Wall clock time and date at job start Wed Apr 1 2020 04:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00140 * 2 1 4 4 H 1.48498 * 109.47054 * 240.00196 * 3 2 1 5 5 H 1.48499 * 109.46908 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47183 * 119.99894 * 3 2 1 7 7 C 1.38816 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99429 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99992 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.65018 * 344.90081 * 9 7 2 11 11 C 1.54912 * 104.83133 * 204.16195 * 10 9 7 12 12 C 1.55153 * 101.58060 * 322.98985 * 11 10 9 13 13 C 1.47027 * 125.64523 * 164.93686 * 9 7 2 14 14 H 1.09004 * 109.87879 * 59.33882 * 13 9 7 15 15 C 1.52998 * 109.88505 * 298.32429 * 13 9 7 16 16 H 1.09004 * 109.69773 * 47.66273 * 15 13 9 17 17 C 1.53190 * 109.58869 * 287.30425 * 15 13 9 18 18 C 1.53036 * 109.31287 * 185.57437 * 17 15 13 19 19 C 1.53047 * 109.53727 * 61.36601 * 18 17 15 20 20 C 1.53621 * 109.23899 * 298.51059 * 19 18 17 21 21 N 1.46920 * 109.58637 * 168.01270 * 15 13 9 22 22 C 1.34779 * 120.63138 * 353.37495 * 21 15 13 23 23 O 1.21567 * 120.00036 * 357.70833 * 22 21 15 24 24 C 1.47726 * 119.99954 * 177.71197 * 22 21 15 25 25 C 1.40156 * 120.52808 * 217.37897 * 24 22 21 26 26 C 1.38159 * 118.31832 * 180.28204 * 25 24 22 27 27 C 1.38753 * 119.28527 * 359.49501 * 26 25 24 28 28 F 1.35103 * 119.48778 * 180.24989 * 27 26 25 29 29 N 1.32136 * 121.01388 * 0.26989 * 27 26 25 30 30 C 1.31694 * 121.84703 * 359.97438 * 29 27 26 31 31 H 0.97009 * 120.00273 * 0.02562 * 1 2 3 32 32 H 1.08997 * 110.36908 * 323.00116 * 10 9 7 33 33 H 1.09001 * 110.36594 * 85.32424 * 10 9 7 34 34 H 1.08997 * 111.00357 * 81.06343 * 11 10 9 35 35 H 1.09005 * 111.00599 * 204.91757 * 11 10 9 36 36 H 1.08995 * 110.72143 * 277.13546 * 12 11 10 37 37 H 1.09005 * 110.71703 * 153.86390 * 12 11 10 38 38 H 1.09003 * 109.49541 * 305.52981 * 17 15 13 39 39 H 1.09000 * 109.49659 * 65.59139 * 17 15 13 40 40 H 1.09004 * 109.45655 * 181.38318 * 18 17 15 41 41 H 1.08994 * 109.46465 * 301.36211 * 18 17 15 42 42 H 1.09005 * 109.49522 * 58.58273 * 19 18 17 43 43 H 1.08992 * 109.49700 * 178.64886 * 19 18 17 44 44 H 1.08998 * 109.73883 * 295.11639 * 20 19 18 45 45 H 1.09004 * 109.66367 * 174.54345 * 20 19 18 46 46 H 1.07998 * 120.84484 * 0.04953 * 25 24 22 47 47 H 1.08004 * 120.35444 * 179.76154 * 26 25 24 48 48 H 1.07993 * 119.70193 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1057 -2.5539 0.3120 11 6 -0.2416 -4.0243 0.7800 12 6 0.7635 -4.7438 -0.1578 13 6 1.8960 -3.7069 -0.3116 14 1 2.7058 -3.9334 0.3821 15 6 2.4225 -3.7206 -1.7481 16 1 3.0276 -2.8315 -1.9260 17 6 1.2442 -3.7442 -2.7267 18 6 1.7746 -3.8980 -4.1539 19 6 2.5326 -5.2218 -4.2784 20 6 3.7302 -5.2118 -3.3163 21 7 3.2391 -4.9230 -1.9619 22 6 3.5368 -5.7427 -0.9343 23 8 3.1640 -5.4682 0.1898 24 6 4.3162 -6.9745 -1.1739 25 6 4.0228 -8.1507 -0.4705 26 6 4.7846 -9.2746 -0.7262 27 6 5.7993 -9.2064 -1.6701 28 9 6.5434 -10.3044 -1.9271 29 7 6.0493 -8.0841 -2.3211 30 6 5.3530 -6.9869 -2.1073 31 1 -0.4851 0.8401 -0.0004 32 1 -0.4011 -1.8729 1.1102 33 1 -0.7108 -2.3816 -0.5781 34 1 0.0532 -4.1309 1.8240 35 1 -1.2554 -4.3925 0.6224 36 1 0.3043 -4.9593 -1.1225 37 1 1.1371 -5.6572 0.3053 38 1 0.5907 -4.5836 -2.4890 39 1 0.6843 -2.8126 -2.6446 40 1 0.9395 -3.8905 -4.8544 41 1 2.4477 -3.0717 -4.3822 42 1 1.8669 -6.0472 -4.0260 43 1 2.8895 -5.3418 -5.3012 44 1 4.4396 -4.4419 -3.6196 45 1 4.2181 -6.1864 -3.3279 46 1 3.2239 -8.1769 0.2558 47 1 4.5894 -10.1975 -0.2002 48 1 5.5868 -6.0887 -2.6594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025207002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:25 Heat of formation + Delta-G solvation = 38.984645 kcal Electronic energy + Delta-G solvation = -32327.101339 eV Core-core repulsion = 28106.484755 eV Total energy + Delta-G solvation = -4220.616584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.37893 -41.24953 -39.76553 -37.38015 -36.78295 -33.20799 -33.09884 -32.48012 -31.73488 -30.45833 -29.22139 -27.24793 -25.36585 -24.55791 -24.36509 -23.95044 -22.68989 -21.15960 -20.25508 -19.75864 -18.83424 -18.41326 -17.74221 -17.17368 -16.52177 -16.43290 -15.47361 -15.37412 -15.25428 -14.93681 -14.58600 -14.37374 -14.18983 -14.03563 -13.77560 -13.57934 -13.42927 -13.35006 -13.04684 -12.93785 -12.79814 -12.08377 -11.83646 -11.57402 -11.44841 -11.29196 -10.99184 -10.85297 -10.72847 -10.59388 -10.45836 -10.33021 -10.16681 -10.05876 -9.92539 -9.67089 -9.63973 -9.51867 -9.23525 -8.72264 -8.47855 -8.15518 -6.58113 -5.67862 -3.01450 0.24821 0.68598 2.64834 2.98104 3.13082 3.35257 3.41865 3.47227 3.47675 4.05069 4.26465 4.38976 4.50790 4.55384 4.73849 4.89806 4.95414 5.04887 5.18149 5.32268 5.39289 5.46005 5.47969 5.49143 5.59254 5.68418 5.75823 5.84711 5.88080 5.97106 6.03915 6.09732 6.10563 6.17757 6.33052 6.38452 6.50716 6.54632 6.71107 6.79572 6.92321 6.93815 7.02991 7.14147 7.50605 7.62652 7.65408 7.72786 7.88500 8.30058 8.44384 9.28744 9.91298 10.62560 11.43927 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.003228 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.093649 B = 8671.414866 C = 8903.947133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.223 4.223 8 H 0.071 0.929 9 N -0.594 5.594 10 C 0.175 3.825 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.141 3.859 14 H 0.102 0.898 15 C 0.136 3.864 16 H 0.079 0.921 17 C -0.129 4.129 18 C -0.121 4.121 19 C -0.131 4.131 20 C 0.082 3.918 21 N -0.592 5.592 22 C 0.554 3.446 23 O -0.501 6.501 24 C -0.184 4.184 25 C 0.004 3.996 26 C -0.197 4.197 27 C 0.318 3.682 28 F -0.110 7.110 29 N -0.516 5.516 30 C 0.156 3.844 31 H 0.252 0.748 32 H 0.065 0.935 33 H 0.021 0.979 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.157 0.843 47 H 0.154 0.846 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.357 -17.714 -7.099 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.089 0.911 9 N -0.318 5.318 10 C 0.050 3.950 11 C -0.188 4.188 12 C -0.164 4.164 13 C 0.034 3.966 14 H 0.119 0.881 15 C 0.033 3.967 16 H 0.097 0.903 17 C -0.167 4.167 18 C -0.159 4.159 19 C -0.169 4.169 20 C -0.042 4.042 21 N -0.324 5.324 22 C 0.340 3.660 23 O -0.377 6.377 24 C -0.190 4.190 25 C -0.022 4.022 26 C -0.218 4.218 27 C 0.165 3.835 28 F -0.089 7.089 29 N -0.230 5.230 30 C -0.001 4.001 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.174 0.826 47 H 0.172 0.828 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.779 -17.346 -7.095 19.929 hybrid contribution -0.030 0.728 0.149 0.744 sum 6.749 -16.618 -6.945 19.234 Atomic orbital electron populations 1.69936 1.04896 1.25028 1.56540 1.24870 0.95582 0.97540 1.02123 0.86310 0.78589 0.83644 0.77895 1.21258 1.21731 1.21226 1.18900 0.90207 0.82485 1.43646 0.91144 1.44684 1.06473 1.01818 1.78869 1.21352 0.85366 0.90004 0.98253 1.22989 0.97175 0.99800 0.98805 1.22859 0.96501 0.98075 0.98924 1.22282 0.96823 0.85813 0.91659 0.88126 1.22360 0.90674 0.84200 0.99510 0.90312 1.22072 0.98178 1.03565 0.92855 1.21561 0.99724 0.96609 0.97985 1.21964 0.97259 0.99016 0.98667 1.22507 0.97161 1.01850 0.82639 1.48253 1.51566 1.25476 1.07153 1.17929 0.80198 0.82484 0.85352 1.90758 1.52588 1.71432 1.22952 1.21321 1.00540 0.96722 1.00414 1.21592 0.96482 0.89553 0.94564 1.21819 0.97396 1.01700 1.00907 1.18387 0.89152 0.83040 0.92893 1.91642 1.75320 1.49067 1.92917 1.67056 1.29565 0.99134 1.27276 1.23164 0.89292 0.95177 0.92475 0.93813 0.91668 0.96116 0.92652 0.93135 0.92144 0.91792 0.91389 0.89495 0.92173 0.91923 0.91719 0.91161 0.90663 0.89113 0.82559 0.82793 0.80115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.59 55.49 0.59 -25.95 16 2 C 0.00 -0.12 5.47 -17.43 -0.10 -0.22 16 3 Si 0.90 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.22 -6.09 9.59 -15.06 -0.14 -6.23 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.59 -14.81 3.04 -162.57 -0.49 -15.30 16 10 C 0.18 4.28 5.40 -2.53 -0.01 4.26 16 11 C -0.15 -2.99 7.09 -24.58 -0.17 -3.16 16 12 C -0.13 -2.36 5.42 -24.90 -0.13 -2.49 16 13 C 0.14 2.92 2.29 -66.95 -0.15 2.77 16 14 H 0.10 2.32 5.09 -56.26 -0.29 2.04 16 15 C 0.14 2.40 2.76 -67.60 -0.19 2.22 16 16 H 0.08 1.57 7.67 -51.93 -0.40 1.18 16 17 C -0.13 -2.11 4.91 -26.61 -0.13 -2.24 16 18 C -0.12 -1.54 5.88 -26.69 -0.16 -1.70 16 19 C -0.13 -1.33 6.10 -26.38 -0.16 -1.49 16 20 C 0.08 0.84 5.01 -3.49 -0.02 0.82 16 21 N -0.59 -8.23 2.96 -166.11 -0.49 -8.73 16 22 C 0.55 7.93 6.99 -12.38 -0.09 7.85 16 23 O -0.50 -8.85 10.53 5.31 0.06 -8.79 16 24 C -0.18 -2.07 5.43 -104.83 -0.57 -2.64 16 25 C 0.00 0.04 9.77 -38.89 -0.38 -0.34 16 26 C -0.20 -1.65 10.07 -39.42 -0.40 -2.05 16 27 C 0.32 3.28 8.41 -17.23 -0.14 3.13 16 28 F -0.11 -1.14 17.29 2.25 0.04 -1.10 16 29 N -0.52 -5.79 10.36 -13.22 -0.14 -5.93 16 30 C 0.16 1.60 8.56 -17.14 -0.15 1.45 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.06 1.79 6.96 -51.93 -0.36 1.43 16 33 H 0.02 0.54 8.05 -51.93 -0.42 0.12 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.07 4.84 -51.93 -0.25 0.82 16 37 H 0.06 1.16 6.38 -51.93 -0.33 0.83 16 38 H 0.07 1.10 5.35 -51.93 -0.28 0.82 16 39 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.79 3.79 -51.93 -0.20 0.59 16 46 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 48 H 0.18 1.54 5.76 -52.49 -0.30 1.24 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -30.89 366.07 -9.64 -40.53 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.60 Total: 2.92 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -3.09 Total: -0.06 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.54 Total: -55.90 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.06 Total: -8.79 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.89 -9.64 -40.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025207002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.514 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds