Wall clock time and date at job start Wed Apr 1 2020 04:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00140 * 2 1 4 4 H 1.48498 * 109.47054 * 240.00196 * 3 2 1 5 5 H 1.48499 * 109.46908 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47183 * 119.99894 * 3 2 1 7 7 C 1.38816 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99429 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99992 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.65018 * 344.90081 * 9 7 2 11 11 C 1.54912 * 104.83133 * 204.16195 * 10 9 7 12 12 C 1.55153 * 101.58060 * 322.98985 * 11 10 9 13 13 C 1.47027 * 125.64523 * 164.93686 * 9 7 2 14 14 H 1.09004 * 109.87879 * 59.33882 * 13 9 7 15 15 C 1.52998 * 109.88505 * 298.32429 * 13 9 7 16 16 H 1.09004 * 109.69773 * 47.66273 * 15 13 9 17 17 C 1.53190 * 109.58869 * 287.30425 * 15 13 9 18 18 C 1.53036 * 109.31287 * 185.57437 * 17 15 13 19 19 C 1.53047 * 109.53727 * 61.36601 * 18 17 15 20 20 C 1.53621 * 109.23899 * 298.51059 * 19 18 17 21 21 N 1.46920 * 109.58637 * 168.01270 * 15 13 9 22 22 C 1.34779 * 120.63138 * 353.37495 * 21 15 13 23 23 O 1.21567 * 120.00036 * 357.70833 * 22 21 15 24 24 C 1.47726 * 119.99954 * 177.71197 * 22 21 15 25 25 C 1.40156 * 120.52808 * 217.37897 * 24 22 21 26 26 C 1.38159 * 118.31832 * 180.28204 * 25 24 22 27 27 C 1.38753 * 119.28527 * 359.49501 * 26 25 24 28 28 F 1.35103 * 119.48778 * 180.24989 * 27 26 25 29 29 N 1.32136 * 121.01388 * 0.26989 * 27 26 25 30 30 C 1.31694 * 121.84703 * 359.97438 * 29 27 26 31 31 H 0.97009 * 120.00273 * 0.02562 * 1 2 3 32 32 H 1.08997 * 110.36908 * 323.00116 * 10 9 7 33 33 H 1.09001 * 110.36594 * 85.32424 * 10 9 7 34 34 H 1.08997 * 111.00357 * 81.06343 * 11 10 9 35 35 H 1.09005 * 111.00599 * 204.91757 * 11 10 9 36 36 H 1.08995 * 110.72143 * 277.13546 * 12 11 10 37 37 H 1.09005 * 110.71703 * 153.86390 * 12 11 10 38 38 H 1.09003 * 109.49541 * 305.52981 * 17 15 13 39 39 H 1.09000 * 109.49659 * 65.59139 * 17 15 13 40 40 H 1.09004 * 109.45655 * 181.38318 * 18 17 15 41 41 H 1.08994 * 109.46465 * 301.36211 * 18 17 15 42 42 H 1.09005 * 109.49522 * 58.58273 * 19 18 17 43 43 H 1.08992 * 109.49700 * 178.64886 * 19 18 17 44 44 H 1.08998 * 109.73883 * 295.11639 * 20 19 18 45 45 H 1.09004 * 109.66367 * 174.54345 * 20 19 18 46 46 H 1.07998 * 120.84484 * 0.04953 * 25 24 22 47 47 H 1.08004 * 120.35444 * 179.76154 * 26 25 24 48 48 H 1.07993 * 119.70193 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1057 -2.5539 0.3120 11 6 -0.2416 -4.0243 0.7800 12 6 0.7635 -4.7438 -0.1578 13 6 1.8960 -3.7069 -0.3116 14 1 2.7058 -3.9334 0.3821 15 6 2.4225 -3.7206 -1.7481 16 1 3.0276 -2.8315 -1.9260 17 6 1.2442 -3.7442 -2.7267 18 6 1.7746 -3.8980 -4.1539 19 6 2.5326 -5.2218 -4.2784 20 6 3.7302 -5.2118 -3.3163 21 7 3.2391 -4.9230 -1.9619 22 6 3.5368 -5.7427 -0.9343 23 8 3.1640 -5.4682 0.1898 24 6 4.3162 -6.9745 -1.1739 25 6 4.0228 -8.1507 -0.4705 26 6 4.7846 -9.2746 -0.7262 27 6 5.7993 -9.2064 -1.6701 28 9 6.5434 -10.3044 -1.9271 29 7 6.0493 -8.0841 -2.3211 30 6 5.3530 -6.9869 -2.1073 31 1 -0.4851 0.8401 -0.0004 32 1 -0.4011 -1.8729 1.1102 33 1 -0.7108 -2.3816 -0.5781 34 1 0.0532 -4.1309 1.8240 35 1 -1.2554 -4.3925 0.6224 36 1 0.3043 -4.9593 -1.1225 37 1 1.1371 -5.6572 0.3053 38 1 0.5907 -4.5836 -2.4890 39 1 0.6843 -2.8126 -2.6446 40 1 0.9395 -3.8905 -4.8544 41 1 2.4477 -3.0717 -4.3822 42 1 1.8669 -6.0472 -4.0260 43 1 2.8895 -5.3418 -5.3012 44 1 4.4396 -4.4419 -3.6196 45 1 4.2181 -6.1864 -3.3279 46 1 3.2239 -8.1769 0.2558 47 1 4.5894 -10.1975 -0.2002 48 1 5.5868 -6.0887 -2.6594 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025207002.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:24 Heat of formation + Delta-G solvation = 20.587113 kcal Electronic energy + Delta-G solvation = -32327.899116 eV Core-core repulsion = 28106.484755 eV Total energy + Delta-G solvation = -4221.414361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.14911 -42.30802 -40.79437 -38.77878 -38.13946 -34.67541 -34.07597 -33.86998 -32.95310 -31.51487 -31.11985 -28.68394 -26.69686 -26.23419 -25.35562 -24.88549 -23.95246 -22.37375 -21.72528 -21.32010 -20.05109 -19.26126 -19.01118 -18.34383 -17.86748 -17.24785 -16.98036 -16.72999 -16.33228 -16.26804 -15.92891 -15.77759 -15.35964 -15.08400 -14.90776 -14.70188 -14.55820 -14.27661 -14.19639 -14.08456 -13.87141 -13.76430 -13.53333 -13.10213 -12.95739 -12.79683 -12.67352 -12.52367 -12.07793 -11.96974 -11.92260 -11.65771 -11.62566 -11.41158 -11.22711 -11.14000 -11.03930 -10.96575 -10.64957 -10.12705 -9.96351 -9.48318 -8.56831 -7.80523 -5.15381 -0.56365 -0.04475 1.45107 1.47425 1.53724 1.62687 1.89348 2.36735 2.48738 2.53620 3.24218 3.36455 3.42695 3.63779 3.74002 3.83738 3.89681 3.95658 3.98158 4.12321 4.20292 4.22032 4.31538 4.39363 4.46140 4.47960 4.53836 4.63993 4.75090 4.79788 4.83044 4.90051 4.93048 5.00031 5.07410 5.10632 5.24298 5.26864 5.28586 5.35034 5.38611 5.51242 5.51255 5.58885 5.70698 5.81417 5.96555 6.29038 6.36882 6.48628 7.14059 7.22097 7.88399 8.57408 9.30203 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.003228 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.093649 B = 8671.414866 C = 8903.947133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.229 4.229 8 H 0.068 0.932 9 N -0.612 5.612 10 C 0.184 3.816 11 C -0.138 4.138 12 C -0.110 4.110 13 C 0.137 3.863 14 H 0.083 0.917 15 C 0.149 3.851 16 H 0.049 0.951 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.123 4.123 20 C 0.077 3.923 21 N -0.590 5.590 22 C 0.554 3.446 23 O -0.540 6.540 24 C -0.193 4.193 25 C 0.006 3.994 26 C -0.179 4.179 27 C 0.310 3.690 28 F -0.112 7.112 29 N -0.533 5.533 30 C 0.161 3.839 31 H 0.245 0.755 32 H 0.026 0.974 33 H -0.003 1.003 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.115 0.885 46 H 0.167 0.833 47 H 0.186 0.814 48 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.708 -20.426 -8.552 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.796 3.204 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.209 1.209 7 C -0.359 4.359 8 H 0.086 0.914 9 N -0.337 5.337 10 C 0.058 3.942 11 C -0.177 4.177 12 C -0.147 4.147 13 C 0.031 3.969 14 H 0.100 0.900 15 C 0.044 3.956 16 H 0.067 0.933 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.161 4.161 20 C -0.044 4.044 21 N -0.322 5.322 22 C 0.343 3.657 23 O -0.420 6.420 24 C -0.199 4.199 25 C -0.020 4.020 26 C -0.200 4.200 27 C 0.157 3.843 28 F -0.091 7.091 29 N -0.248 5.248 30 C 0.004 3.996 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.015 0.985 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.120 0.880 44 H 0.106 0.894 45 H 0.132 0.868 46 H 0.184 0.816 47 H 0.204 0.796 48 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 8.173 -20.110 -8.584 23.343 hybrid contribution -0.378 1.478 0.631 1.651 sum 7.795 -18.632 -7.953 21.706 Atomic orbital electron populations 1.70139 1.06182 1.25098 1.58026 1.25596 0.96401 1.00575 1.02692 0.85317 0.77318 0.79603 0.78113 1.20192 1.22114 1.20869 1.19151 0.90340 0.83783 1.42616 0.91417 1.44907 1.06656 1.02736 1.79402 1.21099 0.85076 0.92083 0.95918 1.22879 0.99239 0.96729 0.98812 1.22764 0.95135 0.97611 0.99232 1.22326 0.96957 0.84258 0.93320 0.89978 1.21739 0.91173 0.84980 0.97717 0.93295 1.21905 0.97245 1.01260 0.95322 1.21529 1.00362 0.98322 0.95264 1.21944 0.96717 0.97072 1.00361 1.22816 0.97696 1.03537 0.80396 1.48180 1.50972 1.24081 1.08963 1.18331 0.79718 0.83053 0.84623 1.90723 1.54371 1.72489 1.24369 1.21030 1.01081 0.95734 1.02012 1.21771 0.96757 0.89252 0.94203 1.22045 0.95765 1.02396 0.99781 1.18651 0.89537 0.82822 0.93242 1.91642 1.75441 1.49089 1.92958 1.67063 1.30040 0.99631 1.28034 1.23287 0.88677 0.95446 0.92193 0.94548 0.95578 0.98530 0.92910 0.90453 0.90916 0.90471 0.90971 0.94016 0.91031 0.92407 0.91376 0.87960 0.89396 0.86788 0.81585 0.79622 0.78680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.43 10.59 21.65 0.23 -57.20 16 2 C -0.06 -3.41 5.47 84.86 0.46 -2.94 16 3 Si 0.97 46.47 29.55 68.60 2.03 48.49 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.23 -13.04 9.59 84.03 0.81 -12.23 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 9 N -0.61 -31.97 3.04 -668.26 -2.03 -34.00 16 10 C 0.18 9.42 5.40 86.86 0.47 9.89 16 11 C -0.14 -5.57 7.09 31.99 0.23 -5.35 16 12 C -0.11 -4.08 5.42 31.78 0.17 -3.91 16 13 C 0.14 5.82 2.29 45.34 0.10 5.93 16 14 H 0.08 3.92 5.09 -71.02 -0.36 3.56 16 15 C 0.15 5.33 2.76 44.97 0.12 5.46 16 16 H 0.05 2.04 7.67 -2.39 -0.02 2.02 16 17 C -0.12 -3.94 4.91 30.67 0.15 -3.79 16 18 C -0.12 -2.80 5.88 30.62 0.18 -2.62 16 19 C -0.12 -2.08 6.10 30.82 0.19 -1.89 16 20 C 0.08 1.36 5.01 86.51 0.43 1.80 16 21 N -0.59 -15.71 2.96 -797.72 -2.36 -18.07 16 22 C 0.55 15.17 6.99 86.75 0.61 15.78 16 23 O -0.54 -18.91 10.53 -3.93 -0.04 -18.95 16 24 C -0.19 -3.88 5.43 -20.00 -0.11 -3.99 16 25 C 0.01 0.10 9.77 22.72 0.22 0.32 16 26 C -0.18 -2.36 10.07 22.37 0.23 -2.13 16 27 C 0.31 5.46 8.41 84.77 0.71 6.17 16 28 F -0.11 -2.03 17.29 44.97 0.78 -1.25 16 29 N -0.53 -10.49 10.36 -195.74 -2.03 -12.51 16 30 C 0.16 2.86 8.56 85.02 0.73 3.58 16 31 H 0.25 14.57 8.31 -92.70 -0.77 13.79 16 32 H 0.03 1.51 6.96 -2.39 -0.02 1.49 16 33 H 0.00 -0.18 8.05 -2.39 -0.02 -0.20 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 36 H 0.07 2.51 4.84 -2.39 -0.01 2.49 16 37 H 0.08 2.70 6.38 -2.38 -0.02 2.68 16 38 H 0.07 2.29 5.35 -2.39 -0.01 2.28 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.11 1.57 3.79 -2.38 -0.01 1.56 16 46 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 47 H 0.19 1.23 8.06 -2.91 -0.02 1.20 16 48 H 0.20 2.74 5.76 -2.91 -0.02 2.72 16 Total: -1.00 -71.53 366.07 2.92 -68.61 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.64 Total: 14.82 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 5.70 Total: 10.06 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -6.19 Total: -121.79 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.04 Total: -18.95 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.25 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -71.53 2.92 -68.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025207002.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.198 kcal (2) G-P(sol) polarization free energy of solvation -71.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds