Wall clock time and date at job start Wed Apr 1 2020 04:53:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86798 * 119.99883 * 2 1
4 4 H 1.48496 * 109.47346 * 270.00200 * 3 2 1
5 5 H 1.48494 * 109.47201 * 30.00476 * 3 2 1
6 6 H 1.48508 * 109.46864 * 150.00140 * 3 2 1
7 7 C 1.38807 * 119.99846 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00062 * 197.30926 * 7 2 1
9 9 N 1.36934 * 120.00178 * 17.31119 * 7 2 1
10 10 C 1.46977 * 120.77562 * 207.51655 * 9 7 2
11 11 C 1.53101 * 108.62166 * 234.29551 * 10 9 7
12 12 C 1.51507 * 109.15216 * 304.68184 * 11 10 9
13 13 H 1.09007 * 110.22220 * 299.21736 * 12 11 10
14 14 C 1.53141 * 110.48190 * 61.07800 * 12 11 10
15 15 H 1.09001 * 109.25185 * 180.42297 * 14 12 11
16 16 C 1.52850 * 109.36509 * 60.88817 * 14 12 11
17 17 C 1.53126 * 109.36723 * 62.01007 * 16 14 12
18 18 C 1.53151 * 109.47375 * 299.38166 * 17 16 14
19 19 N 1.46946 * 109.03909 * 54.04151 * 18 17 16
20 20 C 1.34773 * 120.84439 * 125.97250 * 19 18 17
21 21 O 1.21278 * 120.00137 * 180.02562 * 20 19 18
22 22 C 1.50699 * 120.00178 * 0.02562 * 20 19 18
23 23 C 1.50691 * 109.47347 * 180.02562 * 22 20 19
24 24 C 1.38238 * 119.58951 * 124.72893 * 23 22 20
25 25 C 1.38597 * 119.18821 * 179.77427 * 24 23 22
26 26 C 1.38874 * 118.39794 * 0.48963 * 25 24 23
27 27 F 1.35097 * 120.44111 * 179.73357 * 26 25 24
28 28 C 1.38424 * 119.11593 * 359.74906 * 26 25 24
29 29 N 1.31847 * 119.59130 * 304.99960 * 23 22 20
30 30 C 1.46897 * 120.77584 * 27.49670 * 9 7 2
31 31 H 0.97001 * 119.99869 * 359.97438 * 1 2 3
32 32 H 1.08996 * 109.61799 * 354.03613 * 10 9 7
33 33 H 1.09005 * 109.61394 * 114.55879 * 10 9 7
34 34 H 1.09001 * 109.44981 * 64.68523 * 11 10 9
35 35 H 1.08995 * 109.45471 * 184.64463 * 11 10 9
36 36 H 1.09003 * 109.49385 * 181.97653 * 16 14 12
37 37 H 1.08999 * 109.49708 * 302.03530 * 16 14 12
38 38 H 1.08992 * 109.47305 * 59.35588 * 17 16 14
39 39 H 1.08994 * 109.47297 * 179.35910 * 17 16 14
40 40 H 1.09005 * 109.51893 * 294.18136 * 18 17 16
41 41 H 1.08997 * 109.62546 * 173.96240 * 18 17 16
42 42 H 1.09005 * 109.46845 * 300.00430 * 22 20 19
43 43 H 1.09000 * 109.47260 * 59.99615 * 22 20 19
44 44 H 1.07998 * 120.40385 * 359.97438 * 24 23 22
45 45 H 1.07998 * 120.79697 * 180.25581 * 25 24 23
46 46 H 1.07999 * 119.63561 * 179.97438 * 28 26 25
47 47 H 1.09000 * 109.51510 * 6.75796 * 30 9 7
48 48 H 1.08999 * 109.51519 * 246.59182 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0465 -1.4000
5 1 1.4477 2.6526 0.7001
6 1 3.5478 1.4401 0.7001
7 6 2.0102 -1.2021 -0.0005
8 1 3.0536 -1.2235 0.2777
9 7 1.3721 -2.3610 -0.3539
10 6 1.8192 -3.6572 0.1753
11 6 2.0852 -4.6001 -1.0012
12 6 0.8408 -4.6854 -1.8611
13 1 0.0075 -5.0806 -1.2799
14 6 0.4822 -3.3067 -2.4230
15 1 -0.4185 -3.3896 -3.0312
16 6 1.6324 -2.7990 -3.2924
17 6 1.8345 -3.7516 -4.4741
18 6 2.1834 -5.1478 -3.9505
19 7 1.1514 -5.5731 -2.9948
20 6 0.5053 -6.7454 -3.1518
21 8 -0.3442 -7.0812 -2.3540
22 6 0.8383 -7.6391 -4.3186
23 6 -0.0189 -8.8772 -4.2638
24 6 -0.7981 -9.2167 -5.3540
25 6 -1.5797 -10.3598 -5.2964
26 6 -1.5562 -11.1181 -4.1332
27 9 -2.3061 -12.2371 -4.0303
28 6 -0.7544 -10.7119 -3.0805
29 7 -0.0205 -9.6203 -3.1747
30 6 0.2244 -2.3377 -1.2705
31 1 -0.4850 0.8401 0.0004
32 1 2.7355 -3.5215 0.7498
33 1 1.0431 -4.0791 0.8140
34 1 2.9148 -4.2153 -1.5943
35 1 2.3382 -5.5905 -0.6227
36 1 1.3943 -1.8027 -3.6651
37 1 2.5457 -2.7568 -2.6990
38 1 0.9172 -3.8027 -5.0606
39 1 2.6469 -3.3850 -5.1015
40 1 3.1523 -5.1182 -3.4519
41 1 2.2225 -5.8514 -4.7821
42 1 0.6476 -7.1064 -5.2503
43 1 1.8898 -7.9223 -4.2709
44 1 -0.7953 -8.6006 -6.2410
45 1 -2.1951 -10.6517 -6.1345
46 1 -0.7300 -11.2951 -2.1718
47 1 0.0935 -1.3298 -1.6644
48 1 -0.6755 -2.6399 -0.7349
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001021612679.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:53:25
Heat of formation + Delta-G solvation = -38.047791 kcal
Electronic energy + Delta-G solvation = -31174.936840 eV
Core-core repulsion = 26950.979879 eV
Total energy + Delta-G solvation = -4223.956961 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.175 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-49.99969 -41.79739 -40.99949 -39.29397 -37.02948 -34.52158 -33.96531 -33.58684
-33.44582 -31.85421 -31.13192 -29.03957 -27.23880 -26.19785 -24.96432 -24.25938
-23.50772 -23.27595 -22.72116 -20.41294 -19.38478 -18.63986 -18.50647 -18.42103
-17.91853 -17.28021 -16.94041 -16.80166 -16.51588 -16.25925 -15.96008 -15.46609
-15.22297 -15.02612 -14.94419 -14.85122 -14.69825 -14.24711 -14.10030 -13.98231
-13.80320 -13.73593 -13.53913 -13.24943 -13.01653 -12.92988 -12.84114 -12.60423
-12.45597 -12.15408 -11.96870 -11.81504 -11.71581 -11.40962 -11.29494 -11.04447
-10.90475 -10.71652 -10.51843 -10.48220 -9.82824 -9.45667 -8.69040 -7.85787
-5.31190 -0.12817 0.16130 1.48590 1.49151 1.58376 1.76515 2.02876
2.52385 2.64970 2.98923 3.28546 3.29779 3.56584 3.64105 3.69052
3.79867 3.89263 3.96418 4.01685 4.06927 4.18463 4.28889 4.33056
4.40514 4.48298 4.53081 4.62626 4.65694 4.69574 4.75562 4.79586
4.89370 4.92898 4.98210 5.00340 5.03332 5.07988 5.17045 5.20517
5.27270 5.33464 5.48820 5.61252 5.62206 5.68650 5.69797 5.74066
6.39157 6.60456 6.90903 7.14801 7.31903 7.84862 8.39156 9.21193
Molecular weight = 347.18amu
Principal moments of inertia in cm(-1)
A = 0.025581 B = 0.002357 C = 0.002286
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1094.317348 B =11877.938563 C =12244.862710
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.939 5.939
2 C -0.051 4.051
3 Si 0.967 3.033
4 H -0.282 1.282
5 H -0.300 1.300
6 H -0.268 1.268
7 C -0.253 4.253
8 H 0.071 0.929
9 N -0.601 5.601
10 C 0.141 3.859
11 C -0.123 4.123
12 C 0.166 3.834
13 H 0.055 0.945
14 C -0.102 4.102
15 H 0.055 0.945
16 C -0.099 4.099
17 C -0.125 4.125
18 C 0.102 3.898
19 N -0.606 5.606
20 C 0.511 3.489
21 O -0.583 6.583
22 C -0.082 4.082
23 C 0.114 3.886
24 C -0.127 4.127
25 C -0.106 4.106
26 C 0.030 3.970
27 F -0.137 7.137
28 C 0.061 3.939
29 N -0.467 5.467
30 C 0.186 3.814
31 H 0.249 0.751
32 H 0.062 0.938
33 H 0.001 0.999
34 H 0.080 0.920
35 H 0.063 0.937
36 H 0.044 0.956
37 H 0.061 0.939
38 H 0.068 0.932
39 H 0.100 0.900
40 H 0.076 0.924
41 H 0.126 0.874
42 H 0.154 0.846
43 H 0.138 0.862
44 H 0.186 0.814
45 H 0.177 0.823
46 H 0.169 0.831
47 H 0.061 0.939
48 H -0.022 1.022
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.117 -18.962 -18.872 27.067
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.585 5.585
2 C -0.246 4.246
3 Si 0.795 3.205
4 H -0.209 1.209
5 H -0.227 1.227
6 H -0.192 1.192
7 C -0.383 4.383
8 H 0.088 0.912
9 N -0.324 5.324
10 C 0.015 3.985
11 C -0.162 4.162
12 C 0.062 3.938
13 H 0.073 0.927
14 C -0.123 4.123
15 H 0.073 0.927
16 C -0.136 4.136
17 C -0.163 4.163
18 C -0.019 4.019
19 N -0.339 5.339
20 C 0.300 3.700
21 O -0.463 6.463
22 C -0.122 4.122
23 C -0.025 4.025
24 C -0.146 4.146
25 C -0.133 4.133
26 C 0.009 3.991
27 F -0.116 7.116
28 C -0.098 4.098
29 N -0.175 5.175
30 C 0.060 3.940
31 H 0.058 0.942
32 H 0.080 0.920
33 H 0.019 0.981
34 H 0.099 0.901
35 H 0.082 0.918
36 H 0.063 0.937
37 H 0.080 0.920
38 H 0.087 0.913
39 H 0.118 0.882
40 H 0.094 0.906
41 H 0.144 0.856
42 H 0.171 0.829
43 H 0.155 0.845
44 H 0.204 0.796
45 H 0.195 0.805
46 H 0.186 0.814
47 H 0.080 0.920
48 H -0.004 1.004
Dipole moment (debyes) X Y Z Total
from point charges 4.098 -18.810 -17.730 26.172
hybrid contribution -1.064 0.691 0.464 1.350
sum 3.034 -18.120 -17.266 25.212
Atomic orbital electron populations
1.70214 1.06839 1.25753 1.55735 1.25792 0.95912 1.01525 1.01420
0.85272 0.78043 0.79518 0.77667 1.20866 1.22717 1.19234 1.19491
0.92918 0.85624 1.40266 0.91174 1.44238 1.35380 1.01965 1.50784
1.21004 0.97246 0.86166 0.94065 1.21899 0.97890 0.98919 0.97526
1.20575 0.97142 0.88942 0.87102 0.92672 1.21767 0.98659 0.94552
0.97327 0.92685 1.21346 0.97820 0.98180 0.96291 1.21923 1.03187
0.94281 0.96900 1.22058 0.90334 0.96944 0.92555 1.48549 1.39459
1.18786 1.27071 1.21028 0.80532 0.81371 0.87068 1.90714 1.34900
1.73699 1.46943 1.20791 1.02130 0.90642 0.98611 1.21147 0.96384
0.95452 0.89496 1.22280 0.94727 0.96988 1.00633 1.22002 0.99510
0.94334 0.97422 1.18997 0.95844 0.86513 0.97761 1.91502 1.74229
1.49261 1.96591 1.23040 0.93681 0.94197 0.98845 1.67474 1.20292
1.03917 1.25811 1.20458 0.87254 0.97673 0.88641 0.94236 0.91989
0.98126 0.90147 0.91823 0.93736 0.92045 0.91280 0.88206 0.90567
0.85628 0.82858 0.84456 0.79637 0.80539 0.81379 0.92032 1.00358
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -56.12 11.18 21.65 0.24 -55.87 16
2 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16
3 Si 0.97 44.39 29.59 68.60 2.03 46.42 16
4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16
5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16
6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16
7 C -0.25 -13.66 9.60 84.03 0.81 -12.85 16
8 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16
9 N -0.60 -30.07 2.63 -700.03 -1.84 -31.91 16
10 C 0.14 6.07 6.50 86.32 0.56 6.63 16
11 C -0.12 -4.23 4.93 30.14 0.15 -4.08 16
12 C 0.17 5.86 2.55 44.39 0.11 5.98 16
13 H 0.05 2.38 7.10 -2.38 -0.02 2.36 16
14 C -0.10 -3.84 2.50 -10.87 -0.03 -3.87 16
15 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16
16 C -0.10 -3.08 4.86 30.59 0.15 -2.94 16
17 C -0.12 -2.40 6.08 30.69 0.19 -2.21 16
18 C 0.10 1.70 5.84 86.34 0.50 2.20 16
19 N -0.61 -15.79 2.62 -796.95 -2.09 -17.88 16
20 C 0.51 13.85 7.64 87.66 0.67 14.52 16
21 O -0.58 -22.43 14.80 -3.02 -0.04 -22.47 16
22 C -0.08 -1.23 4.45 29.10 0.13 -1.10 16
23 C 0.11 2.21 5.76 42.55 0.25 2.46 16
24 C -0.13 -1.63 9.71 22.36 0.22 -1.42 16
25 C -0.11 -1.47 10.16 22.51 0.23 -1.24 16
26 C 0.03 0.58 7.34 22.47 0.17 0.75 16
27 F -0.14 -2.70 17.28 44.97 0.78 -1.92 16
28 C 0.06 1.38 11.17 84.73 0.95 2.32 16
29 N -0.47 -12.05 9.22 -183.71 -1.69 -13.75 16
30 C 0.19 9.19 4.69 86.23 0.40 9.59 16
31 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16
32 H 0.06 2.54 7.94 -2.39 -0.02 2.52 16
33 H 0.00 0.03 8.14 -2.38 -0.02 0.02 16
34 H 0.08 2.56 5.26 -2.39 -0.01 2.55 16
35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16
36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16
37 H 0.06 2.11 6.17 -2.39 -0.01 2.10 16
38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16
40 H 0.08 1.24 7.18 -2.38 -0.02 1.23 16
41 H 0.13 0.92 5.96 -2.39 -0.01 0.91 16
42 H 0.15 0.92 7.44 -2.38 -0.02 0.90 16
43 H 0.14 1.41 7.94 -2.39 -0.02 1.39 16
44 H 0.19 0.77 7.95 -2.91 -0.02 0.75 16
45 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16
46 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16
47 H 0.06 3.39 6.03 -2.39 -0.01 3.38 16
48 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16
Total: -1.00 -78.61 375.64 4.23 -74.39
By element:
Atomic # 1 Polarization: 9.72 SS G_CDS: 0.98 Total: 10.69 kcal
Atomic # 6 Polarization: 6.44 SS G_CDS: 5.87 Total: 12.31 kcal
Atomic # 7 Polarization: -114.04 SS G_CDS: -5.38 Total: -119.41 kcal
Atomic # 8 Polarization: -22.43 SS G_CDS: -0.04 Total: -22.47 kcal
Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.92 kcal
Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal
Total: -78.61 4.23 -74.39 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001021612679.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.339 kcal
(2) G-P(sol) polarization free energy of solvation -78.613 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.274 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.226 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.387 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.048 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds