Wall clock time and date at job start Wed Apr 1 2020 04:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00088 * 2 1 4 4 H 1.48500 * 109.46953 * 240.00142 * 3 2 1 5 5 H 1.48492 * 109.47047 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47126 * 120.00263 * 3 2 1 7 7 C 1.38808 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00399 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00402 * 359.97438 * 7 2 1 10 10 C 1.47431 * 125.64731 * 348.18079 * 9 7 2 11 11 C 1.54905 * 104.83314 * 204.08839 * 10 9 7 12 12 C 1.55150 * 101.58360 * 322.99039 * 11 10 9 13 13 C 1.47025 * 125.65449 * 168.13692 * 9 7 2 14 14 H 1.08998 * 109.88027 * 59.40092 * 13 9 7 15 15 C 1.53008 * 109.87950 * 298.39676 * 13 9 7 16 16 C 1.53036 * 109.45761 * 174.08003 * 15 13 9 17 17 C 1.53185 * 109.31112 * 181.37369 * 16 15 13 18 18 N 1.46928 * 108.77631 * 305.36086 * 17 16 15 19 19 C 1.34774 * 120.63576 * 233.58886 * 18 17 16 20 20 O 1.21533 * 120.00035 * 176.75149 * 19 18 17 21 21 C 1.47998 * 119.99579 * 356.46951 * 19 18 17 22 22 N 1.32808 * 119.75664 * 323.64222 * 21 19 18 23 23 C 1.31435 * 121.66716 * 179.74995 * 22 21 19 24 24 C 1.38679 * 120.97778 * 0.52569 * 23 22 21 25 25 C 1.38452 * 119.39895 * 359.74280 * 24 23 22 26 26 C 1.38964 * 118.46526 * 359.97438 * 25 24 23 27 27 F 1.35095 * 120.50081 * 179.97438 * 26 25 24 28 28 C 1.46933 * 118.73608 * 53.86206 * 18 17 16 29 29 C 1.53040 * 109.44856 * 294.13867 * 15 13 9 30 30 H 0.96998 * 119.99655 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.36401 * 322.92887 * 10 9 7 32 32 H 1.09001 * 110.36702 * 85.14105 * 10 9 7 33 33 H 1.09006 * 111.00543 * 81.06811 * 11 10 9 34 34 H 1.09000 * 111.00726 * 204.91113 * 11 10 9 35 35 H 1.08995 * 110.72284 * 277.13746 * 12 11 10 36 36 H 1.09006 * 110.72305 * 153.86192 * 12 11 10 37 37 H 1.08997 * 109.45889 * 54.10308 * 15 13 9 38 38 H 1.08997 * 109.49836 * 61.42060 * 16 15 13 39 39 H 1.09004 * 109.49870 * 301.31886 * 16 15 13 40 40 H 1.09005 * 109.58870 * 185.57683 * 17 16 15 41 41 H 1.09002 * 109.59312 * 65.15219 * 17 16 15 42 42 H 1.07996 * 119.50613 * 180.24414 * 23 22 21 43 43 H 1.08007 * 120.30046 * 179.76116 * 24 23 22 44 44 H 1.08000 * 120.76665 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.58382 * 65.92753 * 28 18 17 46 46 H 1.08998 * 109.58346 * 186.35428 * 28 18 17 47 47 H 1.08995 * 109.50047 * 298.57510 * 29 15 13 48 48 H 1.09008 * 109.49609 * 58.63579 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1195 -2.5459 0.2454 11 6 -0.2797 -4.0030 0.7461 12 6 0.7698 -4.7475 -0.1208 13 6 1.9095 -3.7147 -0.2466 14 1 2.6838 -3.9217 0.4920 15 6 2.5064 -3.7674 -1.6545 16 6 3.2394 -5.0968 -1.8480 17 6 3.8646 -5.1317 -3.2460 18 7 2.8146 -4.8714 -4.2403 19 6 2.6132 -5.7229 -5.2654 20 8 1.7037 -5.5280 -6.0475 21 6 3.5035 -6.8919 -5.4421 22 7 4.7973 -6.7833 -5.1625 23 6 5.6207 -7.7983 -5.3012 24 6 5.1685 -9.0270 -5.7582 25 6 3.8284 -9.1859 -6.0674 26 6 2.9781 -8.0986 -5.9063 27 9 1.6631 -8.2077 -6.1962 28 6 1.9923 -3.6620 -4.0992 29 6 1.3845 -3.6464 -2.6884 30 1 -0.4849 0.8401 0.0004 31 1 -0.4533 -1.8434 1.0091 32 1 -0.6799 -2.3965 -0.6775 33 1 -0.0370 -4.0808 1.8060 34 1 -1.2848 -4.3758 0.5488 35 1 0.3587 -4.9895 -1.1008 36 1 1.1193 -5.6477 0.3850 37 1 3.2084 -2.9435 -1.7824 38 1 2.5329 -5.9203 -1.7448 39 1 4.0232 -5.1928 -1.0966 40 1 4.3029 -6.1135 -3.4259 41 1 4.6364 -4.3656 -3.3205 42 1 6.6658 -7.6722 -5.0598 43 1 5.8556 -9.8527 -5.8717 44 1 3.4525 -10.1329 -6.4255 45 1 2.6146 -2.7784 -4.2418 46 1 1.1949 -3.6737 -4.8421 47 1 0.6954 -4.4835 -2.5773 48 1 0.8475 -2.7103 -2.5347 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004586122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:20 Heat of formation + Delta-G solvation = -23.692347 kcal Electronic energy + Delta-G solvation = -31615.799534 eV Core-core repulsion = 27392.465072 eV Total energy + Delta-G solvation = -4223.334462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.12436 -41.88537 -40.62136 -39.71275 -37.79671 -34.81778 -34.07312 -33.41267 -32.40897 -31.70494 -31.20636 -29.16612 -26.70289 -26.26312 -24.89664 -24.73808 -23.99637 -22.68783 -21.88251 -21.14646 -19.85289 -18.88195 -18.68165 -18.49327 -18.13778 -17.43342 -16.91628 -16.88152 -16.47934 -16.25927 -16.08501 -15.73284 -15.37074 -15.19470 -14.96306 -14.72053 -14.44284 -14.32176 -14.21280 -13.97595 -13.87234 -13.55459 -13.43609 -13.23864 -13.03828 -12.83367 -12.75902 -12.60666 -12.21370 -12.05784 -11.84996 -11.72735 -11.52892 -11.48707 -11.32573 -11.22120 -10.94759 -10.93255 -10.61073 -10.47012 -10.16330 -9.72792 -8.73144 -7.78920 -5.13815 -0.53269 -0.02244 1.45405 1.46454 1.48599 1.54458 1.76067 2.51964 2.52987 2.83892 3.06020 3.38482 3.51327 3.61066 3.67416 3.84426 3.89945 3.90698 4.06216 4.16013 4.21750 4.26097 4.29806 4.35689 4.38051 4.55261 4.56323 4.66037 4.76558 4.80379 4.83466 4.87007 4.92315 4.94812 5.02648 5.09325 5.12815 5.18784 5.21632 5.25003 5.48658 5.54383 5.55079 5.62968 5.67459 5.71658 5.83597 6.23533 6.31456 6.55462 6.90250 7.17153 7.87287 8.54666 9.31285 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.002855 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.194271 B = 9803.969475 C =10157.555838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.967 3.033 4 H -0.279 1.279 5 H -0.300 1.300 6 H -0.278 1.278 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.120 4.120 13 C 0.160 3.840 14 H 0.036 0.964 15 C -0.084 4.084 16 C -0.120 4.120 17 C 0.112 3.888 18 N -0.583 5.583 19 C 0.559 3.441 20 O -0.575 6.575 21 C 0.027 3.973 22 N -0.445 5.445 23 C 0.088 3.912 24 C -0.094 4.094 25 C -0.109 4.109 26 C 0.076 3.924 27 F -0.134 7.134 28 C 0.117 3.883 29 C -0.104 4.104 30 H 0.243 0.757 31 H 0.035 0.965 32 H -0.011 1.011 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.211 0.789 43 H 0.201 0.799 44 H 0.184 0.816 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.185 -23.995 -9.030 29.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.797 3.203 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.204 1.204 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.334 5.334 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.157 4.157 13 C 0.054 3.946 14 H 0.054 0.946 15 C -0.105 4.105 16 C -0.159 4.159 17 C -0.009 4.009 18 N -0.314 5.314 19 C 0.347 3.653 20 O -0.454 6.454 21 C -0.109 4.109 22 N -0.157 5.157 23 C -0.072 4.072 24 C -0.114 4.114 25 C -0.135 4.135 26 C 0.053 3.947 27 F -0.113 7.113 28 C -0.005 4.005 29 C -0.142 4.142 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.007 0.993 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.132 0.868 41 H 0.093 0.907 42 H 0.227 0.773 43 H 0.218 0.782 44 H 0.201 0.799 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.888 -22.814 -9.118 28.222 hybrid contribution -0.941 1.118 -0.414 1.519 sum 12.947 -21.696 -9.531 27.003 Atomic orbital electron populations 1.70147 1.06243 1.24906 1.58635 1.25559 0.96362 1.00650 1.03190 0.85310 0.77220 0.79663 0.78127 1.20565 1.22637 1.20371 1.19228 0.90671 0.83545 1.41756 0.90442 1.44734 1.04783 1.01788 1.82082 1.21197 0.84707 0.92763 0.96108 1.22878 0.99151 0.96319 0.99291 1.22696 0.95569 0.97417 1.00042 1.21164 0.94578 0.85220 0.93665 0.94583 1.21435 0.96251 0.97197 0.95627 1.21968 1.00480 0.96747 0.96672 1.22169 0.88446 1.04159 0.86122 1.48054 1.35204 1.22390 1.25706 1.18326 0.83345 0.82462 0.81187 1.90781 1.33853 1.74965 1.45823 1.20887 0.92695 0.92802 1.04539 1.67819 1.00863 1.33980 1.13021 1.23801 1.01145 0.87852 0.94405 1.22879 0.94790 1.00148 0.93535 1.22136 0.93940 0.98338 0.99063 1.19075 0.79427 0.95737 1.00417 1.91547 1.32713 1.96435 1.90571 1.21672 0.94798 0.86132 0.97945 1.21789 0.98140 1.01266 0.93038 0.94750 0.94703 0.99289 0.91818 0.90717 0.91182 0.89351 0.93056 0.91500 0.88748 0.86842 0.90671 0.77287 0.78167 0.79906 0.91264 0.90842 0.91987 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.71 10.47 21.65 0.23 -57.48 16 2 C -0.06 -3.69 5.47 84.86 0.46 -3.22 16 3 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.22 -12.18 9.71 84.03 0.82 -11.37 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.61 -30.28 2.62 -668.23 -1.75 -32.03 16 10 C 0.18 8.84 5.46 86.85 0.47 9.31 16 11 C -0.14 -5.15 7.08 31.98 0.23 -4.93 16 12 C -0.12 -3.95 5.47 31.78 0.17 -3.78 16 13 C 0.16 6.15 2.87 45.34 0.13 6.28 16 14 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 15 C -0.08 -2.91 1.96 -10.77 -0.02 -2.93 16 16 C -0.12 -3.05 5.19 30.67 0.16 -2.89 16 17 C 0.11 2.76 5.86 86.36 0.51 3.27 16 18 N -0.58 -18.02 2.97 -821.30 -2.44 -20.45 16 19 C 0.56 18.51 7.37 86.83 0.64 19.15 16 20 O -0.57 -23.35 15.52 -3.82 -0.06 -23.41 16 21 C 0.03 0.69 5.95 41.91 0.25 0.94 16 22 N -0.45 -8.32 7.39 -184.79 -1.37 -9.69 16 23 C 0.09 0.75 11.18 84.86 0.95 1.70 16 24 C -0.09 -0.41 10.11 22.43 0.23 -0.19 16 25 C -0.11 -1.13 10.16 22.49 0.23 -0.90 16 26 C 0.08 1.66 7.27 22.76 0.17 1.82 16 27 F -0.13 -3.74 16.15 44.97 0.73 -3.01 16 28 C 0.12 4.07 6.47 86.51 0.56 4.63 16 29 C -0.10 -3.88 4.86 30.82 0.15 -3.73 16 30 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.03 1.98 6.73 -2.38 -0.02 1.96 16 32 H -0.01 -0.60 8.11 -2.39 -0.02 -0.62 16 33 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.07 2.32 5.29 -2.39 -0.01 2.31 16 36 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.05 2.00 7.82 -2.39 -0.02 1.98 16 38 H 0.07 1.66 7.56 -2.39 -0.02 1.64 16 39 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.11 2.38 4.86 -2.38 -0.01 2.37 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.21 0.10 8.06 -2.91 -0.02 0.08 16 43 H 0.20 -1.02 8.06 -2.91 -0.02 -1.04 16 44 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 45 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.07 2.76 6.99 -2.39 -0.02 2.74 16 47 H 0.06 2.27 5.83 -2.39 -0.01 2.25 16 48 H 0.05 2.27 7.76 -2.38 -0.02 2.25 16 Total: -1.00 -78.17 376.71 4.44 -73.73 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.98 Total: 10.90 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.10 Total: 13.17 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -5.33 Total: -119.65 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.06 Total: -23.41 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.73 Total: -3.01 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -78.17 4.44 -73.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004586122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.035 kcal (2) G-P(sol) polarization free energy of solvation -78.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds