Wall clock time and date at job start Wed Apr 1 2020 04:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48503 * 109.47045 * 240.00044 * 3 2 1 5 5 H 1.48492 * 109.47292 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46810 * 120.00432 * 3 2 1 7 7 C 1.38806 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99803 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00234 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00103 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.50870 * 32.46929 * 10 9 7 12 12 C 1.56516 * 112.13596 * 269.94142 * 10 9 7 13 13 C 1.54836 * 103.25802 * 203.62702 * 12 10 9 14 14 C 1.54149 * 104.34597 * 37.79246 * 13 12 10 15 15 H 1.08995 * 112.65556 * 99.32540 * 14 13 12 16 16 C 1.54463 * 108.79369 * 224.04555 * 14 13 12 17 17 N 1.48344 * 104.30578 * 138.54631 * 16 14 13 18 18 C 1.34769 * 128.19743 * 138.21011 * 17 16 14 19 19 O 1.21286 * 120.00135 * 180.02562 * 18 17 16 20 20 C 1.50698 * 120.00218 * 0.02628 * 18 17 16 21 21 C 1.53002 * 109.47404 * 179.97438 * 20 18 17 22 22 C 1.50698 * 109.47044 * 179.97438 * 21 20 18 23 23 C 1.38236 * 120.40627 * 269.72810 * 22 21 20 24 24 N 1.31857 * 120.81740 * 179.72746 * 23 22 21 25 25 C 1.31873 * 121.74969 * 0.53697 * 24 23 22 26 26 C 1.38425 * 120.72792 * 359.75291 * 25 24 23 27 27 F 1.35095 * 120.44030 * 180.02562 * 26 25 24 28 28 C 1.38596 * 120.40300 * 90.00499 * 22 21 20 29 29 C 1.48339 * 103.60638 * 318.23075 * 17 16 14 30 30 C 1.54150 * 110.45600 * 155.00329 * 10 9 7 31 31 H 1.09002 * 111.89772 * 19.86119 * 30 10 9 32 32 H 0.97005 * 120.00166 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00232 * 0.02562 * 9 7 2 34 34 H 1.09003 * 110.88438 * 84.96808 * 12 10 9 35 35 H 1.09006 * 110.30130 * 322.01017 * 12 10 9 36 36 H 1.09001 * 110.45537 * 279.07858 * 13 12 10 37 37 H 1.08999 * 110.46051 * 156.51235 * 13 12 10 38 38 H 1.08995 * 110.46658 * 19.84019 * 16 14 13 39 39 H 1.09003 * 110.46883 * 257.24752 * 16 14 13 40 40 H 1.08998 * 109.47568 * 300.00083 * 20 18 17 41 41 H 1.09006 * 109.47047 * 59.99696 * 20 18 17 42 42 H 1.08993 * 109.47433 * 300.00363 * 21 20 18 43 43 H 1.09003 * 109.46699 * 60.00747 * 21 20 18 44 44 H 1.07990 * 119.59307 * 359.97398 * 23 22 21 45 45 H 1.07997 * 119.63220 * 179.72559 * 25 24 23 46 46 H 1.07990 * 120.79916 * 0.02562 * 28 22 21 47 47 H 1.08993 * 110.46902 * 283.05978 * 29 17 16 48 48 H 1.09006 * 110.57648 * 160.52255 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9953 -3.5571 0.5457 12 6 2.3505 -4.1676 -1.4519 13 6 2.5341 -5.6931 -1.2608 14 6 1.4896 -6.0727 -0.1925 15 1 0.5849 -6.5014 -0.6236 16 6 2.1477 -7.0239 0.8311 17 7 1.6415 -6.5558 2.1446 18 6 1.2236 -7.2978 3.1892 19 8 0.8353 -6.7549 4.2019 20 6 1.2387 -8.8020 3.0990 21 6 0.7196 -9.3968 4.4095 22 6 0.7342 -10.9010 4.3190 23 6 -0.3718 -11.5844 3.8492 24 7 -0.3659 -12.9001 3.7616 25 6 0.6810 -13.6150 4.1246 26 6 1.8227 -13.0012 4.6102 27 9 2.8921 -13.7393 4.9799 28 6 1.8545 -11.6164 4.7112 29 6 1.7037 -5.0777 2.0360 30 6 1.1942 -4.7781 0.6088 31 1 0.1340 -4.5251 0.5997 32 1 -0.4850 0.8401 0.0004 33 1 0.3555 -2.3881 -0.0005 34 1 3.2603 -3.7156 -1.8471 35 1 1.5025 -3.9594 -2.1045 36 1 3.5405 -5.9141 -0.9050 37 1 2.3343 -6.2208 -2.1934 38 1 3.2334 -6.9375 0.7884 39 1 1.8388 -8.0531 0.6485 40 1 0.6005 -9.1231 2.2758 41 1 2.2583 -9.1452 2.9233 42 1 1.3581 -9.0758 5.2324 43 1 -0.3000 -9.0537 4.5855 44 1 -1.2500 -11.0337 3.5465 45 1 0.6470 -14.6914 4.0425 46 1 2.7310 -11.1094 5.0866 47 1 2.7296 -4.7296 2.1553 48 1 1.0552 -4.6114 2.7778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026436067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:27 Heat of formation + Delta-G solvation = -58.423516 kcal Electronic energy + Delta-G solvation = -29448.768105 eV Core-core repulsion = 25223.927586 eV Total energy + Delta-G solvation = -4224.840519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.00498 -41.48097 -41.08039 -39.65550 -36.61100 -35.66259 -34.96525 -32.73998 -32.70163 -31.54553 -30.30328 -29.65501 -26.92349 -26.20475 -24.80449 -24.69313 -24.29990 -22.58633 -21.52790 -20.31855 -19.94425 -19.05144 -18.52695 -18.36959 -17.99802 -17.71693 -17.17713 -16.87480 -16.73064 -16.61035 -15.94363 -15.77405 -15.14485 -15.00717 -14.85751 -14.61786 -14.53843 -14.38317 -14.22117 -14.02267 -13.64203 -13.58521 -13.35084 -13.19168 -13.03523 -12.91790 -12.77841 -12.58114 -12.35763 -12.10538 -12.04897 -11.93828 -11.68935 -11.51305 -11.42493 -11.37840 -10.99216 -10.84227 -10.69854 -10.61680 -9.89796 -9.75384 -8.96599 -7.93977 -5.21828 -0.13356 0.03823 1.46472 1.49187 1.55106 1.63447 1.95463 2.56263 2.58117 2.96416 3.29866 3.39146 3.48102 3.54530 3.65412 3.74290 3.79620 3.84472 3.91148 4.05949 4.09272 4.13187 4.26269 4.34771 4.41757 4.50082 4.52872 4.57755 4.64238 4.67790 4.68900 4.76471 4.81489 4.85961 4.89884 4.94474 5.07664 5.11053 5.14746 5.19689 5.21670 5.30443 5.43734 5.48836 5.54520 5.60674 5.63423 6.28605 6.63549 6.78676 7.15005 7.33929 8.12319 8.33167 9.29354 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.023188 B = 0.001801 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.206413 B =15539.333700 C =15928.157627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.733 5.733 10 C 0.174 3.826 11 H 0.052 0.948 12 C -0.143 4.143 13 C -0.099 4.099 14 C -0.093 4.093 15 H 0.098 0.902 16 C 0.107 3.893 17 N -0.625 5.625 18 C 0.525 3.475 19 O -0.594 6.594 20 C -0.118 4.118 21 C -0.058 4.058 22 C -0.095 4.095 23 C 0.090 3.910 24 N -0.477 5.477 25 C 0.065 3.935 26 C 0.041 3.959 27 F -0.136 7.136 28 C -0.105 4.105 29 C 0.117 3.883 30 C -0.103 4.103 31 H 0.062 0.938 32 H 0.249 0.751 33 H 0.371 0.629 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.180 0.820 45 H 0.183 0.817 46 H 0.162 0.838 47 H 0.074 0.926 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 -30.013 3.754 30.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.371 5.371 10 C 0.065 3.935 11 H 0.070 0.930 12 C -0.183 4.183 13 C -0.137 4.137 14 C -0.112 4.112 15 H 0.116 0.884 16 C -0.014 4.014 17 N -0.357 5.357 18 C 0.316 3.684 19 O -0.475 6.475 20 C -0.158 4.158 21 C -0.096 4.096 22 C -0.097 4.097 23 C -0.067 4.067 24 N -0.184 5.184 25 C -0.093 4.093 26 C 0.020 3.980 27 F -0.114 7.114 28 C -0.132 4.132 29 C -0.007 4.007 30 C -0.124 4.124 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.202 0.798 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.197 0.803 45 H 0.200 0.800 46 H 0.180 0.820 47 H 0.092 0.908 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.888 -30.145 4.099 30.813 hybrid contribution 0.644 2.048 0.537 2.213 sum 5.532 -28.098 4.636 29.010 Atomic orbital electron populations 1.69813 1.06608 1.25968 1.59758 1.25550 0.96342 1.01092 1.04086 0.85254 0.77198 0.79419 0.78170 1.20250 1.22459 1.20569 1.19591 0.91408 0.85265 1.40628 0.90562 1.42606 1.05286 1.01080 1.88166 1.21632 0.93432 0.83899 0.94511 0.93047 1.23349 1.00183 0.96553 0.98253 1.22310 0.98737 0.93889 0.98778 1.22721 0.99626 0.93459 0.95424 0.88358 1.22975 0.99461 0.99710 0.79275 1.49356 1.63449 1.06993 1.15927 1.21067 0.75574 0.90786 0.80972 1.90716 1.49739 1.75192 1.31810 1.21640 1.05967 0.87828 1.00324 1.20227 1.03919 0.88039 0.97443 1.20732 0.93691 0.96965 0.98349 1.23166 0.98596 0.89624 0.95271 1.67821 1.27203 1.08649 1.14769 1.23226 0.87577 1.02248 0.96287 1.18909 0.86136 0.90351 1.02653 1.91524 1.53875 1.76735 1.89291 1.21834 1.00490 0.91949 0.98891 1.22368 1.00667 0.80937 0.96696 1.22888 0.99223 0.96164 0.94116 0.91995 0.94182 0.79752 0.92845 0.93713 0.89547 0.89658 0.88819 0.86801 0.86210 0.86297 0.90191 0.89802 0.80320 0.80005 0.81995 0.90769 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 3 Si 0.97 46.27 29.55 68.60 2.03 48.29 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.24 -13.01 9.96 84.03 0.84 -12.17 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.73 -36.31 5.29 -315.34 -1.67 -37.98 16 10 C 0.17 6.40 3.10 46.61 0.14 6.54 16 11 H 0.05 1.92 7.15 -2.39 -0.02 1.90 16 12 C -0.14 -4.37 6.68 32.45 0.22 -4.15 16 13 C -0.10 -1.89 6.38 31.61 0.20 -1.69 16 14 C -0.09 -1.83 3.95 -9.19 -0.04 -1.86 16 15 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 16 C 0.11 1.55 6.46 86.52 0.56 2.11 16 17 N -0.62 -14.16 3.31 -806.64 -2.67 -16.83 16 18 C 0.52 12.16 7.92 87.66 0.69 12.85 16 19 O -0.59 -19.73 16.27 -3.05 -0.05 -19.78 16 20 C -0.12 -1.41 4.67 29.85 0.14 -1.27 16 21 C -0.06 -0.74 4.66 29.85 0.14 -0.60 16 22 C -0.10 -1.07 5.15 -19.78 -0.10 -1.18 16 23 C 0.09 1.11 10.86 84.69 0.92 2.03 16 24 N -0.48 -7.24 10.36 -195.66 -2.03 -9.26 16 25 C 0.06 0.83 11.17 84.73 0.95 1.78 16 26 C 0.04 0.53 7.35 22.47 0.17 0.69 16 27 F -0.14 -1.95 17.28 44.97 0.78 -1.18 16 28 C -0.11 -1.18 9.85 22.51 0.22 -0.96 16 29 C 0.12 3.52 6.57 86.53 0.57 4.09 16 30 C -0.10 -3.14 3.59 -9.19 -0.03 -3.17 16 31 H 0.06 2.19 7.80 -2.39 -0.02 2.17 16 32 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 33 H 0.37 20.08 7.60 -92.71 -0.70 19.37 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.09 1.34 7.18 -2.39 -0.02 1.32 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.12 7.20 -2.39 -0.02 1.10 16 39 H 0.11 0.85 7.32 -2.39 -0.02 0.83 16 40 H 0.12 0.93 7.98 -2.39 -0.02 0.91 16 41 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.08 1.17 8.05 -2.39 -0.02 1.15 16 43 H 0.08 1.22 8.05 -2.39 -0.02 1.20 16 44 H 0.18 1.54 8.06 -2.92 -0.02 1.51 16 45 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 46 H 0.16 1.30 8.06 -2.92 -0.02 1.28 16 47 H 0.07 2.22 7.22 -2.39 -0.02 2.20 16 48 H 0.05 1.71 7.88 -2.38 -0.02 1.69 16 Total: -1.00 -74.67 394.73 3.00 -71.67 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.27 Total: 25.63 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 6.05 Total: -1.01 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -6.08 Total: -123.64 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.78 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.78 Total: -1.18 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -74.67 3.00 -71.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026436067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.251 kcal (2) G-P(sol) polarization free energy of solvation -74.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds