Wall clock time and date at job start Wed Apr 1 2020 04:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00280 * 2 1 4 4 H 1.48504 * 109.46935 * 270.00042 * 3 2 1 5 5 H 1.48501 * 109.46914 * 29.99671 * 3 2 1 6 6 H 1.48494 * 109.47162 * 150.00093 * 3 2 1 7 7 C 1.38815 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00102 * 179.37725 * 7 2 1 9 9 N 1.36945 * 119.99650 * 359.37457 * 7 2 1 10 10 C 1.46868 * 120.46269 * 144.17060 * 9 7 2 11 11 C 1.53317 * 109.09732 * 127.33474 * 10 9 7 12 12 C 1.52891 * 108.95155 * 54.10196 * 11 10 9 13 13 H 1.08998 * 109.70179 * 57.90187 * 12 11 10 14 14 C 1.53272 * 109.15838 * 297.87625 * 12 11 10 15 15 H 1.08999 * 109.48037 * 303.54815 * 14 12 11 16 16 C 1.52827 * 109.16515 * 183.72665 * 14 12 11 17 17 C 1.53143 * 109.26537 * 61.81461 * 16 14 12 18 18 C 1.53602 * 109.53596 * 299.00517 * 17 16 14 19 19 N 1.46704 * 110.29599 * 178.63916 * 12 11 10 20 20 C 1.34775 * 120.84835 * 353.95230 * 19 12 11 21 21 O 1.21287 * 119.99768 * 354.96126 * 20 19 12 22 22 C 1.50701 * 120.00392 * 174.96395 * 20 19 12 23 23 C 1.50704 * 109.47231 * 180.02562 * 22 20 19 24 24 N 1.31863 * 119.64089 * 89.99452 * 23 22 20 25 25 C 1.31844 * 121.75230 * 179.97438 * 24 23 22 26 26 C 1.38229 * 120.82210 * 359.97438 * 25 24 23 27 27 C 1.38592 * 119.18798 * 0.02702 * 26 25 24 28 28 C 1.38430 * 119.63395 * 270.23154 * 23 22 20 29 29 F 1.35103 * 120.44251 * 0.02860 * 28 23 22 30 30 C 1.47068 * 120.47353 * 324.14935 * 9 7 2 31 31 H 0.97002 * 119.99915 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.52881 * 247.21628 * 10 9 7 33 33 H 1.08995 * 109.53592 * 7.36857 * 10 9 7 34 34 H 1.09004 * 109.55615 * 294.25517 * 11 10 9 35 35 H 1.09005 * 109.55449 * 173.94055 * 11 10 9 36 36 H 1.09002 * 109.50282 * 181.75153 * 16 14 12 37 37 H 1.08999 * 109.50389 * 301.87575 * 16 14 12 38 38 H 1.08999 * 109.44558 * 59.19043 * 17 16 14 39 39 H 1.09000 * 109.44534 * 179.13787 * 17 16 14 40 40 H 1.08997 * 109.71693 * 294.43650 * 18 17 16 41 41 H 1.08996 * 109.61981 * 174.01395 * 18 17 16 42 42 H 1.08996 * 109.47536 * 59.99829 * 22 20 19 43 43 H 1.09000 * 109.47126 * 299.99820 * 22 20 19 44 44 H 1.08000 * 119.58780 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.40634 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.80063 * 179.97438 * 27 26 25 47 47 H 1.08997 * 109.69252 * 113.62130 * 30 9 7 48 48 H 1.09002 * 109.71791 * 353.06706 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 -0.0096 9 7 1.3255 -2.3881 0.0140 10 6 1.8350 -3.5505 -0.7250 11 6 1.9128 -4.7529 0.2230 12 6 0.5457 -4.9599 0.8756 13 1 -0.2102 -5.1110 0.1050 14 6 0.1915 -3.7207 1.7051 15 1 0.9787 -3.5352 2.4358 16 6 -1.1308 -3.9645 2.4316 17 6 -0.9713 -5.1509 3.3868 18 6 -0.6094 -6.4104 2.5855 19 7 0.5782 -6.1254 1.7660 20 6 1.6664 -6.9181 1.8275 21 8 2.5993 -6.7267 1.0763 22 6 1.7243 -8.0423 2.8294 23 6 3.0372 -8.7696 2.6931 24 7 4.0774 -8.3760 3.4015 25 6 5.2450 -8.9822 3.3152 26 6 5.4215 -10.0626 2.4713 27 6 4.3523 -10.5070 1.7096 28 6 3.1391 -9.8405 1.8219 29 9 2.0712 -10.2356 1.0948 30 6 0.0699 -2.5158 0.7690 31 1 -0.4850 0.8401 -0.0004 32 1 1.1620 -3.7806 -1.5511 33 1 2.8280 -3.3277 -1.1152 34 1 2.6599 -4.5623 0.9935 35 1 2.1869 -5.6448 -0.3406 36 1 -1.4037 -3.0747 2.9989 37 1 -1.9108 -4.1860 1.7032 38 1 -0.1805 -4.9347 4.1051 39 1 -1.9084 -5.3177 3.9179 40 1 -1.4417 -6.6860 1.9379 41 1 -0.3916 -7.2299 3.2704 42 1 0.9036 -8.7356 2.6454 43 1 1.6375 -7.6358 3.8370 44 1 6.0737 -8.6307 3.9120 45 1 6.3810 -10.5539 2.4056 46 1 4.4613 -11.3484 1.0414 47 1 -0.7597 -2.6689 0.0789 48 1 -0.1011 -1.6120 1.3539 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021662529.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:07 Heat of formation + Delta-G solvation = -30.170081 kcal Electronic energy + Delta-G solvation = -31729.476776 eV Core-core repulsion = 27505.861418 eV Total energy + Delta-G solvation = -4223.615358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.03433 -41.86260 -40.93266 -39.09657 -37.33382 -34.82768 -34.14123 -33.99917 -32.90617 -31.88406 -30.87229 -29.29218 -27.24897 -26.17752 -24.64533 -24.36871 -23.89226 -23.38098 -21.58455 -21.12970 -20.05466 -18.73643 -18.71894 -18.27463 -17.88359 -17.51930 -16.95345 -16.74391 -16.63014 -16.37356 -15.59594 -15.48905 -15.30453 -15.12220 -14.94296 -14.75661 -14.74530 -14.39175 -14.15510 -14.02582 -13.84919 -13.70252 -13.52923 -13.18888 -13.09190 -12.87049 -12.79198 -12.72679 -12.58045 -12.14862 -12.06940 -12.04050 -11.71399 -11.63629 -11.48135 -11.05675 -10.89229 -10.61254 -10.59272 -10.20496 -9.82311 -9.51370 -8.54989 -7.89250 -5.46581 -0.11288 0.11045 1.43327 1.44479 1.54063 1.61541 1.96736 2.46964 2.63878 2.99511 3.22848 3.25104 3.53321 3.58975 3.63276 3.77378 3.88133 3.94622 3.99291 4.03810 4.13387 4.28454 4.30485 4.34465 4.39122 4.49541 4.55501 4.60329 4.68297 4.73051 4.79966 4.85808 4.91380 4.92966 4.95956 5.00823 5.02397 5.13474 5.18523 5.32876 5.38471 5.43169 5.54011 5.61519 5.63539 5.68477 5.79061 6.41515 6.50256 6.85147 7.14886 7.21016 7.81031 8.36235 9.14634 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.003002 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.230555 B = 9325.497436 C =10299.220002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.040 4.040 3 Si 0.970 3.030 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.274 4.274 8 H 0.053 0.947 9 N -0.614 5.614 10 C 0.138 3.862 11 C -0.098 4.098 12 C 0.166 3.834 13 H 0.065 0.935 14 C -0.107 4.107 15 H 0.039 0.961 16 C -0.109 4.109 17 C -0.124 4.124 18 C 0.100 3.900 19 N -0.606 5.606 20 C 0.514 3.486 21 O -0.568 6.568 22 C -0.089 4.089 23 C 0.104 3.896 24 N -0.481 5.481 25 C 0.081 3.919 26 C -0.134 4.134 27 C -0.111 4.111 28 C 0.039 3.961 29 F -0.135 7.135 30 C 0.193 3.807 31 H 0.253 0.747 32 H 0.014 0.986 33 H 0.044 0.956 34 H 0.033 0.967 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.188 0.812 45 H 0.185 0.815 46 H 0.173 0.827 47 H 0.000 1.000 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 -24.737 10.142 26.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.236 4.236 3 Si 0.797 3.203 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.404 4.404 8 H 0.071 0.929 9 N -0.338 5.338 10 C 0.012 3.988 11 C -0.137 4.137 12 C 0.063 3.937 13 H 0.083 0.917 14 C -0.128 4.128 15 H 0.058 0.942 16 C -0.147 4.147 17 C -0.162 4.162 18 C -0.021 4.021 19 N -0.338 5.338 20 C 0.303 3.697 21 O -0.448 6.448 22 C -0.129 4.129 23 C -0.035 4.035 24 N -0.189 5.189 25 C -0.076 4.076 26 C -0.153 4.153 27 C -0.137 4.137 28 C 0.017 3.983 29 F -0.114 7.114 30 C 0.067 3.933 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.205 0.795 45 H 0.202 0.798 46 H 0.191 0.809 47 H 0.018 0.982 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.034 -23.810 10.288 26.017 hybrid contribution 0.344 0.767 -1.111 1.393 sum 2.378 -23.043 9.177 24.917 Atomic orbital electron populations 1.70082 1.06460 1.25964 1.54955 1.26031 0.96430 1.01351 0.99757 0.85244 0.78004 0.79287 0.77717 1.20877 1.21182 1.19862 1.19409 0.90229 0.84706 1.46043 0.92908 1.44308 1.25729 1.08448 1.55314 1.21212 0.96743 0.87706 0.93104 1.22213 0.95268 0.97541 0.98681 1.20959 0.97371 0.84377 0.90970 0.91719 1.22020 0.98031 0.95385 0.97383 0.94215 1.21466 0.95556 0.99092 0.98589 1.21968 1.03283 0.93597 0.97395 1.22241 0.86768 0.98713 0.94394 1.48301 1.16011 1.26725 1.42805 1.20808 0.81615 0.83159 0.84093 1.90716 1.38518 1.71990 1.43585 1.20668 0.94840 0.96153 1.01258 1.20791 0.95668 0.93011 0.93999 1.67475 1.00245 1.28514 1.22692 1.23400 0.94520 0.92596 0.97130 1.22499 1.00715 0.97178 0.94938 1.22048 0.90676 1.00813 1.00156 1.18764 0.86099 0.98182 0.95241 1.91486 1.54284 1.90085 1.75557 1.20611 0.86076 0.95063 0.91569 0.93778 0.96801 0.93758 0.94804 0.89998 0.92165 0.91337 0.92257 0.87397 0.89413 0.86604 0.84581 0.85006 0.79493 0.79814 0.80936 0.98191 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 10.86 21.65 0.24 -55.57 16 2 C -0.04 -2.30 5.23 84.86 0.44 -1.86 16 3 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.27 -16.24 9.53 84.03 0.80 -15.44 16 8 H 0.05 3.14 7.83 -2.91 -0.02 3.12 16 9 N -0.61 -33.81 2.99 -698.87 -2.09 -35.90 16 10 C 0.14 6.74 6.50 86.42 0.56 7.30 16 11 C -0.10 -4.24 3.82 30.66 0.12 -4.12 16 12 C 0.17 6.18 2.63 45.01 0.12 6.29 16 13 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.11 -4.24 2.21 -10.74 -0.02 -4.26 16 15 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 16 C -0.11 -3.21 5.24 30.58 0.16 -3.05 16 17 C -0.12 -2.53 6.08 30.84 0.19 -2.34 16 18 C 0.10 1.87 6.38 86.47 0.55 2.42 16 19 N -0.61 -17.60 2.96 -794.45 -2.35 -19.95 16 20 C 0.51 15.84 7.58 87.66 0.66 16.51 16 21 O -0.57 -22.44 11.70 -3.05 -0.04 -22.48 16 22 C -0.09 -1.94 4.17 29.10 0.12 -1.82 16 23 C 0.10 2.57 5.28 42.60 0.22 2.80 16 24 N -0.48 -12.07 10.27 -183.72 -1.89 -13.96 16 25 C 0.08 1.44 11.18 84.69 0.95 2.39 16 26 C -0.13 -1.77 10.11 22.35 0.23 -1.54 16 27 C -0.11 -1.79 10.16 22.51 0.23 -1.56 16 28 C 0.04 0.87 7.27 22.47 0.16 1.03 16 29 F -0.14 -3.15 16.50 44.97 0.74 -2.41 16 30 C 0.19 9.71 4.55 86.29 0.39 10.10 16 31 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 32 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.04 2.17 7.93 -2.39 -0.02 2.16 16 34 H 0.03 1.63 7.46 -2.38 -0.02 1.61 16 35 H 0.08 3.56 6.12 -2.38 -0.01 3.54 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.12 1.36 5.96 -2.39 -0.01 1.34 16 42 H 0.14 2.11 7.23 -2.39 -0.02 2.09 16 43 H 0.13 2.40 7.92 -2.39 -0.02 2.38 16 44 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 45 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 46 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 47 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 48 H 0.06 3.46 6.15 -2.39 -0.01 3.44 16 Total: -1.00 -78.89 376.43 3.49 -75.40 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.97 Total: 13.48 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 5.89 Total: 12.85 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -6.10 Total: -125.39 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.04 Total: -22.48 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.74 Total: -2.41 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -78.89 3.49 -75.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021662529.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.229 kcal (2) G-P(sol) polarization free energy of solvation -78.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds