Wall clock time and date at job start Wed Apr 1 2020 04:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99883 * 2 1 4 4 H 1.48496 * 109.47346 * 270.00200 * 3 2 1 5 5 H 1.48494 * 109.47201 * 30.00476 * 3 2 1 6 6 H 1.48508 * 109.46864 * 150.00140 * 3 2 1 7 7 C 1.38807 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00062 * 197.30926 * 7 2 1 9 9 N 1.36934 * 120.00178 * 17.31119 * 7 2 1 10 10 C 1.46977 * 120.77562 * 207.51655 * 9 7 2 11 11 C 1.53101 * 108.62166 * 234.29551 * 10 9 7 12 12 C 1.51507 * 109.15216 * 304.68184 * 11 10 9 13 13 H 1.09007 * 110.22220 * 299.21736 * 12 11 10 14 14 C 1.53141 * 110.48190 * 61.07800 * 12 11 10 15 15 H 1.09001 * 109.25185 * 180.42297 * 14 12 11 16 16 C 1.52850 * 109.36509 * 60.88817 * 14 12 11 17 17 C 1.53126 * 109.36723 * 62.01007 * 16 14 12 18 18 C 1.53151 * 109.47375 * 299.38166 * 17 16 14 19 19 N 1.46946 * 109.03909 * 54.04151 * 18 17 16 20 20 C 1.34773 * 120.84439 * 125.97250 * 19 18 17 21 21 O 1.21278 * 120.00137 * 180.02562 * 20 19 18 22 22 C 1.50699 * 120.00178 * 0.02562 * 20 19 18 23 23 C 1.50691 * 109.47347 * 180.02562 * 22 20 19 24 24 C 1.38238 * 119.58951 * 124.72893 * 23 22 20 25 25 C 1.38597 * 119.18821 * 179.77427 * 24 23 22 26 26 C 1.38874 * 118.39794 * 0.48963 * 25 24 23 27 27 F 1.35097 * 120.44111 * 179.73357 * 26 25 24 28 28 C 1.38424 * 119.11593 * 359.74906 * 26 25 24 29 29 N 1.31847 * 119.59130 * 304.99960 * 23 22 20 30 30 C 1.46897 * 120.77584 * 27.49670 * 9 7 2 31 31 H 0.97001 * 119.99869 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.61799 * 354.03613 * 10 9 7 33 33 H 1.09005 * 109.61394 * 114.55879 * 10 9 7 34 34 H 1.09001 * 109.44981 * 64.68523 * 11 10 9 35 35 H 1.08995 * 109.45471 * 184.64463 * 11 10 9 36 36 H 1.09003 * 109.49385 * 181.97653 * 16 14 12 37 37 H 1.08999 * 109.49708 * 302.03530 * 16 14 12 38 38 H 1.08992 * 109.47305 * 59.35588 * 17 16 14 39 39 H 1.08994 * 109.47297 * 179.35910 * 17 16 14 40 40 H 1.09005 * 109.51893 * 294.18136 * 18 17 16 41 41 H 1.08997 * 109.62546 * 173.96240 * 18 17 16 42 42 H 1.09005 * 109.46845 * 300.00430 * 22 20 19 43 43 H 1.09000 * 109.47260 * 59.99615 * 22 20 19 44 44 H 1.07998 * 120.40385 * 359.97438 * 24 23 22 45 45 H 1.07998 * 120.79697 * 180.25581 * 25 24 23 46 46 H 1.07999 * 119.63561 * 179.97438 * 28 26 25 47 47 H 1.09000 * 109.51510 * 6.75796 * 30 9 7 48 48 H 1.08999 * 109.51519 * 246.59182 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0536 -1.2235 0.2777 9 7 1.3721 -2.3610 -0.3539 10 6 1.8192 -3.6572 0.1753 11 6 2.0852 -4.6001 -1.0012 12 6 0.8408 -4.6854 -1.8611 13 1 0.0075 -5.0806 -1.2799 14 6 0.4822 -3.3067 -2.4230 15 1 -0.4185 -3.3896 -3.0312 16 6 1.6324 -2.7990 -3.2924 17 6 1.8345 -3.7516 -4.4741 18 6 2.1834 -5.1478 -3.9505 19 7 1.1514 -5.5731 -2.9948 20 6 0.5053 -6.7454 -3.1518 21 8 -0.3442 -7.0812 -2.3540 22 6 0.8383 -7.6391 -4.3186 23 6 -0.0189 -8.8772 -4.2638 24 6 -0.7981 -9.2167 -5.3540 25 6 -1.5797 -10.3598 -5.2964 26 6 -1.5562 -11.1181 -4.1332 27 9 -2.3061 -12.2371 -4.0303 28 6 -0.7544 -10.7119 -3.0805 29 7 -0.0205 -9.6203 -3.1747 30 6 0.2244 -2.3377 -1.2705 31 1 -0.4850 0.8401 0.0004 32 1 2.7355 -3.5215 0.7498 33 1 1.0431 -4.0791 0.8140 34 1 2.9148 -4.2153 -1.5943 35 1 2.3382 -5.5905 -0.6227 36 1 1.3943 -1.8027 -3.6651 37 1 2.5457 -2.7568 -2.6990 38 1 0.9172 -3.8027 -5.0606 39 1 2.6469 -3.3850 -5.1015 40 1 3.1523 -5.1182 -3.4519 41 1 2.2225 -5.8514 -4.7821 42 1 0.6476 -7.1064 -5.2503 43 1 1.8898 -7.9223 -4.2709 44 1 -0.7953 -8.6006 -6.2410 45 1 -2.1951 -10.6517 -6.1345 46 1 -0.7300 -11.2951 -2.1718 47 1 0.0935 -1.3298 -1.6644 48 1 -0.6755 -2.6399 -0.7349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021612679.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:25 Heat of formation + Delta-G solvation = -38.047791 kcal Electronic energy + Delta-G solvation = -31174.936840 eV Core-core repulsion = 26950.979879 eV Total energy + Delta-G solvation = -4223.956961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.99969 -41.79739 -40.99949 -39.29397 -37.02948 -34.52158 -33.96531 -33.58684 -33.44582 -31.85421 -31.13192 -29.03957 -27.23880 -26.19785 -24.96432 -24.25938 -23.50772 -23.27595 -22.72116 -20.41294 -19.38478 -18.63986 -18.50647 -18.42103 -17.91853 -17.28021 -16.94041 -16.80166 -16.51588 -16.25925 -15.96008 -15.46609 -15.22297 -15.02612 -14.94419 -14.85122 -14.69825 -14.24711 -14.10030 -13.98231 -13.80320 -13.73593 -13.53913 -13.24943 -13.01653 -12.92988 -12.84114 -12.60423 -12.45597 -12.15408 -11.96870 -11.81504 -11.71581 -11.40962 -11.29494 -11.04447 -10.90475 -10.71652 -10.51843 -10.48220 -9.82824 -9.45667 -8.69040 -7.85787 -5.31190 -0.12817 0.16130 1.48590 1.49151 1.58376 1.76515 2.02876 2.52385 2.64970 2.98923 3.28546 3.29779 3.56584 3.64105 3.69052 3.79867 3.89263 3.96418 4.01685 4.06927 4.18463 4.28889 4.33056 4.40514 4.48298 4.53081 4.62626 4.65694 4.69574 4.75562 4.79586 4.89370 4.92898 4.98210 5.00340 5.03332 5.07988 5.17045 5.20517 5.27270 5.33464 5.48820 5.61252 5.62206 5.68650 5.69797 5.74066 6.39157 6.60456 6.90903 7.14801 7.31903 7.84862 8.39156 9.21193 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.025581 B = 0.002357 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.317348 B =11877.938563 C =12244.862710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.282 1.282 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.253 4.253 8 H 0.071 0.929 9 N -0.601 5.601 10 C 0.141 3.859 11 C -0.123 4.123 12 C 0.166 3.834 13 H 0.055 0.945 14 C -0.102 4.102 15 H 0.055 0.945 16 C -0.099 4.099 17 C -0.125 4.125 18 C 0.102 3.898 19 N -0.606 5.606 20 C 0.511 3.489 21 O -0.583 6.583 22 C -0.082 4.082 23 C 0.114 3.886 24 C -0.127 4.127 25 C -0.106 4.106 26 C 0.030 3.970 27 F -0.137 7.137 28 C 0.061 3.939 29 N -0.467 5.467 30 C 0.186 3.814 31 H 0.249 0.751 32 H 0.062 0.938 33 H 0.001 0.999 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.154 0.846 43 H 0.138 0.862 44 H 0.186 0.814 45 H 0.177 0.823 46 H 0.169 0.831 47 H 0.061 0.939 48 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 -18.962 -18.872 27.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.209 1.209 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.383 4.383 8 H 0.088 0.912 9 N -0.324 5.324 10 C 0.015 3.985 11 C -0.162 4.162 12 C 0.062 3.938 13 H 0.073 0.927 14 C -0.123 4.123 15 H 0.073 0.927 16 C -0.136 4.136 17 C -0.163 4.163 18 C -0.019 4.019 19 N -0.339 5.339 20 C 0.300 3.700 21 O -0.463 6.463 22 C -0.122 4.122 23 C -0.025 4.025 24 C -0.146 4.146 25 C -0.133 4.133 26 C 0.009 3.991 27 F -0.116 7.116 28 C -0.098 4.098 29 N -0.175 5.175 30 C 0.060 3.940 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.019 0.981 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.171 0.829 43 H 0.155 0.845 44 H 0.204 0.796 45 H 0.195 0.805 46 H 0.186 0.814 47 H 0.080 0.920 48 H -0.004 1.004 Dipole moment (debyes) X Y Z Total from point charges 4.098 -18.810 -17.730 26.172 hybrid contribution -1.064 0.691 0.464 1.350 sum 3.034 -18.120 -17.266 25.212 Atomic orbital electron populations 1.70214 1.06839 1.25753 1.55735 1.25792 0.95912 1.01525 1.01420 0.85272 0.78043 0.79518 0.77667 1.20866 1.22717 1.19234 1.19491 0.92918 0.85624 1.40266 0.91174 1.44238 1.35380 1.01965 1.50784 1.21004 0.97246 0.86166 0.94065 1.21899 0.97890 0.98919 0.97526 1.20575 0.97142 0.88942 0.87102 0.92672 1.21767 0.98659 0.94552 0.97327 0.92685 1.21346 0.97820 0.98180 0.96291 1.21923 1.03187 0.94281 0.96900 1.22058 0.90334 0.96944 0.92555 1.48549 1.39459 1.18786 1.27071 1.21028 0.80532 0.81371 0.87068 1.90714 1.34900 1.73699 1.46943 1.20791 1.02130 0.90642 0.98611 1.21147 0.96384 0.95452 0.89496 1.22280 0.94727 0.96988 1.00633 1.22002 0.99510 0.94334 0.97422 1.18997 0.95844 0.86513 0.97761 1.91502 1.74229 1.49261 1.96591 1.23040 0.93681 0.94197 0.98845 1.67474 1.20292 1.03917 1.25811 1.20458 0.87254 0.97673 0.88641 0.94236 0.91989 0.98126 0.90147 0.91823 0.93736 0.92045 0.91280 0.88206 0.90567 0.85628 0.82858 0.84456 0.79637 0.80539 0.81379 0.92032 1.00358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.12 11.18 21.65 0.24 -55.87 16 2 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 3 Si 0.97 44.39 29.59 68.60 2.03 46.42 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.25 -13.66 9.60 84.03 0.81 -12.85 16 8 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 9 N -0.60 -30.07 2.63 -700.03 -1.84 -31.91 16 10 C 0.14 6.07 6.50 86.32 0.56 6.63 16 11 C -0.12 -4.23 4.93 30.14 0.15 -4.08 16 12 C 0.17 5.86 2.55 44.39 0.11 5.98 16 13 H 0.05 2.38 7.10 -2.38 -0.02 2.36 16 14 C -0.10 -3.84 2.50 -10.87 -0.03 -3.87 16 15 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 16 C -0.10 -3.08 4.86 30.59 0.15 -2.94 16 17 C -0.12 -2.40 6.08 30.69 0.19 -2.21 16 18 C 0.10 1.70 5.84 86.34 0.50 2.20 16 19 N -0.61 -15.79 2.62 -796.95 -2.09 -17.88 16 20 C 0.51 13.85 7.64 87.66 0.67 14.52 16 21 O -0.58 -22.43 14.80 -3.02 -0.04 -22.47 16 22 C -0.08 -1.23 4.45 29.10 0.13 -1.10 16 23 C 0.11 2.21 5.76 42.55 0.25 2.46 16 24 C -0.13 -1.63 9.71 22.36 0.22 -1.42 16 25 C -0.11 -1.47 10.16 22.51 0.23 -1.24 16 26 C 0.03 0.58 7.34 22.47 0.17 0.75 16 27 F -0.14 -2.70 17.28 44.97 0.78 -1.92 16 28 C 0.06 1.38 11.17 84.73 0.95 2.32 16 29 N -0.47 -12.05 9.22 -183.71 -1.69 -13.75 16 30 C 0.19 9.19 4.69 86.23 0.40 9.59 16 31 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.06 2.54 7.94 -2.39 -0.02 2.52 16 33 H 0.00 0.03 8.14 -2.38 -0.02 0.02 16 34 H 0.08 2.56 5.26 -2.39 -0.01 2.55 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 2.11 6.17 -2.39 -0.01 2.10 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.24 7.18 -2.38 -0.02 1.23 16 41 H 0.13 0.92 5.96 -2.39 -0.01 0.91 16 42 H 0.15 0.92 7.44 -2.38 -0.02 0.90 16 43 H 0.14 1.41 7.94 -2.39 -0.02 1.39 16 44 H 0.19 0.77 7.95 -2.91 -0.02 0.75 16 45 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 46 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16 47 H 0.06 3.39 6.03 -2.39 -0.01 3.38 16 48 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 Total: -1.00 -78.61 375.64 4.23 -74.39 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.98 Total: 10.69 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 5.87 Total: 12.31 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -5.38 Total: -119.41 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.04 Total: -22.47 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -78.61 4.23 -74.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021612679.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.339 kcal (2) G-P(sol) polarization free energy of solvation -78.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds