Wall clock time and date at job start Wed Apr 1 2020 04:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48497 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46977 * 300.00201 * 3 2 1 6 6 H 1.48499 * 109.47040 * 60.00284 * 3 2 1 7 7 C 1.38809 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00444 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00067 * 180.02562 * 9 7 2 11 11 H 1.08992 * 110.47091 * 32.36269 * 10 9 7 12 12 C 1.56003 * 110.52512 * 269.56761 * 10 9 7 13 13 C 1.56341 * 105.77135 * 248.33394 * 12 10 9 14 14 C 1.51558 * 101.81176 * 25.44118 * 13 12 10 15 15 H 1.09006 * 111.54475 * 71.63177 * 14 13 12 16 16 C 1.51526 * 123.34596 * 207.98012 * 14 13 12 17 17 N 1.49623 * 102.49670 * 151.63479 * 16 14 13 18 18 C 1.34773 * 126.06973 * 154.35079 * 17 16 14 19 19 O 1.21286 * 119.99746 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00408 * 359.97438 * 18 17 16 21 21 C 1.53001 * 109.47306 * 179.97438 * 20 18 17 22 22 C 1.50705 * 109.46866 * 180.02562 * 21 20 18 23 23 C 1.38226 * 120.40505 * 90.00400 * 22 21 20 24 24 N 1.31849 * 120.82203 * 179.97438 * 23 22 21 25 25 C 1.31865 * 121.74757 * 0.02562 * 24 23 22 26 26 C 1.38423 * 120.73128 * 359.97235 * 25 24 23 27 27 F 1.35098 * 120.44655 * 179.97438 * 26 25 24 28 28 C 1.38596 * 120.40319 * 269.72382 * 22 21 20 29 29 C 1.49285 * 107.85660 * 334.35150 * 17 16 14 30 30 C 1.49709 * 110.52163 * 155.00574 * 10 9 7 31 31 H 1.09004 * 107.87007 * 196.35199 * 30 10 9 32 32 H 0.97001 * 119.99923 * 359.97438 * 1 2 3 33 33 H 0.97006 * 120.00220 * 0.02562 * 9 7 2 34 34 H 1.08997 * 110.19097 * 7.41081 * 12 10 9 35 35 H 1.08997 * 110.18840 * 129.18611 * 12 10 9 36 36 H 1.09002 * 110.96059 * 267.31327 * 13 12 10 37 37 H 1.08996 * 110.95619 * 143.56742 * 13 12 10 38 38 H 1.09003 * 110.79888 * 269.88770 * 16 14 13 39 39 H 1.08999 * 110.80168 * 33.37884 * 16 14 13 40 40 H 1.08994 * 109.47274 * 299.99959 * 20 18 17 41 41 H 1.08999 * 109.46935 * 59.99752 * 20 18 17 42 42 H 1.08994 * 109.47300 * 300.00407 * 21 20 18 43 43 H 1.08999 * 109.46947 * 60.00223 * 21 20 18 44 44 H 1.08006 * 119.59073 * 359.97438 * 23 22 21 45 45 H 1.08003 * 119.63820 * 180.02562 * 25 24 23 46 46 H 1.07994 * 120.79879 * 359.97438 * 28 22 21 47 47 H 1.09003 * 110.39740 * 112.41319 * 29 17 16 48 48 H 1.08995 * 110.39872 * 234.69803 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9957 -3.5557 0.5460 12 6 2.3221 -4.1360 -1.4615 13 6 1.4445 -5.4154 -1.6541 14 6 0.3400 -5.1894 -0.6412 15 1 -0.3368 -4.3955 -0.9574 16 6 -0.4171 -6.3167 0.0311 17 7 -0.8095 -5.7076 1.3402 18 6 -1.8648 -6.0666 2.0978 19 8 -2.0811 -5.4956 3.1458 20 6 -2.7759 -7.1775 1.6430 21 6 -3.8844 -7.3836 2.6771 22 6 -4.7952 -8.4949 2.2225 23 6 -4.5363 -9.8037 2.5842 24 7 -5.3279 -10.7823 2.1915 25 6 -6.3903 -10.5575 1.4434 26 6 -6.7137 -9.2730 1.0418 27 9 -7.8033 -9.0494 0.2750 28 6 -5.9057 -8.2165 1.4414 29 6 0.1753 -4.6316 1.6580 30 6 1.2200 -4.7467 0.5919 31 1 1.8797 -5.5778 0.8415 32 1 -0.4850 0.8401 0.0004 33 1 0.3555 -2.3881 -0.0005 34 1 2.0226 -3.3642 -2.1705 35 1 3.3766 -4.3785 -1.5931 36 1 2.0113 -6.3162 -1.4185 37 1 1.0418 -5.4633 -2.6659 38 1 -1.2988 -6.5905 -0.5484 39 1 0.2302 -7.1802 0.1844 40 1 -3.2188 -6.9138 0.6827 41 1 -2.2018 -8.0981 1.5378 42 1 -3.4412 -7.6474 3.6373 43 1 -4.4585 -6.4631 2.7827 44 1 -3.6750 -10.0275 3.1961 45 1 -7.0156 -11.3848 1.1415 46 1 -6.1352 -7.2029 1.1479 47 1 -0.3040 -3.6535 1.6161 48 1 0.6142 -4.7968 2.6419 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026436065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:21 Heat of formation + Delta-G solvation = -42.171433 kcal Electronic energy + Delta-G solvation = -29785.394742 eV Core-core repulsion = 25561.258967 eV Total energy + Delta-G solvation = -4224.135776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.01391 -41.73798 -41.16975 -39.87445 -36.67826 -35.66226 -35.02881 -32.74923 -32.57729 -31.60836 -30.27794 -29.78537 -27.13684 -26.15745 -25.15758 -24.75840 -24.08044 -22.57511 -21.15797 -20.25591 -20.07702 -19.38223 -18.46906 -18.36630 -17.89704 -17.58675 -17.42364 -16.84421 -16.76486 -16.44519 -15.85986 -15.72614 -15.46025 -15.10172 -14.90566 -14.70289 -14.54765 -14.44174 -14.16059 -13.96875 -13.75599 -13.58532 -13.28418 -13.22318 -13.03865 -12.97015 -12.86871 -12.60094 -12.31076 -12.18590 -12.06421 -12.01323 -11.84619 -11.48809 -11.37807 -11.03375 -10.92193 -10.87665 -10.70572 -10.62732 -9.89848 -9.69078 -8.97410 -7.93694 -5.20684 -0.13533 0.02560 1.45666 1.46389 1.55952 1.65279 1.87785 2.56167 2.57647 2.95547 3.04034 3.36087 3.40856 3.52784 3.71923 3.75319 3.78191 3.87007 3.98062 4.05031 4.08413 4.13353 4.21432 4.34587 4.37236 4.48893 4.52981 4.57304 4.66411 4.69342 4.72888 4.75347 4.81370 4.88605 4.89066 4.98292 5.06797 5.09737 5.16668 5.18985 5.24603 5.25804 5.41770 5.46084 5.55204 5.59962 5.70053 6.29080 6.55765 6.77753 7.15680 7.34871 8.13466 8.34429 9.29969 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002051 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.935185 B =13651.411155 C =14205.157152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.299 1.299 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.730 5.730 10 C 0.181 3.819 11 H 0.050 0.950 12 C -0.140 4.140 13 C -0.082 4.082 14 C -0.114 4.114 15 H 0.055 0.945 16 C 0.122 3.878 17 N -0.624 5.624 18 C 0.518 3.482 19 O -0.594 6.594 20 C -0.117 4.117 21 C -0.058 4.058 22 C -0.096 4.096 23 C 0.094 3.906 24 N -0.474 5.474 25 C 0.066 3.934 26 C 0.040 3.960 27 F -0.137 7.137 28 C -0.110 4.110 29 C 0.136 3.864 30 C -0.123 4.123 31 H 0.100 0.900 32 H 0.248 0.752 33 H 0.371 0.629 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.185 0.815 45 H 0.185 0.815 46 H 0.156 0.844 47 H 0.033 0.967 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 -25.795 -0.925 26.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.227 1.227 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.370 5.370 10 C 0.072 3.928 11 H 0.068 0.932 12 C -0.180 4.180 13 C -0.120 4.120 14 C -0.133 4.133 15 H 0.074 0.926 16 C 0.002 3.998 17 N -0.358 5.358 18 C 0.309 3.691 19 O -0.475 6.475 20 C -0.157 4.157 21 C -0.096 4.096 22 C -0.098 4.098 23 C -0.063 4.063 24 N -0.182 5.182 25 C -0.091 4.091 26 C 0.019 3.981 27 F -0.115 7.115 28 C -0.136 4.136 29 C 0.013 3.987 30 C -0.142 4.142 31 H 0.119 0.881 32 H 0.056 0.944 33 H 0.203 0.797 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.144 0.856 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.202 0.798 45 H 0.202 0.798 46 H 0.174 0.826 47 H 0.051 0.949 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.661 -26.283 -0.092 27.115 hybrid contribution -0.589 2.890 -0.254 2.960 sum -7.250 -23.394 -0.347 24.494 Atomic orbital electron populations 1.69829 1.06622 1.25647 1.60213 1.25512 0.96268 1.00987 1.04423 0.85142 0.78428 0.80296 0.76352 1.18809 1.22326 1.22659 1.19691 0.91455 0.85306 1.39851 0.90464 1.42618 1.05272 1.00853 1.88255 1.20400 0.93820 0.84135 0.94422 0.93177 1.23661 1.00022 0.97114 0.97228 1.21760 0.94460 0.97801 0.97983 1.22559 0.96812 0.98175 0.95791 0.92631 1.22030 1.00662 0.95336 0.81783 1.49981 1.26879 1.35917 1.23070 1.21116 0.80307 0.84725 0.82955 1.90708 1.73246 1.57553 1.25961 1.21638 0.95736 0.97409 1.00896 1.20226 0.94514 0.95972 0.98911 1.20736 0.95500 0.96355 0.97167 1.23187 0.98554 0.87432 0.97137 1.67827 1.03960 1.36222 1.10166 1.23224 0.95443 0.95146 0.95334 1.18925 0.86895 0.95893 0.96430 1.91522 1.51596 1.95492 1.72917 1.21839 0.94194 1.00303 0.97262 1.20663 0.89827 0.90165 0.98013 1.21907 0.96744 1.00422 0.95159 0.88145 0.94362 0.79691 0.93929 0.90835 0.88292 0.90776 0.87982 0.87470 0.87171 0.85567 0.89226 0.90859 0.79825 0.79843 0.82609 0.94878 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 3 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 7 C -0.23 -12.60 9.96 84.03 0.84 -11.76 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.73 -35.52 4.85 -323.01 -1.57 -37.08 16 10 C 0.18 6.54 3.47 44.98 0.16 6.69 16 11 H 0.05 1.85 8.09 -2.39 -0.02 1.83 16 12 C -0.14 -4.14 6.74 32.80 0.22 -3.92 16 13 C -0.08 -1.69 6.61 31.28 0.21 -1.49 16 14 C -0.11 -2.76 3.07 -10.04 -0.03 -2.80 16 15 H 0.06 1.79 7.88 -2.38 -0.02 1.77 16 16 C 0.12 2.13 6.49 85.29 0.55 2.69 16 17 N -0.62 -16.31 3.43 -815.11 -2.79 -19.10 16 18 C 0.52 13.73 7.88 87.66 0.69 14.42 16 19 O -0.59 -21.63 16.35 -3.05 -0.05 -21.68 16 20 C -0.12 -1.75 4.74 29.85 0.14 -1.61 16 21 C -0.06 -0.88 4.66 29.85 0.14 -0.74 16 22 C -0.10 -1.28 5.15 -19.78 -0.10 -1.38 16 23 C 0.09 1.22 10.86 84.69 0.92 2.14 16 24 N -0.47 -7.50 10.36 -195.66 -2.03 -9.53 16 25 C 0.07 0.94 11.17 84.73 0.95 1.88 16 26 C 0.04 0.61 7.35 22.47 0.17 0.77 16 27 F -0.14 -2.32 17.28 44.97 0.78 -1.54 16 28 C -0.11 -1.56 9.85 22.51 0.22 -1.34 16 29 C 0.14 4.56 6.67 84.78 0.57 5.12 16 30 C -0.12 -3.55 2.25 -11.19 -0.03 -3.58 16 31 H 0.10 2.32 7.99 -2.39 -0.02 2.30 16 32 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.37 19.87 6.73 -92.70 -0.62 19.25 16 34 H 0.04 1.55 7.98 -2.39 -0.02 1.53 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.30 7.58 -2.39 -0.02 1.28 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.11 1.35 7.91 -2.39 -0.02 1.33 16 41 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 43 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 44 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 45 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 46 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 47 H 0.03 1.43 7.22 -2.39 -0.02 1.41 16 48 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -75.22 395.24 3.07 -72.14 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.35 Total: 27.24 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 6.07 Total: 0.96 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -6.10 Total: -125.72 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.05 Total: -21.68 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -75.22 3.07 -72.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026436065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.973 kcal (2) G-P(sol) polarization free energy of solvation -75.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds