Wall clock time and date at job start Wed Apr 1 2020 04:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00088 * 2 1 4 4 H 1.48500 * 109.46953 * 240.00142 * 3 2 1 5 5 H 1.48492 * 109.47047 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47126 * 120.00263 * 3 2 1 7 7 C 1.38808 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00399 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00402 * 359.97438 * 7 2 1 10 10 C 1.47431 * 125.64731 * 348.18079 * 9 7 2 11 11 C 1.54905 * 104.83314 * 204.08839 * 10 9 7 12 12 C 1.55150 * 101.58360 * 322.99039 * 11 10 9 13 13 C 1.47025 * 125.65449 * 168.13692 * 9 7 2 14 14 H 1.08998 * 109.88027 * 59.40092 * 13 9 7 15 15 C 1.53008 * 109.87950 * 298.39676 * 13 9 7 16 16 C 1.53036 * 109.45761 * 174.08003 * 15 13 9 17 17 C 1.53185 * 109.31112 * 181.37369 * 16 15 13 18 18 N 1.46928 * 108.77631 * 305.36086 * 17 16 15 19 19 C 1.34774 * 120.63576 * 233.58886 * 18 17 16 20 20 O 1.21533 * 120.00035 * 176.75149 * 19 18 17 21 21 C 1.47998 * 119.99579 * 356.46951 * 19 18 17 22 22 N 1.32808 * 119.75664 * 323.64222 * 21 19 18 23 23 C 1.31435 * 121.66716 * 179.74995 * 22 21 19 24 24 C 1.38679 * 120.97778 * 0.52569 * 23 22 21 25 25 C 1.38452 * 119.39895 * 359.74280 * 24 23 22 26 26 C 1.38964 * 118.46526 * 359.97438 * 25 24 23 27 27 F 1.35095 * 120.50081 * 179.97438 * 26 25 24 28 28 C 1.46933 * 118.73608 * 53.86206 * 18 17 16 29 29 C 1.53040 * 109.44856 * 294.13867 * 15 13 9 30 30 H 0.96998 * 119.99655 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.36401 * 322.92887 * 10 9 7 32 32 H 1.09001 * 110.36702 * 85.14105 * 10 9 7 33 33 H 1.09006 * 111.00543 * 81.06811 * 11 10 9 34 34 H 1.09000 * 111.00726 * 204.91113 * 11 10 9 35 35 H 1.08995 * 110.72284 * 277.13746 * 12 11 10 36 36 H 1.09006 * 110.72305 * 153.86192 * 12 11 10 37 37 H 1.08997 * 109.45889 * 54.10308 * 15 13 9 38 38 H 1.08997 * 109.49836 * 61.42060 * 16 15 13 39 39 H 1.09004 * 109.49870 * 301.31886 * 16 15 13 40 40 H 1.09005 * 109.58870 * 185.57683 * 17 16 15 41 41 H 1.09002 * 109.59312 * 65.15219 * 17 16 15 42 42 H 1.07996 * 119.50613 * 180.24414 * 23 22 21 43 43 H 1.08007 * 120.30046 * 179.76116 * 24 23 22 44 44 H 1.08000 * 120.76665 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.58382 * 65.92753 * 28 18 17 46 46 H 1.08998 * 109.58346 * 186.35428 * 28 18 17 47 47 H 1.08995 * 109.50047 * 298.57510 * 29 15 13 48 48 H 1.09008 * 109.49609 * 58.63579 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1195 -2.5459 0.2454 11 6 -0.2797 -4.0030 0.7461 12 6 0.7698 -4.7475 -0.1208 13 6 1.9095 -3.7147 -0.2466 14 1 2.6838 -3.9217 0.4920 15 6 2.5064 -3.7674 -1.6545 16 6 3.2394 -5.0968 -1.8480 17 6 3.8646 -5.1317 -3.2460 18 7 2.8146 -4.8714 -4.2403 19 6 2.6132 -5.7229 -5.2654 20 8 1.7037 -5.5280 -6.0475 21 6 3.5035 -6.8919 -5.4421 22 7 4.7973 -6.7833 -5.1625 23 6 5.6207 -7.7983 -5.3012 24 6 5.1685 -9.0270 -5.7582 25 6 3.8284 -9.1859 -6.0674 26 6 2.9781 -8.0986 -5.9063 27 9 1.6631 -8.2077 -6.1962 28 6 1.9923 -3.6620 -4.0992 29 6 1.3845 -3.6464 -2.6884 30 1 -0.4849 0.8401 0.0004 31 1 -0.4533 -1.8434 1.0091 32 1 -0.6799 -2.3965 -0.6775 33 1 -0.0370 -4.0808 1.8060 34 1 -1.2848 -4.3758 0.5488 35 1 0.3587 -4.9895 -1.1008 36 1 1.1193 -5.6477 0.3850 37 1 3.2084 -2.9435 -1.7824 38 1 2.5329 -5.9203 -1.7448 39 1 4.0232 -5.1928 -1.0966 40 1 4.3029 -6.1135 -3.4259 41 1 4.6364 -4.3656 -3.3205 42 1 6.6658 -7.6722 -5.0598 43 1 5.8556 -9.8527 -5.8717 44 1 3.4525 -10.1329 -6.4255 45 1 2.6146 -2.7784 -4.2418 46 1 1.1949 -3.6737 -4.8421 47 1 0.6954 -4.4835 -2.5773 48 1 0.8475 -2.7103 -2.5347 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004586122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:21 Heat of formation + Delta-G solvation = -4.931062 kcal Electronic energy + Delta-G solvation = -31614.985984 eV Core-core repulsion = 27392.465072 eV Total energy + Delta-G solvation = -4222.520912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.25984 -40.95530 -39.54837 -38.29266 -36.34758 -33.44431 -32.78576 -32.07355 -31.52647 -30.59502 -29.32938 -27.66445 -25.49561 -24.56216 -24.01653 -23.57776 -22.85672 -21.36147 -20.31164 -19.69999 -18.48001 -18.01135 -17.73446 -17.28959 -16.70625 -16.35715 -15.88247 -15.60038 -15.10360 -14.95047 -14.64259 -14.39893 -14.03541 -13.95768 -13.83160 -13.72643 -13.56147 -13.16943 -12.97089 -12.78329 -12.51036 -12.09151 -11.97132 -11.84192 -11.46489 -11.19939 -10.94224 -10.89421 -10.71988 -10.48760 -10.41803 -10.34136 -10.16622 -10.08360 -9.85600 -9.73510 -9.61339 -9.43669 -9.39764 -9.38341 -8.56279 -8.45360 -6.73509 -5.68713 -3.03417 0.17410 0.55104 2.47542 2.84867 3.21754 3.41686 3.46706 3.47526 3.58801 3.88888 4.17267 4.22842 4.35862 4.51980 4.78117 5.07529 5.11161 5.20307 5.27426 5.30477 5.40811 5.46077 5.51630 5.52740 5.66586 5.74461 5.77248 5.85588 5.94407 5.96730 6.02469 6.08839 6.23328 6.24147 6.32526 6.40881 6.53401 6.56618 6.63317 6.68030 6.81311 6.97335 7.09417 7.17970 7.18984 7.43015 7.61868 7.66477 7.86385 8.07409 8.34461 9.25508 9.87264 10.56257 11.42335 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.002855 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.194271 B = 9803.969475 C =10157.555838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.223 4.223 8 H 0.073 0.927 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.150 4.150 12 C -0.132 4.132 13 C 0.168 3.832 14 H 0.031 0.969 15 C -0.094 4.094 16 C -0.131 4.131 17 C 0.109 3.891 18 N -0.582 5.582 19 C 0.566 3.434 20 O -0.529 6.529 21 C 0.058 3.942 22 N -0.424 5.424 23 C 0.084 3.916 24 C -0.124 4.124 25 C -0.116 4.116 26 C 0.103 3.897 27 F -0.110 7.110 28 C 0.110 3.890 29 C -0.118 4.118 30 H 0.252 0.748 31 H 0.073 0.927 32 H 0.022 0.978 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.172 0.828 43 H 0.151 0.849 44 H 0.154 0.846 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.061 0.939 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.411 -20.034 -9.067 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.351 4.351 8 H 0.091 0.909 9 N -0.317 5.317 10 C 0.047 3.953 11 C -0.189 4.189 12 C -0.169 4.169 13 C 0.060 3.940 14 H 0.048 0.952 15 C -0.115 4.115 16 C -0.170 4.170 17 C -0.014 4.014 18 N -0.313 5.313 19 C 0.351 3.649 20 O -0.405 6.405 21 C -0.081 4.081 22 N -0.135 5.135 23 C -0.076 4.076 24 C -0.144 4.144 25 C -0.143 4.143 26 C 0.080 3.920 27 F -0.088 7.088 28 C -0.011 4.011 29 C -0.156 4.156 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.189 0.811 43 H 0.168 0.832 44 H 0.172 0.828 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.075 -18.818 -9.171 23.232 hybrid contribution 0.095 0.005 -0.372 0.384 sum 10.170 -18.813 -9.543 23.418 Atomic orbital electron populations 1.69921 1.04877 1.25064 1.56715 1.24816 0.95609 0.97552 1.02214 0.86281 0.78541 0.83566 0.77858 1.21192 1.21723 1.21300 1.18893 0.90238 0.82375 1.43630 0.90932 1.44505 1.04598 1.00635 1.81979 1.21452 0.84907 0.90246 0.98656 1.23007 0.97257 0.99844 0.98751 1.22730 0.97186 0.97102 0.99919 1.20914 0.93671 0.86874 0.92536 0.95179 1.21603 0.96939 0.95534 0.97382 1.22047 1.00128 0.99344 0.95505 1.22044 0.89170 1.02798 0.87392 1.48001 1.35135 1.23077 1.25119 1.17687 0.83401 0.81743 0.82021 1.90828 1.31660 1.73646 1.44359 1.21435 0.91975 0.93647 1.01023 1.67913 1.01703 1.32028 1.11834 1.23015 1.00151 0.88256 0.96161 1.22301 0.95261 0.99548 0.97310 1.21714 0.93675 0.98728 1.00180 1.18650 0.79727 0.94562 0.99044 1.91613 1.30847 1.96281 1.90090 1.21937 0.94862 0.85041 0.99287 1.22007 0.98119 1.03638 0.91845 0.93753 0.90848 0.96035 0.92628 0.92712 0.91282 0.92934 0.90893 0.92137 0.91075 0.89002 0.91032 0.81096 0.83162 0.82795 0.91052 0.89368 0.92095 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.44 10.47 55.49 0.58 -25.86 16 2 C -0.01 -0.15 5.47 -17.43 -0.10 -0.24 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.22 -5.94 9.71 -15.06 -0.15 -6.08 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.59 -14.33 2.62 -162.56 -0.43 -14.76 16 10 C 0.17 4.10 5.46 -2.53 -0.01 4.09 16 11 C -0.15 -2.85 7.08 -24.59 -0.17 -3.03 16 12 C -0.13 -2.29 5.47 -24.90 -0.14 -2.43 16 13 C 0.17 3.28 2.87 -66.95 -0.19 3.09 16 14 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 15 C -0.09 -1.63 1.96 -90.58 -0.18 -1.80 16 16 C -0.13 -1.82 5.19 -26.62 -0.14 -1.96 16 17 C 0.11 1.42 5.86 -3.71 -0.02 1.40 16 18 N -0.58 -8.88 2.97 -173.56 -0.51 -9.40 16 19 C 0.57 9.12 7.37 -12.26 -0.09 9.03 16 20 O -0.53 -10.12 15.52 5.34 0.08 -10.03 16 21 C 0.06 0.75 5.95 -82.95 -0.49 0.26 16 22 N -0.42 -4.54 7.39 -9.76 -0.07 -4.61 16 23 C 0.08 0.57 11.18 -17.56 -0.20 0.37 16 24 C -0.12 -0.64 10.11 -39.34 -0.40 -1.04 16 25 C -0.12 -0.83 10.16 -39.23 -0.40 -1.23 16 26 C 0.10 1.18 7.27 -38.82 -0.28 0.90 16 27 F -0.11 -1.50 16.15 2.25 0.04 -1.46 16 28 C 0.11 1.81 6.47 -3.48 -0.02 1.79 16 29 C -0.12 -2.10 4.86 -26.39 -0.13 -2.23 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.07 1.97 6.73 -51.93 -0.35 1.62 16 32 H 0.02 0.55 8.11 -51.93 -0.42 0.13 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.19 5.29 -51.93 -0.27 0.91 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.41 7.82 -51.93 -0.41 1.00 16 38 H 0.06 0.84 7.56 -51.93 -0.39 0.45 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.09 4.86 -51.93 -0.25 0.84 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.17 0.60 8.06 -52.49 -0.42 0.17 16 43 H 0.15 0.24 8.06 -52.48 -0.42 -0.18 16 44 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.09 1.52 6.99 -51.93 -0.36 1.15 16 47 H 0.06 1.08 5.83 -51.93 -0.30 0.78 16 48 H 0.09 1.98 7.76 -51.92 -0.40 1.57 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -32.20 376.71 -9.70 -41.91 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.94 Total: 0.86 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -3.11 Total: 0.87 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.43 Total: -54.63 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.20 -9.70 -41.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004586122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.976 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds