Wall clock time and date at job start Wed Apr 1 2020 04:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48503 * 109.47045 * 240.00044 * 3 2 1 5 5 H 1.48492 * 109.47292 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46810 * 120.00432 * 3 2 1 7 7 C 1.38806 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99803 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00234 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00103 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.50870 * 32.46929 * 10 9 7 12 12 C 1.56516 * 112.13596 * 269.94142 * 10 9 7 13 13 C 1.54836 * 103.25802 * 203.62702 * 12 10 9 14 14 C 1.54149 * 104.34597 * 37.79246 * 13 12 10 15 15 H 1.08995 * 112.65556 * 99.32540 * 14 13 12 16 16 C 1.54463 * 108.79369 * 224.04555 * 14 13 12 17 17 N 1.48344 * 104.30578 * 138.54631 * 16 14 13 18 18 C 1.34769 * 128.19743 * 138.21011 * 17 16 14 19 19 O 1.21286 * 120.00135 * 180.02562 * 18 17 16 20 20 C 1.50698 * 120.00218 * 0.02628 * 18 17 16 21 21 C 1.53002 * 109.47404 * 179.97438 * 20 18 17 22 22 C 1.50698 * 109.47044 * 179.97438 * 21 20 18 23 23 C 1.38236 * 120.40627 * 269.72810 * 22 21 20 24 24 N 1.31857 * 120.81740 * 179.72746 * 23 22 21 25 25 C 1.31873 * 121.74969 * 0.53697 * 24 23 22 26 26 C 1.38425 * 120.72792 * 359.75291 * 25 24 23 27 27 F 1.35095 * 120.44030 * 180.02562 * 26 25 24 28 28 C 1.38596 * 120.40300 * 90.00499 * 22 21 20 29 29 C 1.48339 * 103.60638 * 318.23075 * 17 16 14 30 30 C 1.54150 * 110.45600 * 155.00329 * 10 9 7 31 31 H 1.09002 * 111.89772 * 19.86119 * 30 10 9 32 32 H 0.97005 * 120.00166 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00232 * 0.02562 * 9 7 2 34 34 H 1.09003 * 110.88438 * 84.96808 * 12 10 9 35 35 H 1.09006 * 110.30130 * 322.01017 * 12 10 9 36 36 H 1.09001 * 110.45537 * 279.07858 * 13 12 10 37 37 H 1.08999 * 110.46051 * 156.51235 * 13 12 10 38 38 H 1.08995 * 110.46658 * 19.84019 * 16 14 13 39 39 H 1.09003 * 110.46883 * 257.24752 * 16 14 13 40 40 H 1.08998 * 109.47568 * 300.00083 * 20 18 17 41 41 H 1.09006 * 109.47047 * 59.99696 * 20 18 17 42 42 H 1.08993 * 109.47433 * 300.00363 * 21 20 18 43 43 H 1.09003 * 109.46699 * 60.00747 * 21 20 18 44 44 H 1.07990 * 119.59307 * 359.97398 * 23 22 21 45 45 H 1.07997 * 119.63220 * 179.72559 * 25 24 23 46 46 H 1.07990 * 120.79916 * 0.02562 * 28 22 21 47 47 H 1.08993 * 110.46902 * 283.05978 * 29 17 16 48 48 H 1.09006 * 110.57648 * 160.52255 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9953 -3.5571 0.5457 12 6 2.3505 -4.1676 -1.4519 13 6 2.5341 -5.6931 -1.2608 14 6 1.4896 -6.0727 -0.1925 15 1 0.5849 -6.5014 -0.6236 16 6 2.1477 -7.0239 0.8311 17 7 1.6415 -6.5558 2.1446 18 6 1.2236 -7.2978 3.1892 19 8 0.8353 -6.7549 4.2019 20 6 1.2387 -8.8020 3.0990 21 6 0.7196 -9.3968 4.4095 22 6 0.7342 -10.9010 4.3190 23 6 -0.3718 -11.5844 3.8492 24 7 -0.3659 -12.9001 3.7616 25 6 0.6810 -13.6150 4.1246 26 6 1.8227 -13.0012 4.6102 27 9 2.8921 -13.7393 4.9799 28 6 1.8545 -11.6164 4.7112 29 6 1.7037 -5.0777 2.0360 30 6 1.1942 -4.7781 0.6088 31 1 0.1340 -4.5251 0.5997 32 1 -0.4850 0.8401 0.0004 33 1 0.3555 -2.3881 -0.0005 34 1 3.2603 -3.7156 -1.8471 35 1 1.5025 -3.9594 -2.1045 36 1 3.5405 -5.9141 -0.9050 37 1 2.3343 -6.2208 -2.1934 38 1 3.2334 -6.9375 0.7884 39 1 1.8388 -8.0531 0.6485 40 1 0.6005 -9.1231 2.2758 41 1 2.2583 -9.1452 2.9233 42 1 1.3581 -9.0758 5.2324 43 1 -0.3000 -9.0537 4.5855 44 1 -1.2500 -11.0337 3.5465 45 1 0.6470 -14.6914 4.0425 46 1 2.7310 -11.1094 5.0866 47 1 2.7296 -4.7296 2.1553 48 1 1.0552 -4.6114 2.7778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026436067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:28 Heat of formation + Delta-G solvation = -38.860879 kcal Electronic energy + Delta-G solvation = -29447.919805 eV Core-core repulsion = 25223.927586 eV Total energy + Delta-G solvation = -4223.992219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.44607 -40.73765 -40.23668 -38.56915 -35.20824 -34.99234 -33.38545 -32.16994 -31.05948 -30.73341 -29.21859 -28.42146 -25.90759 -24.94368 -24.23370 -23.57331 -22.88453 -21.95308 -20.26964 -19.14670 -18.91311 -17.92221 -17.81405 -17.40205 -17.17325 -16.89466 -16.29065 -16.03443 -15.74219 -15.39104 -14.65936 -14.38286 -14.34491 -14.11185 -13.97349 -13.64824 -13.59745 -13.44381 -13.08518 -13.04648 -12.71507 -12.63437 -12.45477 -12.26256 -11.78895 -11.69940 -11.46429 -11.20594 -10.92444 -10.80439 -10.72176 -10.42275 -10.31159 -10.26038 -10.25012 -10.10618 -10.00747 -9.82668 -9.68824 -9.35449 -8.90138 -8.72198 -6.98886 -5.80001 -3.09204 0.38804 0.55822 2.56979 2.86537 3.12977 3.42025 3.46746 3.47655 3.49369 3.91666 4.08168 4.22249 4.37017 4.39117 4.53289 4.58758 4.60566 4.64841 4.79387 4.84827 4.95931 5.11030 5.20784 5.26787 5.29710 5.37906 5.38615 5.41372 5.52303 5.57624 5.69399 5.71744 5.74067 5.81979 5.89056 5.90420 6.01580 6.11345 6.14024 6.21882 6.28398 6.36190 6.49856 6.62100 6.75084 6.98450 7.30635 7.56636 7.66900 8.10413 8.38450 9.49496 10.06688 10.40435 11.42280 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.023188 B = 0.001801 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.206413 B =15539.333700 C =15928.157627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.717 5.717 10 C 0.186 3.814 11 H 0.056 0.944 12 C -0.147 4.147 13 C -0.114 4.114 14 C -0.101 4.101 15 H 0.085 0.915 16 C 0.104 3.896 17 N -0.625 5.625 18 C 0.531 3.469 19 O -0.543 6.543 20 C -0.131 4.131 21 C -0.064 4.064 22 C -0.100 4.100 23 C 0.093 3.907 24 N -0.454 5.454 25 C 0.067 3.933 26 C 0.051 3.949 27 F -0.130 7.130 28 C -0.107 4.107 29 C 0.114 3.886 30 C -0.108 4.108 31 H 0.087 0.913 32 H 0.256 0.744 33 H 0.385 0.615 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.166 0.834 45 H 0.167 0.833 46 H 0.149 0.851 47 H 0.075 0.925 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.855 -27.136 4.743 27.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.356 5.356 10 C 0.074 3.926 11 H 0.074 0.926 12 C -0.188 4.188 13 C -0.153 4.153 14 C -0.121 4.121 15 H 0.103 0.897 16 C -0.019 4.019 17 N -0.358 5.358 18 C 0.320 3.680 19 O -0.421 6.421 20 C -0.171 4.171 21 C -0.102 4.102 22 C -0.102 4.102 23 C -0.064 4.064 24 N -0.161 5.161 25 C -0.091 4.091 26 C 0.029 3.971 27 F -0.109 7.109 28 C -0.134 4.134 29 C -0.008 4.008 30 C -0.128 4.128 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.219 0.781 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.183 0.817 45 H 0.184 0.816 46 H 0.166 0.834 47 H 0.093 0.907 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.010 -27.200 5.118 27.840 hybrid contribution 1.197 1.197 0.196 1.704 sum 4.207 -26.002 5.314 26.871 Atomic orbital electron populations 1.69648 1.05111 1.25860 1.57319 1.24751 0.95509 0.97741 1.02803 0.86278 0.78546 0.83569 0.77840 1.21273 1.21701 1.21236 1.19185 0.90958 0.84084 1.43124 0.91204 1.42392 1.05717 0.99672 1.87853 1.21341 0.93633 0.85111 0.92482 0.92636 1.23511 1.01358 0.92864 1.01083 1.22353 0.97584 0.97791 0.97534 1.22719 0.98705 0.95327 0.95345 0.89689 1.22765 0.98681 0.98411 0.82057 1.49276 1.63516 1.08471 1.14573 1.20133 0.76990 0.88914 0.81959 1.90734 1.47644 1.73891 1.29796 1.21617 1.03871 0.92082 0.99501 1.20341 1.04518 0.87749 0.97629 1.20893 0.93692 0.97606 0.98016 1.22884 0.98001 0.89776 0.95754 1.67776 1.26603 1.08022 1.13745 1.22934 0.87883 1.01357 0.96957 1.18835 0.86131 0.90072 1.02054 1.91537 1.53641 1.76563 1.89143 1.21646 1.00035 0.92088 0.99618 1.22630 1.01706 0.78584 0.97901 1.23076 1.01435 0.95036 0.93258 0.89439 0.93406 0.78135 0.92285 0.91738 0.91747 0.92193 0.90577 0.90800 0.88614 0.88876 0.89373 0.88996 0.81728 0.81627 0.83373 0.90723 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.51 9.96 -15.06 -0.15 -6.66 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.13 5.29 -51.02 -0.27 -17.40 16 10 C 0.19 3.38 3.10 -65.43 -0.20 3.18 16 11 H 0.06 1.03 7.15 -51.93 -0.37 0.66 16 12 C -0.15 -2.34 6.68 -23.87 -0.16 -2.50 16 13 C -0.11 -1.32 6.38 -25.16 -0.16 -1.48 16 14 C -0.10 -1.16 3.95 -88.15 -0.35 -1.51 16 15 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.10 0.99 6.46 -2.26 -0.01 0.97 16 17 N -0.62 -7.70 3.31 -168.89 -0.56 -8.26 16 18 C 0.53 6.58 7.92 -10.99 -0.09 6.49 16 19 O -0.54 -8.92 16.27 5.55 0.09 -8.83 16 20 C -0.13 -1.01 4.67 -27.88 -0.13 -1.14 16 21 C -0.06 -0.47 4.66 -27.88 -0.13 -0.60 16 22 C -0.10 -0.69 5.15 -104.49 -0.54 -1.22 16 23 C 0.09 0.68 10.86 -17.54 -0.19 0.49 16 24 N -0.45 -3.88 10.36 -13.20 -0.14 -4.02 16 25 C 0.07 0.49 11.17 -17.47 -0.20 0.30 16 26 C 0.05 0.38 7.35 -39.27 -0.29 0.09 16 27 F -0.13 -1.05 17.28 2.25 0.04 -1.01 16 28 C -0.11 -0.73 9.85 -39.21 -0.39 -1.12 16 29 C 0.11 1.69 6.57 -2.26 -0.01 1.68 16 30 C -0.11 -1.63 3.59 -88.14 -0.32 -1.95 16 31 H 0.09 1.48 7.80 -51.93 -0.40 1.07 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.38 9.87 7.60 -40.82 -0.31 9.56 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.66 7.18 -51.93 -0.37 0.29 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.67 7.20 -51.93 -0.37 0.29 16 39 H 0.07 0.52 7.32 -51.93 -0.38 0.14 16 40 H 0.10 0.61 7.98 -51.93 -0.41 0.19 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.70 8.05 -51.93 -0.42 0.29 16 43 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 44 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.07 1.11 7.22 -51.93 -0.37 0.73 16 48 H 0.08 1.42 7.88 -51.93 -0.41 1.01 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -32.40 394.73 -9.77 -42.17 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.18 Total: 6.70 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -3.41 Total: -5.40 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.24 Total: -56.62 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.04 Total: -1.01 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.40 -9.77 -42.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026436067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.309 kcal (2) G-P(sol) polarization free energy of solvation -32.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds