Wall clock time and date at job start Wed Apr 1 2020 04:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48497 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46977 * 300.00201 * 3 2 1 6 6 H 1.48499 * 109.47040 * 60.00284 * 3 2 1 7 7 C 1.38809 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00444 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00067 * 180.02562 * 9 7 2 11 11 H 1.08992 * 110.47091 * 32.36269 * 10 9 7 12 12 C 1.56003 * 110.52512 * 269.56761 * 10 9 7 13 13 C 1.56341 * 105.77135 * 248.33394 * 12 10 9 14 14 C 1.51558 * 101.81176 * 25.44118 * 13 12 10 15 15 H 1.09006 * 111.54475 * 71.63177 * 14 13 12 16 16 C 1.51526 * 123.34596 * 207.98012 * 14 13 12 17 17 N 1.49623 * 102.49670 * 151.63479 * 16 14 13 18 18 C 1.34773 * 126.06973 * 154.35079 * 17 16 14 19 19 O 1.21286 * 119.99746 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00408 * 359.97438 * 18 17 16 21 21 C 1.53001 * 109.47306 * 179.97438 * 20 18 17 22 22 C 1.50705 * 109.46866 * 180.02562 * 21 20 18 23 23 C 1.38226 * 120.40505 * 90.00400 * 22 21 20 24 24 N 1.31849 * 120.82203 * 179.97438 * 23 22 21 25 25 C 1.31865 * 121.74757 * 0.02562 * 24 23 22 26 26 C 1.38423 * 120.73128 * 359.97235 * 25 24 23 27 27 F 1.35098 * 120.44655 * 179.97438 * 26 25 24 28 28 C 1.38596 * 120.40319 * 269.72382 * 22 21 20 29 29 C 1.49285 * 107.85660 * 334.35150 * 17 16 14 30 30 C 1.49709 * 110.52163 * 155.00574 * 10 9 7 31 31 H 1.09004 * 107.87007 * 196.35199 * 30 10 9 32 32 H 0.97001 * 119.99923 * 359.97438 * 1 2 3 33 33 H 0.97006 * 120.00220 * 0.02562 * 9 7 2 34 34 H 1.08997 * 110.19097 * 7.41081 * 12 10 9 35 35 H 1.08997 * 110.18840 * 129.18611 * 12 10 9 36 36 H 1.09002 * 110.96059 * 267.31327 * 13 12 10 37 37 H 1.08996 * 110.95619 * 143.56742 * 13 12 10 38 38 H 1.09003 * 110.79888 * 269.88770 * 16 14 13 39 39 H 1.08999 * 110.80168 * 33.37884 * 16 14 13 40 40 H 1.08994 * 109.47274 * 299.99959 * 20 18 17 41 41 H 1.08999 * 109.46935 * 59.99752 * 20 18 17 42 42 H 1.08994 * 109.47300 * 300.00407 * 21 20 18 43 43 H 1.08999 * 109.46947 * 60.00223 * 21 20 18 44 44 H 1.08006 * 119.59073 * 359.97438 * 23 22 21 45 45 H 1.08003 * 119.63820 * 180.02562 * 25 24 23 46 46 H 1.07994 * 120.79879 * 359.97438 * 28 22 21 47 47 H 1.09003 * 110.39740 * 112.41319 * 29 17 16 48 48 H 1.08995 * 110.39872 * 234.69803 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9957 -3.5557 0.5460 12 6 2.3221 -4.1360 -1.4615 13 6 1.4445 -5.4154 -1.6541 14 6 0.3400 -5.1894 -0.6412 15 1 -0.3368 -4.3955 -0.9574 16 6 -0.4171 -6.3167 0.0311 17 7 -0.8095 -5.7076 1.3402 18 6 -1.8648 -6.0666 2.0978 19 8 -2.0811 -5.4956 3.1458 20 6 -2.7759 -7.1775 1.6430 21 6 -3.8844 -7.3836 2.6771 22 6 -4.7952 -8.4949 2.2225 23 6 -4.5363 -9.8037 2.5842 24 7 -5.3279 -10.7823 2.1915 25 6 -6.3903 -10.5575 1.4434 26 6 -6.7137 -9.2730 1.0418 27 9 -7.8033 -9.0494 0.2750 28 6 -5.9057 -8.2165 1.4414 29 6 0.1753 -4.6316 1.6580 30 6 1.2200 -4.7467 0.5919 31 1 1.8797 -5.5778 0.8415 32 1 -0.4850 0.8401 0.0004 33 1 0.3555 -2.3881 -0.0005 34 1 2.0226 -3.3642 -2.1705 35 1 3.3766 -4.3785 -1.5931 36 1 2.0113 -6.3162 -1.4185 37 1 1.0418 -5.4633 -2.6659 38 1 -1.2988 -6.5905 -0.5484 39 1 0.2302 -7.1802 0.1844 40 1 -3.2188 -6.9138 0.6827 41 1 -2.2018 -8.0981 1.5378 42 1 -3.4412 -7.6474 3.6373 43 1 -4.4585 -6.4631 2.7827 44 1 -3.6750 -10.0275 3.1961 45 1 -7.0156 -11.3848 1.1415 46 1 -6.1352 -7.2029 1.1479 47 1 -0.3040 -3.6535 1.6161 48 1 0.6142 -4.7968 2.6419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026436065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:22 Heat of formation + Delta-G solvation = -22.775128 kcal Electronic energy + Delta-G solvation = -29784.553656 eV Core-core repulsion = 25561.258967 eV Total energy + Delta-G solvation = -4223.294689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.37346 -40.72358 -40.41846 -38.73314 -35.29618 -34.91958 -33.33815 -32.10417 -30.91838 -30.70335 -29.21306 -28.48452 -25.90181 -25.17685 -24.15128 -23.40959 -22.95571 -21.84227 -20.07895 -19.09022 -18.82365 -17.82995 -17.74180 -17.47198 -17.25614 -16.64294 -16.26203 -16.15360 -15.64729 -14.84445 -14.66033 -14.39747 -14.35709 -14.11753 -13.92208 -13.76969 -13.59905 -13.49601 -13.15321 -12.82163 -12.69365 -12.60755 -12.50160 -12.15504 -11.88716 -11.47346 -11.36351 -11.25473 -10.99548 -10.85641 -10.72003 -10.49312 -10.31593 -10.21035 -10.08157 -10.05125 -9.81881 -9.64352 -9.59546 -9.28224 -8.94694 -8.54131 -7.00117 -5.79928 -3.09068 0.45100 0.62594 2.70310 2.90034 3.18568 3.41349 3.47183 3.49418 3.56039 3.97102 4.10638 4.22061 4.30039 4.44138 4.54227 4.56631 4.68911 4.76057 4.91781 4.97713 5.09872 5.23150 5.28686 5.30100 5.33268 5.37914 5.45760 5.46992 5.54224 5.60288 5.76227 5.79474 5.80852 5.83367 5.89541 5.97362 6.14241 6.17744 6.22735 6.25615 6.34310 6.41865 6.50637 6.62727 6.77985 7.01062 7.35912 7.59736 7.68626 8.22215 8.38218 9.49804 10.06050 10.40562 11.42426 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002051 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.935185 B =13651.411155 C =14205.157152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.195 3.805 11 H 0.057 0.943 12 C -0.145 4.145 13 C -0.098 4.098 14 C -0.125 4.125 15 H 0.093 0.907 16 C 0.117 3.883 17 N -0.623 5.623 18 C 0.526 3.474 19 O -0.542 6.542 20 C -0.130 4.130 21 C -0.064 4.064 22 C -0.099 4.099 23 C 0.092 3.908 24 N -0.455 5.455 25 C 0.066 3.934 26 C 0.051 3.949 27 F -0.130 7.130 28 C -0.107 4.107 29 C 0.132 3.868 30 C -0.120 4.120 31 H 0.067 0.933 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.165 0.835 45 H 0.166 0.834 46 H 0.150 0.850 47 H 0.084 0.916 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.902 -22.428 0.142 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.084 3.916 11 H 0.075 0.925 12 C -0.186 4.186 13 C -0.136 4.136 14 C -0.144 4.144 15 H 0.112 0.888 16 C -0.005 4.005 17 N -0.358 5.358 18 C 0.314 3.686 19 O -0.420 6.420 20 C -0.170 4.170 21 C -0.103 4.103 22 C -0.101 4.101 23 C -0.065 4.065 24 N -0.162 5.162 25 C -0.092 4.092 26 C 0.030 3.970 27 F -0.109 7.109 28 C -0.134 4.134 29 C 0.011 3.989 30 C -0.140 4.140 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.182 0.818 45 H 0.183 0.817 46 H 0.167 0.833 47 H 0.102 0.898 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.815 -22.851 1.012 24.172 hybrid contribution -0.284 1.871 -0.629 1.995 sum -8.100 -20.980 0.383 22.492 Atomic orbital electron populations 1.69664 1.05098 1.25596 1.57579 1.24744 0.95486 0.97706 1.02921 0.86146 0.78793 0.84243 0.77160 1.20564 1.21952 1.21891 1.19290 0.91040 0.84076 1.42738 0.91061 1.42436 1.05700 0.99590 1.88157 1.20052 0.94011 0.85298 0.92248 0.92514 1.23864 0.97970 0.96134 1.00668 1.21811 0.95596 0.98580 0.97628 1.22620 0.97280 0.98074 0.96475 0.88829 1.21788 0.99150 0.95848 0.83748 1.49876 1.27362 1.36718 1.21846 1.20152 0.80382 0.84291 0.83740 1.90731 1.72122 1.55595 1.23559 1.21618 0.96515 0.98355 1.00543 1.20346 0.94650 0.96388 0.98881 1.20902 0.95631 0.96633 0.96933 1.22851 0.98312 0.87742 0.97641 1.67757 1.03344 1.35709 1.09425 1.22912 0.95587 0.94691 0.96045 1.18837 0.86766 0.95513 0.95892 1.91539 1.51229 1.95434 1.72650 1.21680 0.94236 0.99923 0.97510 1.20941 0.89025 0.91278 0.97621 1.22054 0.96499 1.00875 0.94607 0.91437 0.93540 0.78145 0.90582 0.92834 0.91980 0.92072 0.90765 0.91094 0.88805 0.88777 0.89097 0.89280 0.81807 0.81662 0.83268 0.89789 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.39 9.96 -15.06 -0.15 -6.54 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.72 -16.81 4.85 -53.45 -0.26 -17.07 16 10 C 0.20 3.54 3.47 -67.95 -0.24 3.30 16 11 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 12 C -0.15 -2.27 6.74 -23.33 -0.16 -2.43 16 13 C -0.10 -1.20 6.61 -25.67 -0.17 -1.37 16 14 C -0.13 -1.66 3.07 -89.45 -0.27 -1.93 16 15 H 0.09 1.50 7.88 -51.93 -0.41 1.09 16 16 C 0.12 1.25 6.49 -3.05 -0.02 1.23 16 17 N -0.62 -8.54 3.43 -171.57 -0.59 -9.13 16 18 C 0.53 7.21 7.88 -10.99 -0.09 7.12 16 19 O -0.54 -9.62 16.35 5.55 0.09 -9.53 16 20 C -0.13 -1.15 4.74 -27.88 -0.13 -1.29 16 21 C -0.06 -0.54 4.66 -27.88 -0.13 -0.67 16 22 C -0.10 -0.76 5.15 -104.49 -0.54 -1.30 16 23 C 0.09 0.71 10.86 -17.55 -0.19 0.52 16 24 N -0.46 -4.10 10.36 -13.20 -0.14 -4.24 16 25 C 0.07 0.53 11.17 -17.47 -0.20 0.33 16 26 C 0.05 0.43 7.35 -39.28 -0.29 0.14 16 27 F -0.13 -1.17 17.28 2.25 0.04 -1.13 16 28 C -0.11 -0.85 9.85 -39.21 -0.39 -1.23 16 29 C 0.13 2.17 6.67 -4.12 -0.03 2.14 16 30 C -0.12 -1.81 2.25 -91.23 -0.21 -2.02 16 31 H 0.07 0.90 7.99 -51.93 -0.41 0.49 16 32 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.38 9.69 6.73 -40.82 -0.27 9.41 16 34 H 0.08 1.39 7.98 -51.93 -0.41 0.98 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.66 7.58 -51.93 -0.39 0.27 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.74 7.91 -51.93 -0.41 0.33 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 43 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 44 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 45 H 0.17 0.93 8.06 -52.48 -0.42 0.51 16 46 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.08 1.68 7.22 -51.93 -0.37 1.30 16 48 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -32.10 395.24 -9.78 -41.88 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.30 Total: 7.54 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -3.28 Total: -4.43 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.26 Total: -57.31 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.10 -9.78 -41.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026436065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.108 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds