818 * 13 12 10 36 36 H 1.08994 * 109.58553 * 294.72207 * 14 13 12 37 37 H 1.08998 * 109.58543 * 174.43882 * 14 13 12 38 38 H 1.08994 * 109.50701 * 296.71796 * 20 18 16 39 39 H 1.08998 * 109.50286 * 56.81122 * 20 18 16 40 40 H 1.08998 * 109.51180 * 178.60684 * 22 21 20 41 41 H 1.09003 * 109.50600 * 298.69774 * 22 21 20 42 42 H 1.09005 * 109.50651 * 63.08743 * 23 22 21 43 43 H 1.08994 * 109.50819 * 183.17251 * 23 22 21 44 44 H 1.09002 * 109.47475 * 172.18945 * 25 24 23 45 45 H 1.09003 * 109.47145 * 292.18741 * 25 24 23 46 46 H 1.09003 * 109.47101 * 173.73136 * 26 25 24 47 47 H 1.09005 * 109.58945 * 173.39857 * 29 15 14 48 48 H 1.08999 * 109.58401 * 293.67842 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9696 -3.5506 -0.5890 12 6 2.4196 -4.0386 1.4367 13 6 3.2156 -5.3494 1.4361 14 6 2.3490 -6.4633 0.8403 15 7 1.8773 -6.0413 -0.4856 16 6 2.0796 -6.8206 -1.5665 17 8 1.5944 -6.5137 -2.6348 18 6 2.9088 -8.0733 -1.4477 19 1 3.7950 -7.8677 -0.8471 20 6 2.0808 -9.1728 -0.7773 21 8 2.8461 -10.3802 -0.7351 22 6 3.2589 -10.8458 -2.0228 23 6 4.0988 -9.7632 -2.7057 24 7 3.3160 -8.5215 -2.7873 25 6 4.0665 -7.4711 -3.4883 26 6 4.5613 -8.0086 -4.8326 27 9 5.5045 -9.0181 -4.6126 28 9 3.4808 -8.5288 -5.5531 29 6 1.1805 -4.7540 -0.6108 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 3.0238 -3.2480 1.8816 33 1 1.5070 -4.1690 2.0182 34 1 3.4928 -5.6110 2.4574 35 1 4.1161 -5.2275 0.8341 36 1 1.4940 -6.6484 1.4905 37 1 2.9397 -7.3744 0.7452 38 1 1.8250 -8.8683 0.2375 39 1 1.1675 -9.3399 -1.3484 40 1 3.8550 -11.7511 -1.9087 41 1 2.3801 -11.0627 -2.6302 42 1 5.0044 -9.5851 -2.1256 43 1 4.3684 -10.0909 -3.7097 44 1 3.4174 -6.6119 -3.6573 45 1 4.9200 -7.1680 -2.8818 46 1 5.0208 -7.1995 -5.4005 47 1 1.0021 -4.5358 -1.6638 48 1 0.2290 -4.8005 -0.0811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999800333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:34 Heat of formation + Delta-G solvation = -165.672055 kcal Electronic energy + Delta-G solvation = -32808.805927 eV Core-core repulsion = 28148.545538 eV Total energy + Delta-G solvation = -4660.260389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.07742 -47.96757 -41.90951 -40.10535 -38.67584 -36.83942 -36.24421 -34.04462 -32.81135 -32.56101 -31.41633 -30.00343 -27.43639 -26.82179 -25.96194 -25.12881 -23.52432 -23.35590 -22.37436 -21.20443 -20.26690 -19.20155 -18.84201 -18.55795 -18.22670 -17.85762 -17.25868 -17.00936 -16.84419 -16.53181 -16.14047 -15.90621 -15.74613 -15.57748 -15.34578 -15.20093 -15.04218 -14.85900 -14.72091 -14.60538 -14.32479 -14.07662 -13.92293 -13.64402 -13.31864 -13.18528 -12.97234 -12.88843 -12.88491 -12.59050 -12.35258 -12.21934 -12.12587 -12.08835 -11.84904 -11.71162 -11.62456 -11.45050 -10.98688 -10.92304 -10.58819 -9.73336 -9.55286 -9.04088 -7.96398 -5.25956 1.40136 1.46344 1.47833 1.55869 1.72833 2.40592 2.55220 2.77957 2.81525 3.24837 3.35250 3.38776 3.51586 3.64831 3.73756 3.83646 3.89607 3.96545 4.01557 4.05684 4.09346 4.20647 4.23009 4.24829 4.35301 4.38967 4.51216 4.54534 4.63370 4.65685 4.74901 4.80404 4.83058 4.84678 4.90628 5.04861 5.14689 5.37883 5.39032 5.47576 5.54704 5.58729 5.72723 5.98130 6.25159 6.35278 7.05649 7.31301 8.04317 8.27956 9.26863 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.002831 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.495018 B = 9889.573393 C =10960.298005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.238 4.238 8 H 0.074 0.926 9 N -0.736 5.736 10 C 0.169 3.831 11 H 0.034 0.966 12 C -0.129 4.129 13 C -0.123 4.123 14 C 0.097 3.903 15 N -0.599 5.599 16 C 0.516 3.484 17 O -0.560 6.560 18 C 0.042 3.958 19 H 0.095 0.905 20 C 0.077 3.923 21 O -0.382 6.382 22 C 0.059 3.941 23 C 0.000 4.000 24 N -0.528 5.528 25 C -0.005 4.005 26 C 0.267 3.733 27 F -0.205 7.205 28 F -0.210 7.210 29 C 0.121 3.879 30 H 0.251 0.749 31 H 0.373 0.627 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.054 0.946 40 H 0.127 0.873 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.151 0.849 47 H 0.063 0.937 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.804 -24.203 -1.241 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.800 3.200 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.370 4.370 8 H 0.092 0.908 9 N -0.376 5.376 10 C 0.060 3.940 11 H 0.052 0.948 12 C -0.169 4.169 13 C -0.161 4.161 14 C -0.024 4.024 15 N -0.333 5.333 16 C 0.304 3.696 17 O -0.438 6.438 18 C -0.070 4.070 19 H 0.112 0.888 20 C 0.000 4.000 21 O -0.300 6.300 22 C -0.018 4.018 23 C -0.126 4.126 24 N -0.255 5.255 25 C -0.134 4.134 26 C 0.214 3.786 27 F -0.187 7.187 28 F -0.191 7.191 29 C -0.003 4.003 30 H 0.060 0.940 31 H 0.205 0.795 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.146 0.854 39 H 0.073 0.927 40 H 0.145 0.855 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.129 0.871 44 H 0.118 0.882 45 H 0.096 0.904 46 H 0.168 0.832 47 H 0.081 0.919 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.316 -24.165 -1.917 26.752 hybrid contribution 0.251 1.799 -0.054 1.817 sum 11.567 -22.366 -1.971 25.257 Atomic orbital electron populations 1.69809 1.06592 1.26091 1.59370 1.25538 0.96346 1.01010 1.03680 0.85179 0.77826 0.79655 0.77334 1.21675 1.22188 1.19248 1.19531 0.91278 0.85001 1.41208 0.90787 1.42494 1.05482 1.00764 1.88825 1.20613 0.93627 0.84686 0.95104 0.94833 1.22137 0.99970 0.97205 0.97586 1.21938 0.97933 0.93542 1.02722 1.22221 0.99680 0.98388 0.82092 1.48155 1.57037 1.19097 1.08977 1.20649 0.80789 0.84853 0.83310 1.90693 1.50762 1.73395 1.28957 1.22313 0.99343 0.93660 0.91692 0.88797 1.22673 0.92628 0.82633 1.02108 1.88012 1.72280 1.40219 1.29488 1.22908 0.98561 0.96733 0.83580 1.23480 0.95365 0.89667 1.04137 1.61941 1.42616 1.04544 1.16388 1.23444 0.99086 0.96397 0.94451 1.22192 0.77133 0.86666 0.92628 1.92868 1.65895 1.64375 1.95517 1.92984 1.57662 1.88924 1.79539 1.21583 0.95145 0.82267 1.01267 0.93993 0.79488 0.93579 0.92478 0.87899 0.91898 0.89060 0.87046 0.85357 0.92717 0.85539 0.92583 0.92699 0.87066 0.88175 0.90405 0.83176 0.91888 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.91 13.06 21.65 0.28 -58.62 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 3 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.24 -13.04 9.93 84.03 0.83 -12.21 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -36.45 5.12 -322.57 -1.65 -38.10 16 10 C 0.17 6.42 2.92 45.07 0.13 6.55 16 11 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 12 C -0.13 -3.98 5.47 30.72 0.17 -3.81 16 13 C -0.12 -2.45 6.11 30.78 0.19 -2.26 16 14 C 0.10 1.69 5.49 86.36 0.47 2.16 16 15 N -0.60 -15.43 2.97 -818.92 -2.43 -17.87 16 16 C 0.52 14.10 6.30 87.66 0.55 14.65 16 17 O -0.56 -20.28 14.02 -3.04 -0.04 -20.33 16 18 C 0.04 0.84 1.52 44.18 0.07 0.91 16 19 H 0.09 1.56 7.03 -2.38 -0.02 1.54 16 20 C 0.08 1.36 5.97 72.02 0.43 1.79 16 21 O -0.38 -6.74 10.83 -148.98 -1.61 -8.36 16 22 C 0.06 0.90 7.01 72.01 0.50 1.40 16 23 C 0.00 0.01 4.61 86.32 0.40 0.41 16 24 N -0.53 -11.39 4.20 -874.39 -3.67 -15.06 16 25 C -0.01 -0.11 4.99 86.30 0.43 0.32 16 26 C 0.27 4.59 5.16 71.98 0.37 4.96 16 27 F -0.21 -3.45 13.98 44.97 0.63 -2.83 16 28 F -0.21 -4.98 17.06 44.97 0.77 -4.21 16 29 C 0.12 4.12 5.89 86.36 0.51 4.62 16 30 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.37 19.94 7.80 -92.71 -0.72 19.22 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 1.31 4.72 -2.39 -0.01 1.30 16 38 H 0.13 1.66 6.35 -2.39 -0.02 1.64 16 39 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.11 1.93 5.17 -2.39 -0.01 1.92 16 44 H 0.10 2.63 5.91 -2.39 -0.01 2.62 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.06 2.52 7.04 -2.38 -0.02 2.50 16 48 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -72.39 374.93 0.08 -72.31 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.27 Total: 29.51 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 5.53 Total: 15.81 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -7.48 Total: -129.66 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -1.66 Total: -28.68 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 1.40 Total: -7.03 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -72.39 0.08 -72.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999800333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.361 kcal (2) G-P(sol) polarization free energy of solvation -72.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds