Wall clock time and date at job start Wed Apr 1 2020 04:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47107 * 239.99791 * 3 2 1 5 5 H 1.48505 * 109.47085 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47220 * 119.99342 * 3 2 1 7 7 C 1.38807 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99737 * 163.80207 * 7 2 1 9 9 N 1.36938 * 120.00459 * 343.80856 * 7 2 1 10 10 C 1.46353 * 120.78085 * 153.83987 * 9 7 2 11 11 C 1.53886 * 108.15649 * 132.70965 * 10 9 7 12 12 H 1.09007 * 112.57403 * 182.36669 * 11 10 9 13 13 C 1.54551 * 107.83063 * 306.64564 * 11 10 9 14 14 C 1.54274 * 104.84641 * 89.07264 * 13 11 10 15 15 C 1.54960 * 104.81180 * 359.81341 * 14 13 11 16 16 H 1.08995 * 112.25465 * 146.60657 * 15 14 13 17 17 C 1.47166 * 120.70797 * 334.12966 * 9 7 2 18 18 N 1.48302 * 107.21073 * 58.50446 * 11 10 9 19 19 C 1.34783 * 128.07743 * 106.70497 * 18 11 10 20 20 O 1.21275 * 119.99848 * 0.02562 * 19 18 11 21 21 C 1.50693 * 119.99744 * 179.97438 * 19 18 11 22 22 H 1.09002 * 109.41715 * 299.91189 * 21 19 18 23 23 C 1.53122 * 109.44249 * 179.97438 * 21 19 18 24 24 C 1.53466 * 109.38351 * 170.20311 * 23 21 19 25 25 C 1.50794 * 108.08662 * 48.87464 * 24 23 21 26 26 N 1.29606 * 128.73459 * 164.11049 * 25 24 23 27 27 N 1.28872 * 109.79693 * 180.10110 * 26 25 24 28 28 C 1.31381 * 109.92534 * 359.96845 * 27 26 25 29 29 O 1.35545 * 126.57788 * 179.97438 * 28 27 26 30 30 N 1.35420 * 106.84719 * 359.95703 * 28 27 26 31 31 C 1.46204 * 129.14970 * 180.21220 * 30 28 27 32 32 H 0.96999 * 120.00346 * 0.02562 * 1 2 3 33 33 H 1.08996 * 109.56546 * 13.10020 * 10 9 7 34 34 H 1.09003 * 109.80218 * 252.44810 * 10 9 7 35 35 H 1.09000 * 110.36322 * 207.91959 * 13 11 10 36 36 H 1.09004 * 110.36138 * 330.12067 * 13 11 10 37 37 H 1.08997 * 110.36277 * 118.84733 * 14 13 11 38 38 H 1.08998 * 110.36324 * 241.04544 * 14 13 11 39 39 H 1.09000 * 109.74533 * 107.60869 * 17 9 7 40 40 H 1.09007 * 109.78640 * 346.90977 * 17 9 7 41 41 H 1.09006 * 109.48788 * 290.17697 * 23 21 19 42 42 H 1.09000 * 109.48427 * 50.22694 * 23 21 19 43 43 H 1.09003 * 109.74332 * 168.52624 * 24 23 21 44 44 H 1.09002 * 109.74101 * 289.22894 * 24 23 21 45 45 H 0.96698 * 113.99873 * 270.03104 * 29 28 27 46 46 H 1.09005 * 109.60402 * 43.10551 * 31 30 28 47 47 H 1.08998 * 109.60536 * 282.62465 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0581 -1.2207 -0.2604 9 7 1.3664 -2.3644 0.3317 10 6 1.8384 -3.6531 -0.1766 11 6 1.8947 -4.6417 1.0014 12 1 2.2785 -5.6192 0.7093 13 6 2.7391 -3.9944 2.1224 14 6 1.7264 -3.1959 2.9691 15 6 0.3597 -3.4304 2.2775 16 1 -0.4648 -3.4545 2.9900 17 6 0.1799 -2.3445 1.2022 18 7 0.5280 -4.7237 1.5712 19 6 -0.3569 -5.7350 1.4667 20 8 -0.0654 -6.7337 0.8437 21 6 -1.7079 -5.6249 2.1251 22 1 -1.5781 -5.4994 3.2000 23 6 -2.5124 -6.8993 1.8538 24 6 -3.7802 -6.8951 2.7186 25 6 -4.4521 -5.5547 2.5578 26 7 -5.6629 -5.2122 2.8682 27 7 -5.8554 -3.9728 2.5721 28 6 -4.7620 -3.4614 2.0534 29 8 -4.5912 -2.1872 1.6238 30 7 -3.8382 -4.4513 2.0305 31 6 -2.4556 -4.4129 1.5568 32 1 -0.4850 0.8400 -0.0004 33 1 2.8333 -3.5341 -0.6055 34 1 1.1509 -4.0245 -0.9365 35 1 3.2177 -4.7634 2.7288 36 1 3.4886 -3.3277 1.6959 37 1 1.7071 -3.5721 3.9919 38 1 1.9778 -2.1353 2.9606 39 1 -0.7128 -2.5539 0.6127 40 1 0.0869 -1.3677 1.6769 41 1 -2.7908 -6.9362 0.8005 42 1 -1.9066 -7.7711 2.1007 43 1 -4.4534 -7.6864 2.3889 44 1 -3.5132 -7.0500 3.7640 45 1 -4.8147 -2.0528 0.6926 46 1 -1.9773 -3.4950 1.8986 47 1 -2.4410 -4.4518 0.4676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017675912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:22 Heat of formation + Delta-G solvation = 50.294698 kcal Electronic energy + Delta-G solvation = -32876.956289 eV Core-core repulsion = 28676.750107 eV Total energy + Delta-G solvation = -4200.206182 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.29084 -40.60674 -38.55250 -37.67899 -36.71268 -34.32355 -33.41530 -32.19968 -31.10184 -30.78100 -30.34501 -28.71775 -26.58892 -25.14852 -23.93484 -23.73231 -22.86958 -22.34364 -21.10887 -20.44827 -19.77799 -18.96161 -18.24903 -17.68885 -16.87459 -16.61179 -16.19997 -15.56748 -15.27285 -15.12933 -14.72274 -14.61764 -14.47885 -14.43091 -13.94789 -13.51914 -13.38394 -13.09661 -12.88717 -12.55481 -12.42263 -12.26231 -12.13421 -11.99299 -11.78596 -11.71584 -11.42515 -11.32467 -11.17582 -10.95792 -10.72720 -10.64419 -10.48419 -10.30240 -10.24980 -10.15961 -9.98415 -9.87417 -9.69107 -9.06935 -8.72092 -8.46739 -6.90406 -5.99225 -3.41363 1.53139 2.01370 2.62432 2.67603 3.04401 3.26289 3.33251 3.34014 3.67767 4.03221 4.15784 4.28674 4.32230 4.33669 4.76298 4.80228 4.89333 5.01846 5.05365 5.15104 5.18526 5.21145 5.26439 5.35357 5.42143 5.49309 5.56624 5.62720 5.70902 5.73263 5.83976 5.87278 5.93281 5.93694 6.09861 6.17924 6.26027 6.39286 6.42605 6.55584 6.64544 6.77759 6.93407 7.21992 7.30213 7.59149 7.82732 8.18883 8.24141 8.57575 8.97916 9.60800 10.15819 11.09596 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.004315 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.777389 B = 6487.578228 C = 8311.638552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.584 5.584 10 C 0.139 3.861 11 C 0.115 3.885 12 H 0.091 0.909 13 C -0.112 4.112 14 C -0.111 4.111 15 C 0.088 3.912 16 H 0.082 0.918 17 C 0.171 3.829 18 N -0.603 5.603 19 C 0.539 3.461 20 O -0.546 6.546 21 C -0.117 4.117 22 H 0.106 0.894 23 C -0.106 4.106 24 C -0.031 4.031 25 C 0.185 3.815 26 N -0.278 5.278 27 N -0.293 5.293 28 C 0.360 3.640 29 O -0.431 6.431 30 N -0.478 5.478 31 C 0.109 3.891 32 H 0.257 0.743 33 H 0.065 0.935 34 H 0.019 0.981 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.024 0.976 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.409 0.591 46 H 0.116 0.884 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 -10.430 5.280 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.307 5.307 10 C 0.012 3.988 11 C 0.011 3.989 12 H 0.109 0.891 13 C -0.150 4.150 14 C -0.150 4.150 15 C -0.016 4.016 16 H 0.100 0.900 17 C 0.044 3.956 18 N -0.335 5.335 19 C 0.326 3.674 20 O -0.425 6.425 21 C -0.138 4.138 22 H 0.124 0.876 23 C -0.144 4.144 24 C -0.071 4.071 25 C -0.082 4.082 26 N -0.120 5.120 27 N -0.145 5.145 28 C 0.055 3.945 29 O -0.230 6.230 30 N -0.181 5.181 31 C -0.014 4.014 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.041 0.959 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.267 0.733 46 H 0.134 0.866 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.340 -10.641 5.912 12.623 hybrid contribution 1.597 1.381 -1.093 2.377 sum -1.743 -9.260 4.819 10.583 Atomic orbital electron populations 1.69962 1.05234 1.25964 1.53756 1.25002 0.95326 0.98403 1.00510 0.86353 0.78923 0.83191 0.78209 1.20870 1.21577 1.20907 1.19127 0.92468 0.84264 1.42647 0.91292 1.43823 1.31967 1.01318 1.53542 1.21302 0.98578 0.86619 0.92306 1.22968 0.80983 0.99318 0.95637 0.89055 1.22310 0.97878 0.98587 0.96225 1.22367 0.93744 1.02067 0.96784 1.23625 0.97982 0.84176 0.95810 0.89978 1.21351 0.89095 0.95959 0.89195 1.49293 1.15808 1.16459 1.51949 1.19511 0.84781 0.82186 0.80905 1.90688 1.78443 1.30317 1.43020 1.21601 0.93652 0.96161 1.02419 0.87562 1.21560 0.94708 0.97045 1.01112 1.20300 0.95725 0.88825 1.02202 1.24632 0.91217 0.91178 1.01203 1.73978 1.13188 1.05018 1.19792 1.74845 1.18802 1.02621 1.18184 1.21907 0.86117 0.83948 1.02532 1.84956 1.88216 1.16516 1.33338 1.46677 1.13348 1.10308 1.47739 1.22277 0.77420 1.00705 1.01010 0.93335 0.91691 0.96295 0.92788 0.89775 0.92903 0.89356 0.95853 0.88611 0.90277 0.88391 0.87471 0.88400 0.73289 0.86577 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.54 11.12 55.49 0.62 -22.92 16 2 C 0.01 0.16 4.95 -17.43 -0.09 0.08 16 3 Si 0.90 19.95 29.58 -169.99 -5.03 14.92 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.26 -6.16 9.63 -15.06 -0.15 -6.30 16 8 H 0.07 1.64 7.87 -52.48 -0.41 1.23 16 9 N -0.58 -12.46 2.26 -171.73 -0.39 -12.85 16 10 C 0.14 2.61 5.98 -3.66 -0.02 2.59 16 11 C 0.11 1.83 4.12 -65.66 -0.27 1.56 16 12 H 0.09 1.42 7.93 -51.93 -0.41 1.00 16 13 C -0.11 -1.62 6.18 -25.25 -0.16 -1.78 16 14 C -0.11 -1.64 6.21 -25.03 -0.16 -1.80 16 15 C 0.09 1.36 2.98 -65.44 -0.20 1.17 16 16 H 0.08 1.11 6.31 -51.93 -0.33 0.78 16 17 C 0.17 3.37 4.16 -3.22 -0.01 3.36 16 18 N -0.60 -9.27 2.73 -152.80 -0.42 -9.68 16 19 C 0.54 8.00 7.26 -10.99 -0.08 7.92 16 20 O -0.55 -9.55 16.13 5.56 0.09 -9.46 16 21 C -0.12 -1.35 1.89 -91.54 -0.17 -1.52 16 22 H 0.11 1.10 8.02 -51.93 -0.42 0.69 16 23 C -0.11 -1.05 4.68 -26.43 -0.12 -1.17 16 24 C -0.03 -0.28 6.34 -27.60 -0.17 -0.45 16 25 C 0.18 2.39 7.78 -154.44 -1.20 1.18 16 26 N -0.28 -4.33 12.17 32.93 0.40 -3.93 16 27 N -0.29 -4.86 12.24 29.53 0.36 -4.50 16 28 C 0.36 5.33 9.30 -89.29 -0.83 4.50 16 29 O -0.43 -5.74 13.64 -18.33 -0.25 -5.99 16 30 N -0.48 -6.36 3.16 -115.38 -0.36 -6.73 16 31 C 0.11 1.37 5.62 -4.03 -0.02 1.35 16 32 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.30 7.84 -51.93 -0.41 0.89 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.47 7.85 -51.93 -0.41 1.07 16 39 H 0.02 0.50 6.98 -51.93 -0.36 0.14 16 40 H 0.10 2.16 6.28 -51.93 -0.33 1.83 16 41 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 42 H 0.10 0.93 7.77 -51.93 -0.40 0.53 16 43 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.41 3.52 9.06 45.56 0.41 3.93 16 46 H 0.12 1.60 4.41 -51.93 -0.23 1.37 16 47 H 0.10 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -30.95 364.97 -8.93 -39.88 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.80 Total: 5.10 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: -3.65 Total: 10.67 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.21 Total: -60.62 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.16 Total: -15.45 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.95 -8.93 -39.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017675912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.174 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds