Wall clock time and date at job start Wed Apr 1 2020 04:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00280 * 2 1 4 4 H 1.48504 * 109.46935 * 270.00042 * 3 2 1 5 5 H 1.48501 * 109.46914 * 29.99671 * 3 2 1 6 6 H 1.48494 * 109.47162 * 150.00093 * 3 2 1 7 7 C 1.38815 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00102 * 179.37725 * 7 2 1 9 9 N 1.36945 * 119.99650 * 359.37457 * 7 2 1 10 10 C 1.46868 * 120.46269 * 144.17060 * 9 7 2 11 11 C 1.53317 * 109.09732 * 127.33474 * 10 9 7 12 12 C 1.52891 * 108.95155 * 54.10196 * 11 10 9 13 13 H 1.08998 * 109.70179 * 57.90187 * 12 11 10 14 14 C 1.53272 * 109.15838 * 297.87625 * 12 11 10 15 15 H 1.08999 * 109.48037 * 303.54815 * 14 12 11 16 16 C 1.52827 * 109.16515 * 183.72665 * 14 12 11 17 17 C 1.53143 * 109.26537 * 61.81461 * 16 14 12 18 18 C 1.53602 * 109.53596 * 299.00517 * 17 16 14 19 19 N 1.46704 * 110.29599 * 178.63916 * 12 11 10 20 20 C 1.34775 * 120.84835 * 353.95230 * 19 12 11 21 21 O 1.21287 * 119.99768 * 354.96126 * 20 19 12 22 22 C 1.50701 * 120.00392 * 174.96395 * 20 19 12 23 23 C 1.50704 * 109.47231 * 180.02562 * 22 20 19 24 24 N 1.31863 * 119.64089 * 89.99452 * 23 22 20 25 25 C 1.31844 * 121.75230 * 179.97438 * 24 23 22 26 26 C 1.38229 * 120.82210 * 359.97438 * 25 24 23 27 27 C 1.38592 * 119.18798 * 0.02702 * 26 25 24 28 28 C 1.38430 * 119.63395 * 270.23154 * 23 22 20 29 29 F 1.35103 * 120.44251 * 0.02860 * 28 23 22 30 30 C 1.47068 * 120.47353 * 324.14935 * 9 7 2 31 31 H 0.97002 * 119.99915 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.52881 * 247.21628 * 10 9 7 33 33 H 1.08995 * 109.53592 * 7.36857 * 10 9 7 34 34 H 1.09004 * 109.55615 * 294.25517 * 11 10 9 35 35 H 1.09005 * 109.55449 * 173.94055 * 11 10 9 36 36 H 1.09002 * 109.50282 * 181.75153 * 16 14 12 37 37 H 1.08999 * 109.50389 * 301.87575 * 16 14 12 38 38 H 1.08999 * 109.44558 * 59.19043 * 17 16 14 39 39 H 1.09000 * 109.44534 * 179.13787 * 17 16 14 40 40 H 1.08997 * 109.71693 * 294.43650 * 18 17 16 41 41 H 1.08996 * 109.61981 * 174.01395 * 18 17 16 42 42 H 1.08996 * 109.47536 * 59.99829 * 22 20 19 43 43 H 1.09000 * 109.47126 * 299.99820 * 22 20 19 44 44 H 1.08000 * 119.58780 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.40634 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.80063 * 179.97438 * 27 26 25 47 47 H 1.08997 * 109.69252 * 113.62130 * 30 9 7 48 48 H 1.09002 * 109.71791 * 353.06706 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 -0.0096 9 7 1.3255 -2.3881 0.0140 10 6 1.8350 -3.5505 -0.7250 11 6 1.9128 -4.7529 0.2230 12 6 0.5457 -4.9599 0.8756 13 1 -0.2102 -5.1110 0.1050 14 6 0.1915 -3.7207 1.7051 15 1 0.9787 -3.5352 2.4358 16 6 -1.1308 -3.9645 2.4316 17 6 -0.9713 -5.1509 3.3868 18 6 -0.6094 -6.4104 2.5855 19 7 0.5782 -6.1254 1.7660 20 6 1.6664 -6.9181 1.8275 21 8 2.5993 -6.7267 1.0763 22 6 1.7243 -8.0423 2.8294 23 6 3.0372 -8.7696 2.6931 24 7 4.0774 -8.3760 3.4015 25 6 5.2450 -8.9822 3.3152 26 6 5.4215 -10.0626 2.4713 27 6 4.3523 -10.5070 1.7096 28 6 3.1391 -9.8405 1.8219 29 9 2.0712 -10.2356 1.0948 30 6 0.0699 -2.5158 0.7690 31 1 -0.4850 0.8401 -0.0004 32 1 1.1620 -3.7806 -1.5511 33 1 2.8280 -3.3277 -1.1152 34 1 2.6599 -4.5623 0.9935 35 1 2.1869 -5.6448 -0.3406 36 1 -1.4037 -3.0747 2.9989 37 1 -1.9108 -4.1860 1.7032 38 1 -0.1805 -4.9347 4.1051 39 1 -1.9084 -5.3177 3.9179 40 1 -1.4417 -6.6860 1.9379 41 1 -0.3916 -7.2299 3.2704 42 1 0.9036 -8.7356 2.6454 43 1 1.6375 -7.6358 3.8370 44 1 6.0737 -8.6307 3.9120 45 1 6.3810 -10.5539 2.4056 46 1 4.4613 -11.3484 1.0414 47 1 -0.7597 -2.6689 0.0789 48 1 -0.1011 -1.6120 1.3539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021662529.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:08 Heat of formation + Delta-G solvation = -9.545093 kcal Electronic energy + Delta-G solvation = -31728.582409 eV Core-core repulsion = 27505.861418 eV Total energy + Delta-G solvation = -4222.720991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.19043 -40.71348 -39.98441 -37.63698 -35.76679 -33.58774 -32.77879 -32.58974 -31.97396 -30.20258 -29.33479 -28.19855 -25.49903 -24.80357 -23.83074 -23.06444 -22.45638 -22.03579 -20.22065 -19.34888 -18.87118 -17.92206 -17.49070 -16.81260 -16.68556 -16.54182 -15.82730 -15.58335 -15.17208 -14.78027 -14.26820 -14.22695 -14.05565 -13.90501 -13.77792 -13.57465 -13.36653 -13.35427 -12.95010 -12.84955 -12.47082 -12.33269 -12.15048 -12.00289 -11.90659 -11.42834 -10.92022 -10.90127 -10.83231 -10.71347 -10.63996 -10.20353 -10.15197 -9.95852 -9.93439 -9.83793 -9.76218 -9.40198 -9.13890 -8.69283 -8.40705 -8.18660 -6.44041 -5.73096 -3.25029 0.65151 0.83650 2.79616 3.06320 3.40710 3.46313 3.47014 3.49056 3.75157 4.01359 4.30225 4.42937 4.53218 4.61664 4.65483 4.88650 5.01680 5.05310 5.13125 5.19704 5.30880 5.41395 5.42684 5.48048 5.53414 5.57520 5.64067 5.71462 5.74058 5.80296 5.97539 6.03130 6.20600 6.31609 6.34157 6.40361 6.47180 6.52614 6.64718 6.73999 6.88315 7.03662 7.12608 7.26782 7.45053 7.61197 7.68549 7.78581 7.85825 8.41752 8.59058 9.31001 9.90432 10.50792 11.34074 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.003002 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.230555 B = 9325.497436 C =10299.220002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.062 0.938 9 N -0.595 5.595 10 C 0.140 3.860 11 C -0.121 4.121 12 C 0.159 3.841 13 H 0.064 0.936 14 C -0.121 4.121 15 H 0.065 0.935 16 C -0.112 4.112 17 C -0.133 4.133 18 C 0.106 3.894 19 N -0.606 5.606 20 C 0.522 3.478 21 O -0.524 6.524 22 C -0.100 4.100 23 C 0.131 3.869 24 N -0.447 5.447 25 C 0.094 3.906 26 C -0.148 4.148 27 C -0.109 4.109 28 C 0.060 3.940 29 F -0.128 7.128 30 C 0.183 3.817 31 H 0.253 0.747 32 H 0.013 0.987 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.164 0.836 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.017 0.983 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.828 -22.397 8.726 24.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.079 0.921 9 N -0.317 5.317 10 C 0.013 3.987 11 C -0.160 4.160 12 C 0.057 3.943 13 H 0.082 0.918 14 C -0.143 4.143 15 H 0.083 0.917 16 C -0.150 4.150 17 C -0.171 4.171 18 C -0.017 4.017 19 N -0.339 5.339 20 C 0.309 3.691 21 O -0.400 6.400 22 C -0.140 4.140 23 C -0.009 4.009 24 N -0.155 5.155 25 C -0.063 4.063 26 C -0.168 4.168 27 C -0.135 4.135 28 C 0.039 3.961 29 F -0.107 7.107 30 C 0.057 3.943 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.181 0.819 45 H 0.162 0.838 46 H 0.165 0.835 47 H 0.035 0.965 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.097 -21.435 8.846 23.283 hybrid contribution 0.244 0.070 -0.645 0.693 sum 2.341 -21.364 8.201 23.004 Atomic orbital electron populations 1.69914 1.05271 1.25342 1.54580 1.25303 0.95523 0.98247 1.00032 0.86282 0.79147 0.83580 0.77717 1.21318 1.21674 1.20450 1.19180 0.90189 0.83283 1.45399 0.92079 1.44044 1.25300 1.08201 1.54198 1.21139 0.97486 0.87468 0.92589 1.22517 0.94314 0.99130 1.00022 1.21327 0.99268 0.83118 0.90546 0.91812 1.22313 0.96210 0.96987 0.98755 0.91657 1.21483 0.98230 0.97272 0.98000 1.22001 1.01481 0.95300 0.98346 1.21854 0.87960 0.97889 0.93974 1.48279 1.14509 1.28136 1.42993 1.20067 0.82472 0.82589 0.84002 1.90756 1.37006 1.70621 1.41646 1.20685 0.93818 0.97344 1.02162 1.20659 0.95226 0.92127 0.92908 1.67496 0.99120 1.27286 1.21569 1.22827 0.94745 0.92200 0.96566 1.22068 0.99527 0.98307 0.96859 1.21622 0.91428 1.00479 0.99989 1.18504 0.85256 0.97501 0.94880 1.91514 1.53818 1.89993 1.75349 1.20824 0.87402 0.94277 0.91808 0.93640 0.96874 0.92782 0.92037 0.90046 0.91552 0.92147 0.91642 0.91219 0.91284 0.90397 0.87375 0.86590 0.81865 0.83756 0.83545 0.96500 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.40 10.86 55.49 0.60 -25.79 16 2 C 0.01 0.21 5.23 -17.43 -0.09 0.12 16 3 Si 0.90 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -7.13 9.53 -15.05 -0.14 -7.27 16 8 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.59 -15.58 2.99 -172.25 -0.52 -16.10 16 10 C 0.14 3.24 6.50 -3.68 -0.02 3.21 16 11 C -0.12 -2.50 3.82 -26.62 -0.10 -2.61 16 12 C 0.16 2.92 2.63 -67.74 -0.18 2.74 16 13 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.12 -2.34 2.21 -90.53 -0.20 -2.54 16 15 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 16 C -0.11 -1.70 5.24 -26.75 -0.14 -1.84 16 17 C -0.13 -1.56 6.08 -26.34 -0.16 -1.72 16 18 C 0.11 1.18 6.38 -3.42 -0.02 1.16 16 19 N -0.61 -9.17 2.96 -165.04 -0.49 -9.66 16 20 C 0.52 8.23 7.58 -10.99 -0.08 8.14 16 21 O -0.52 -10.15 11.70 5.55 0.06 -10.08 16 22 C -0.10 -1.18 4.17 -29.03 -0.12 -1.30 16 23 C 0.13 1.68 5.28 -82.51 -0.44 1.24 16 24 N -0.45 -5.81 10.27 -9.42 -0.10 -5.91 16 25 C 0.09 0.92 11.18 -17.55 -0.20 0.73 16 26 C -0.15 -1.18 10.11 -39.45 -0.40 -1.58 16 27 C -0.11 -1.00 10.16 -39.22 -0.40 -1.40 16 28 C 0.06 0.71 7.27 -39.28 -0.29 0.43 16 29 F -0.13 -1.57 16.50 2.25 0.04 -1.53 16 30 C 0.18 4.40 4.55 -3.70 -0.02 4.39 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 1.25 7.93 -51.93 -0.41 0.84 16 34 H 0.06 1.41 7.46 -51.93 -0.39 1.03 16 35 H 0.08 1.70 6.12 -51.93 -0.32 1.38 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.64 5.96 -51.93 -0.31 0.33 16 42 H 0.11 1.00 7.23 -51.93 -0.38 0.63 16 43 H 0.12 1.20 7.92 -51.93 -0.41 0.79 16 44 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 45 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.09 2.52 6.15 -51.93 -0.32 2.20 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -33.79 376.43 -9.90 -43.69 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.15 Total: 0.70 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -3.00 Total: 1.90 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.50 Total: -57.46 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.06 Total: -10.08 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.79 -9.90 -43.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021662529.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.140 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds